HEADER UNKNOWN FUNCTION 13-MAR-16 5IRD TITLE SOLUTION STRUCTURE OF RV1466 FROM MYCOBACTERIUM TUBERCULOSIS, A TITLE 2 PROTEIN ASSOCIATED WITH [FE-S] COMPLEX ASSEMBLY AND REPAIR - SEATTLE TITLE 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE TARGET TITLE 4 MYTUD.17486.A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RV1466; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25177 / SOURCE 3 H37RA); SOURCE 4 ORGANISM_TAXID: 419947; SOURCE 5 STRAIN: ATCC 25177 / H37RA; SOURCE 6 GENE: MRA_1475; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS INFECTIOUS DISEASE, TB, [FE-S] COMPLEXES, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 3 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.W.BUCHKO,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE AUTHOR 2 (SSGCID) REVDAT 5 15-MAY-24 5IRD 1 REMARK REVDAT 4 14-JUN-23 5IRD 1 REMARK REVDAT 3 11-DEC-19 5IRD 1 REMARK REVDAT 2 27-SEP-17 5IRD 1 COMPND REVDAT 1 25-MAY-16 5IRD 0 JRNL AUTH G.W.BUCHKO,S.N.HEWITT,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL SOLUTION STRUCTURE OF RV1466, A MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 PROTEIN ASSOCIATED WITH [FE-S] CLUSTER ASSEMBLY AND REPAIR. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CNS 1.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY USING CYANA (AUTOMATED NOESY ASSIGNMENTS). A TOTAL REMARK 3 OF 20 STRUCTURES OUT OF 100 WITH LOWEST TARGET FUNCTION FROM THE REMARK 3 FINAL CYANA CALCULATION WERE TAKEN AND REFINED BY RESTRAINED REMARK 3 MOLECULAR DYNAMICS/ENERGY MINIMIZATION IN EXPLICIT WATER (CNS) REMARK 3 AFTER ADDING 5.0% TO THE UPPER BOUNDARY LIMIT OF THE DISTANCE REMARK 3 RESTRAINTS AND THE VDW LIMIT TO THE LOWER RESTRAINT. PARAM19 WAS REMARK 3 USED FOR THE WATER REFINEMENT CALCULATIONS. REMARK 4 REMARK 4 5IRD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219075. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : .12 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-13C; U-15N] RV1466, REMARK 210 100 MM SODIUM CHLORIDE, 20 MM REMARK 210 TRIS, 1 MM DTT, 93% H2O/7% D2O; REMARK 210 0.5 MM [U-15N] RV1466, 100 MM REMARK 210 SODIUM CHLORIDE, 20 MM TRIS, 1 REMARK 210 MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D H(CCO)NH; 3D REMARK 210 C(CO)NH; 2D DELTA; DEUTERIUM REMARK 210 EXCHANGE; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ; 800 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; VXRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.115, FELIX 2007, PSVS REMARK 210 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 2 -159.34 -82.48 REMARK 500 1 THR A 8 -35.98 74.63 REMARK 500 1 ALA A 10 154.12 69.18 REMARK 500 1 ALA A 64 8.88 57.64 REMARK 500 1 PRO A 67 10.38 -64.66 REMARK 500 1 TRP A 95 8.86 -152.73 REMARK 500 1 ASN A 96 -60.05 -167.12 REMARK 500 1 TRP A 99 109.79 -53.88 REMARK 500 2 MET A 5 -168.86 -70.82 REMARK 500 2 SER A 6 -63.07 -133.68 REMARK 500 2 ALA A 10 149.36 69.71 REMARK 500 2 ASP A 45 110.77 -163.03 REMARK 500 2 TRP A 95 -31.54 -177.68 REMARK 500 2 ASN A 96 -49.20 -155.27 REMARK 500 2 PRO A 98 -163.97 -69.58 REMARK 500 2 GLN A 111 77.26 -112.11 REMARK 500 2 PHE A 117 40.25 -107.08 REMARK 500 3 PRO A 2 -70.08 -58.85 REMARK 500 3 SER A 6 -65.41 -144.07 REMARK 500 3 GLU A 7 103.08 -57.59 REMARK 500 3 ALA A 10 162.78 67.96 REMARK 500 3 PRO A 11 -178.98 -64.49 REMARK 500 3 ASN A 96 -52.82 174.93 REMARK 500 3 TRP A 99 109.24 -46.63 REMARK 500 4 SER A 4 84.00 -66.78 REMARK 500 4 MET A 5 34.43 -156.89 REMARK 500 4 ALA A 10 160.93 64.74 REMARK 500 4 ALA A 64 8.33 59.52 REMARK 500 4 PRO A 67 32.02 -77.63 REMARK 500 4 ASN A 96 -49.70 175.80 REMARK 500 4 ILE A 104 96.83 -69.52 REMARK 500 5 SER A 6 -157.30 -150.16 REMARK 500 5 GLU A 7 83.83 61.62 REMARK 500 5 ALA A 10 164.84 67.85 REMARK 500 5 TRP A 95 11.89 -147.96 REMARK 500 5 ASN A 96 -60.92 -174.94 REMARK 500 6 SER A 6 -51.87 -144.50 REMARK 500 6 ALA A 10 154.82 67.63 REMARK 500 6 ARG A 90 119.84 -164.61 REMARK 500 6 ASN A 96 -57.32 -177.01 REMARK 500 7 SER A 6 -42.83 -171.98 REMARK 500 7 ALA A 64 8.11 59.30 REMARK 500 7 PRO A 67 33.44 -76.13 REMARK 500 7 ASN A 96 -47.72 178.27 REMARK 500 7 PRO A 98 41.97 -82.25 REMARK 500 7 TRP A 99 -154.54 63.42 REMARK 500 8 THR A 8 91.69 -57.68 REMARK 500 8 ALA A 10 162.23 72.33 REMARK 500 8 VAL A 26 55.46 -90.21 REMARK 500 8 PRO A 67 35.08 -77.18 REMARK 500 REMARK 500 THIS ENTRY HAS 128 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30034 RELATED DB: BMRB REMARK 900 RELATED ID: SSGCID-MYTUD.17486.A RELATED DB: TARGETTRACK DBREF 5IRD A 5 119 UNP A5U2G9 A5U2G9_MYCTA 1 115 SEQADV 5IRD GLY A 1 UNP A5U2G9 EXPRESSION TAG SEQADV 5IRD PRO A 2 UNP A5U2G9 EXPRESSION TAG SEQADV 5IRD GLY A 3 UNP A5U2G9 EXPRESSION TAG SEQADV 5IRD SER A 4 UNP A5U2G9 EXPRESSION TAG SEQRES 1 A 119 GLY PRO GLY SER MET SER GLU THR SER ALA PRO ALA GLU SEQRES 2 A 119 GLU LEU LEU ALA ASP VAL GLU GLU ALA MET ARG ASP VAL SEQRES 3 A 119 VAL ASP PRO GLU LEU GLY ILE ASN VAL VAL ASP LEU GLY SEQRES 4 A 119 LEU VAL TYR GLY LEU ASP VAL GLN ASP GLY ASP GLU GLY SEQRES 5 A 119 THR VAL ALA LEU ILE ASP MET THR LEU THR SER ALA ALA SEQRES 6 A 119 CYS PRO LEU THR ASP VAL ILE GLU ASP GLN SER ARG SER SEQRES 7 A 119 ALA LEU VAL GLY SER GLY LEU VAL ASP ASP ILE ARG ILE SEQRES 8 A 119 ASN TRP VAL TRP ASN PRO PRO TRP GLY PRO ASP LYS ILE SEQRES 9 A 119 THR GLU ASP GLY ARG GLU GLN LEU ARG ALA LEU GLY PHE SEQRES 10 A 119 THR VAL HELIX 1 AA1 PRO A 11 VAL A 26 1 16 HELIX 2 AA2 ASN A 34 GLY A 39 5 6 HELIX 3 AA3 PRO A 67 GLY A 84 1 18 HELIX 4 AA4 GLY A 100 ILE A 104 5 5 HELIX 5 AA5 THR A 105 GLN A 111 1 7 SHEET 1 AA1 3 LEU A 44 ASP A 48 0 SHEET 2 AA1 3 THR A 53 MET A 59 -1 O VAL A 54 N GLN A 47 SHEET 3 AA1 3 ASP A 88 TRP A 93 1 O ASN A 92 N MET A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1