HEADER OXIDOREDUCTASE 12-MAR-16 5IR4 TITLE CRYSTAL STRUCTURE OF WILD-TYPE BACTERIAL LIPOXYGENASE FROM PSEUDOMONAS TITLE 2 AERUGINOSA PA-LOX WITH SPACE GROUP C2221 AT 1.48 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARACHIDONATE 15-LIPOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 15-LOXM LINOLEATE 13-LIPOXYGENASE; COMPND 5 EC: 1.13.11.12, 1.13.11.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LOXA, PA1169; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NON-HEME IRON ENZYME, PROTEIN-PHOSPHOLIPID COMPLEX, OXIDOREDUCTASE, KEYWDS 2 EICOSANOIDS, INFECTIOUS DISEASES EXPDTA X-RAY DIFFRACTION AUTHOR J.KALMS,S.BANTHIYA,E.GALEMOU YOGA,H.KUHN,P.SCHEERER REVDAT 5 10-JAN-24 5IR4 1 LINK REVDAT 4 06-SEP-17 5IR4 1 REMARK REVDAT 3 31-AUG-16 5IR4 1 JRNL REVDAT 2 17-AUG-16 5IR4 1 JRNL REVDAT 1 10-AUG-16 5IR4 0 JRNL AUTH S.BANTHIYA,J.KALMS,E.GALEMOU YOGA,I.IVANOV,X.CARPENA, JRNL AUTH 2 M.HAMBERG,H.KUHN,P.SCHEERER JRNL TITL STRUCTURAL AND FUNCTIONAL BASIS OF PHOSPHOLIPID OXYGENASE JRNL TITL 2 ACTIVITY OF BACTERIAL LIPOXYGENASE FROM PSEUDOMONAS JRNL TITL 3 AERUGINOSA. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1861 1681 2016 JRNL REFN ISSN 0006-3002 JRNL PMID 27500637 JRNL DOI 10.1016/J.BBALIP.2016.08.002 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 99223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5276 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7076 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 446 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5035 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 552 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -0.69000 REMARK 3 B33 (A**2) : 0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.410 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5593 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5372 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7640 ; 1.230 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12342 ; 0.854 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 726 ; 4.702 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;31.301 ;22.988 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 860 ;10.790 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;16.628 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 701 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8860 26.0075 -21.5849 REMARK 3 T TENSOR REMARK 3 T11: 0.0131 T22: 0.0181 REMARK 3 T33: 0.0046 T12: -0.0088 REMARK 3 T13: -0.0020 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.1964 L22: 0.1299 REMARK 3 L33: 0.0364 L12: 0.0327 REMARK 3 L13: -0.0686 L23: -0.0373 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.0138 S13: 0.0032 REMARK 3 S21: 0.0108 S22: -0.0057 S23: -0.0088 REMARK 3 S31: 0.0004 S32: -0.0006 S33: 0.0049 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 702 A 702 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2225 13.6247 -19.1775 REMARK 3 T TENSOR REMARK 3 T11: 0.0621 T22: 0.0227 REMARK 3 T33: 0.0210 T12: -0.0266 REMARK 3 T13: -0.0019 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.5208 L22: 1.0743 REMARK 3 L33: 1.3123 L12: 0.6217 REMARK 3 L13: -1.3457 L23: -0.2346 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: 0.0423 S13: -0.1271 REMARK 3 S21: 0.1765 S22: -0.0882 S23: -0.1140 REMARK 3 S31: 0.1164 S32: -0.0859 S33: 0.1114 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IR4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104548 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 48.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.77400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4G33 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12 % PEG 3350, 0.2 M MGCL2, 0.1 M TRIS REMARK 280 PH 7.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.91950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.91950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.87200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.69550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.87200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.69550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.91950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.87200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.69550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.91950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.87200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.69550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 711 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 SER A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 PRO A 13 REMARK 465 ARG A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 HIS A 17 REMARK 465 MET A 18 REMARK 465 ALA A 19 REMARK 465 ASN A 20 REMARK 465 THR A 201 REMARK 465 GLN A 202 REMARK 465 GLY A 203 REMARK 465 GLY A 204 REMARK 465 GLN A 205 REMARK 465 GLY A 206 REMARK 465 ASP A 207 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 47 CG OD1 OD2 REMARK 470 ASN A 48 CG OD1 ND2 REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 LEU A 199 CG CD1 CD2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 ARG A 637 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 375 -61.79 -97.80 REMARK 500 HIS A 377 -68.94 -90.65 REMARK 500 THR A 381 -85.27 -116.07 REMARK 500 SER A 552 -84.97 -107.36 REMARK 500 ILE A 572 137.69 -170.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 711 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 133 OE1 REMARK 620 2 GLU A 133 OE1 0.0 REMARK 620 3 HOH A 978 O 89.5 89.5 REMARK 620 4 HOH A 978 O 84.5 84.5 98.7 REMARK 620 5 HOH A1251 O 97.3 97.3 86.3 174.7 REMARK 620 6 HOH A1251 O 89.2 89.2 174.7 86.3 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 701 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 377 NE2 REMARK 620 2 HIS A 382 NE2 91.1 REMARK 620 3 HIS A 555 NE2 102.2 93.8 REMARK 620 4 ASN A 559 OD1 85.8 174.9 90.8 REMARK 620 5 ILE A 685 O 171.3 89.9 86.4 92.6 REMARK 620 6 HOH A 815 O 85.5 88.4 172.0 87.3 85.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZPE A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 712 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IR5 RELATED DB: PDB DBREF 5IR4 A -2 685 PDB 5IR4 5IR4 -2 685 SEQRES 1 A 688 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 688 LEU VAL PRO ARG GLY SER HIS MET ALA ASN ASP SER ILE SEQRES 3 A 688 PHE PHE SER PRO LEU LYS TYR LEU GLY ALA GLU GLN GLN SEQRES 4 A 688 ARG SER ILE ASP ALA SER ARG SER LEU LEU ASP ASN LEU SEQRES 5 A 688 ILE PRO PRO SER LEU PRO GLN TYR ASP ASN LEU ALA GLY SEQRES 6 A 688 LYS LEU ALA ARG ARG ALA VAL LEU THR SER LYS LYS LEU SEQRES 7 A 688 VAL TYR VAL TRP THR GLU ASN PHE ALA ASN VAL LYS GLY SEQRES 8 A 688 VAL PRO MET ALA ARG SER VAL PRO LEU GLY GLU LEU PRO SEQRES 9 A 688 ASN VAL ASP TRP LEU LEU LYS THR ALA GLY VAL ILE VAL SEQRES 10 A 688 GLU LEU ILE VAL ASN PHE VAL ALA SER LEU PRO ALA SER SEQRES 11 A 688 ALA ALA ALA GLN PHE GLU ARG ILE ALA ALA GLY LEU SER SEQRES 12 A 688 GLY ASP LEU GLU ALA ALA ARG GLN VAL HIS GLU ALA LEU SEQRES 13 A 688 LEU GLU GLU ALA LYS ASN ASP PRO ALA ALA ALA GLY SER SEQRES 14 A 688 LEU LEU LEU ARG PHE THR GLU LEU GLN THR ARG VAL ILE SEQRES 15 A 688 ALA LEU LEU THR ARG VAL GLY LEU LEU VAL ASP ASP ILE SEQRES 16 A 688 LEU LYS SER ALA SER ASN LEU VAL THR GLN GLY GLY GLN SEQRES 17 A 688 GLY ASP GLY LEU ASN ARG PHE ARG ALA VAL PHE GLY THR SEQRES 18 A 688 LEU ARG LEU PRO GLU VAL ALA ASP SER PHE ARG ASP ASP SEQRES 19 A 688 GLU ALA PHE ALA TYR TRP ARG VAL ALA GLY PRO ASN PRO SEQRES 20 A 688 LEU LEU ILE ARG ARG VAL ASP ALA LEU PRO ALA ASN PHE SEQRES 21 A 688 PRO LEU GLY GLU GLU GLN PHE ARG ARG VAL MET GLY ALA SEQRES 22 A 688 ASP ASP SER LEU LEU GLU ALA ALA ALA SER ARG ARG LEU SEQRES 23 A 688 TYR LEU LEU ASP TYR ALA GLU LEU GLY LYS LEU ALA PRO SEQRES 24 A 688 SER GLY ALA VAL ASP LYS LEU LEU THR GLY THR GLY PHE SEQRES 25 A 688 ALA TYR ALA PRO ILE ALA LEU PHE ALA LEU GLY LYS ASP SEQRES 26 A 688 ARG ALA GLY LEU LEU PRO VAL ALA ILE GLN CYS GLY GLN SEQRES 27 A 688 ASP PRO ALA THR HIS PRO MET PHE VAL ARG PRO ALA GLU SEQRES 28 A 688 SER GLU SER ASP LEU TYR TRP GLY TRP GLN MET ALA LYS SEQRES 29 A 688 THR VAL VAL GLN VAL ALA GLU GLU ASN TYR HIS GLU MET SEQRES 30 A 688 PHE VAL HIS LEU ALA GLN THR HIS LEU VAL SER GLU ALA SEQRES 31 A 688 PHE CYS LEU ALA THR GLN ARG THR LEU ALA PRO SER HIS SEQRES 32 A 688 PRO LEU HIS VAL LEU LEU ALA PRO HIS PHE GLU GLY THR SEQRES 33 A 688 LEU PHE ILE ASN GLU GLY ALA ALA ARG ILE LEU LEU PRO SEQRES 34 A 688 SER ALA GLY PHE ILE ASP VAL MET PHE ALA ALA PRO ILE SEQRES 35 A 688 GLN ASP THR GLN ALA THR ALA GLY GLY ASN ARG LEU GLY SEQRES 36 A 688 PHE ASP PHE TYR ARG GLY MET LEU PRO GLU SER LEU LYS SEQRES 37 A 688 ALA ARG ASN VAL ASP ASP PRO ALA ALA LEU PRO ASP TYR SEQRES 38 A 688 PRO TYR ARG ASP ASP GLY LEU LEU VAL TRP ASN ALA ILE SEQRES 39 A 688 ARG GLN TRP ALA ALA ASP TYR VAL ALA VAL TYR TYR ALA SEQRES 40 A 688 SER ASP GLY ASP VAL THR ALA ASP VAL GLU LEU ALA ALA SEQRES 41 A 688 TRP VAL GLY GLU VAL ILE GLY SER GLY LYS VAL ALA GLY SEQRES 42 A 688 PHE ARG PRO ILE THR GLY ARG SER GLN LEU VAL GLU VAL SEQRES 43 A 688 LEU THR MET VAL ILE PHE THR ALA SER ALA GLN HIS ALA SEQRES 44 A 688 ALA VAL ASN PHE PRO GLN PRO SER MET MET THR TYR ALA SEQRES 45 A 688 PRO ALA ILE CYS ALA MET SER ALA ALA PRO ALA PRO ASP SEQRES 46 A 688 SER PRO SER GLY LYS SER GLU ALA ASP TRP LEU LYS MET SEQRES 47 A 688 MET PRO PRO THR LEU VAL ALA LEU GLU LYS VAL ASN ILE SEQRES 48 A 688 TYR HIS LEU LEU GLY SER VAL TYR HIS GLY ARG LEU GLY SEQRES 49 A 688 ASP TYR ARG GLN THR GLY PHE PRO TYR ALA PRO VAL PHE SEQRES 50 A 688 SER ASP ARG ARG VAL THR ALA SER GLY GLY PRO LEU GLU SEQRES 51 A 688 ARG PHE GLN ALA ARG LEU LYS GLU VAL GLU ALA THR ILE SEQRES 52 A 688 ARG THR ARG ASN GLN ALA ARG ARG LYS PRO TYR GLU TYR SEQRES 53 A 688 LEU LEU PRO SER ARG ILE PRO ALA SER THR ASN ILE HET FE2 A 701 1 HET ZPE A 702 47 HET GOL A 703 12 HET GOL A 704 6 HET GOL A 705 6 HET GOL A 706 6 HET GOL A 707 12 HET GOL A 708 6 HET GOL A 709 6 HET CL A 710 1 HET MG A 711 1 HET PEG A 712 7 HETNAM FE2 FE (II) ION HETNAM ZPE (2R)-3-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-2- HETNAM 2 ZPE (TETRADEC-5-ENOYLOXY)PROPYL (11Z)-OCTADEC-11-ENOATE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FE2 FE 2+ FORMUL 3 ZPE C37 H70 N O8 P FORMUL 4 GOL 7(C3 H8 O3) FORMUL 11 CL CL 1- FORMUL 12 MG MG 2+ FORMUL 13 PEG C4 H10 O3 FORMUL 14 HOH *552(H2 O) HELIX 1 AA1 SER A 22 LYS A 29 5 8 HELIX 2 AA2 GLY A 32 ASN A 48 1 17 HELIX 3 AA3 LEU A 54 ASP A 58 5 5 HELIX 4 AA4 ASN A 59 TYR A 77 1 19 HELIX 5 AA5 PRO A 96 LEU A 100 5 5 HELIX 6 AA6 ASN A 102 LEU A 124 1 23 HELIX 7 AA7 PRO A 125 ASP A 160 1 36 HELIX 8 AA8 ALA A 163 VAL A 200 1 38 HELIX 9 AA9 LEU A 209 VAL A 215 1 7 HELIX 10 AB1 GLU A 223 PHE A 228 1 6 HELIX 11 AB2 ASP A 230 GLY A 241 1 12 HELIX 12 AB3 GLY A 260 GLY A 269 1 10 HELIX 13 AB4 SER A 273 SER A 280 1 8 HELIX 14 AB5 ALA A 289 ALA A 295 5 7 HELIX 15 AB6 GLU A 350 PHE A 375 1 26 HELIX 16 AB7 THR A 381 LEU A 396 1 16 HELIX 17 AB8 HIS A 400 ALA A 407 1 8 HELIX 18 AB9 PRO A 408 GLU A 411 5 4 HELIX 19 AC1 GLY A 412 LEU A 424 1 13 HELIX 20 AC2 GLY A 429 PHE A 435 1 7 HELIX 21 AC3 PRO A 438 PHE A 453 1 16 HELIX 22 AC4 MET A 459 ARG A 467 1 9 HELIX 23 AC5 TYR A 478 TYR A 503 1 26 HELIX 24 AC6 SER A 505 ALA A 511 1 7 HELIX 25 AC7 ASP A 512 GLY A 524 1 13 HELIX 26 AC8 GLY A 536 SER A 552 1 17 HELIX 27 AC9 SER A 552 PHE A 560 1 9 HELIX 28 AD1 PRO A 561 MET A 566 1 6 HELIX 29 AD2 SER A 588 LYS A 594 1 7 HELIX 30 AD3 PRO A 598 GLY A 613 1 16 HELIX 31 AD4 ASP A 636 ALA A 641 1 6 HELIX 32 AD5 GLY A 644 ARG A 667 1 24 HELIX 33 AD6 LEU A 675 ILE A 679 5 5 SHEET 1 AA1 2 TRP A 79 THR A 80 0 SHEET 2 AA1 2 MET A 91 ALA A 92 -1 O MET A 91 N THR A 80 SHEET 1 AA2 5 ARG A 248 ARG A 249 0 SHEET 2 AA2 5 LEU A 283 ASP A 287 -1 O LEU A 285 N ARG A 248 SHEET 3 AA2 5 ILE A 314 LEU A 319 -1 O PHE A 317 N TYR A 284 SHEET 4 AA2 5 LEU A 326 GLN A 332 -1 O VAL A 329 N LEU A 316 SHEET 5 AA2 5 MET A 342 VAL A 344 -1 O PHE A 343 N ILE A 331 SHEET 1 AA3 2 VAL A 300 LYS A 302 0 SHEET 2 AA3 2 GLY A 306 GLY A 308 -1 O GLY A 308 N VAL A 300 LINK OE1 GLU A 133 MG MG A 711 1555 1555 2.28 LINK OE1 GLU A 133 MG MG A 711 1555 4555 2.28 LINK NE2 HIS A 377 FE FE2 A 701 1555 1555 2.30 LINK NE2 HIS A 382 FE FE2 A 701 1555 1555 2.23 LINK NE2 HIS A 555 FE FE2 A 701 1555 1555 2.20 LINK OD1 ASN A 559 FE FE2 A 701 1555 1555 2.18 LINK O ILE A 685 FE FE2 A 701 1555 1555 2.19 LINK FE FE2 A 701 O HOH A 815 1555 1555 2.22 LINK MG MG A 711 O HOH A 978 1555 1555 2.05 LINK MG MG A 711 O HOH A 978 1555 4555 2.05 LINK MG MG A 711 O HOH A1251 1555 1555 2.10 LINK MG MG A 711 O HOH A1251 1555 4555 2.10 CISPEP 1 PHE A 628 PRO A 629 0 8.79 SITE 1 AC1 6 HIS A 377 HIS A 382 HIS A 555 ASN A 559 SITE 2 AC1 6 ILE A 685 HOH A 815 SITE 1 AC2 21 SER A 22 ILE A 23 TRP A 105 THR A 109 SITE 2 AC2 21 LEU A 182 VAL A 185 ASP A 190 LEU A 193 SITE 3 AC2 21 GLU A 373 HIS A 382 PHE A 415 ILE A 416 SITE 4 AC2 21 GLY A 419 ALA A 420 LEU A 424 ASN A 607 SITE 5 AC2 21 TYR A 609 ILE A 685 HOH A 871 HOH A 897 SITE 6 AC2 21 HOH A1148 SITE 1 AC3 7 PHE A 24 LEU A 28 ALA A 33 ARG A 37 SITE 2 AC3 7 LEU A 100 HOH A 825 HOH A 857 SITE 1 AC4 3 ARG A 67 GLU A 514 HOH A1243 SITE 1 AC5 10 THR A 339 HIS A 340 PRO A 341 PRO A 579 SITE 2 AC5 10 ALA A 580 ASP A 582 GLY A 643 GLU A 647 SITE 3 AC5 10 HOH A 943 HOH A1113 SITE 1 AC6 8 PHE A 228 ARG A 229 GLN A 358 LYS A 361 SITE 2 AC6 8 THR A 362 TRP A 592 HOH A 921 HOH A 990 SITE 1 AC7 13 GLN A 56 ASP A 58 ASN A 59 LYS A 63 SITE 2 AC7 13 LYS A 302 ASP A 432 PRO A 438 ILE A 439 SITE 3 AC7 13 GLN A 440 CL A 710 HOH A 811 HOH A 855 SITE 4 AC7 13 HOH A 900 SITE 1 AC8 7 GLU A 99 CYS A 389 GLN A 393 ALA A 407 SITE 2 AC8 7 PHE A 410 GLU A 411 HOH A 843 SITE 1 AC9 6 LYS A 87 GLY A 88 ALA A 444 GLY A 447 SITE 2 AC9 6 LEU A 451 HOH A1275 SITE 1 AD1 4 LYS A 63 LYS A 302 LEU A 303 GOL A 707 SITE 1 AD2 3 GLU A 133 HOH A 978 HOH A1251 SITE 1 AD3 6 GLN A 131 ILE A 135 ALA A 279 ARG A 281 SITE 2 AD3 6 ARG A 323 HOH A1066 CRYST1 83.744 97.391 153.839 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011941 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006500 0.00000