HEADER RNA BINDING PROTEIN 13-MAR-16 5IRF TITLE REVERSE TRANSCRIPTASE DOMAIN OF GROUP II INTRON MATURASE FROM TITLE 2 ROSEBURIA INTESTINALIS IN P1 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETRON-TYPE REVERSE TRANSCRIPTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 1-305; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROSEBURIA INTESTINALIS XB6B4; SOURCE 3 ORGANISM_TAXID: 718255; SOURCE 4 GENE: RO1_37670; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GROUP II INTRON, MATURASE, REVERSE TRANSCRIPTASE, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHAO,A.M.PYLE REVDAT 6 27-SEP-23 5IRF 1 LINK REVDAT 5 25-DEC-19 5IRF 1 REMARK REVDAT 4 27-SEP-17 5IRF 1 REMARK REVDAT 3 22-JUN-16 5IRF 1 JRNL REVDAT 2 25-MAY-16 5IRF 1 JRNL REVDAT 1 04-MAY-16 5IRF 0 JRNL AUTH C.ZHAO,A.M.PYLE JRNL TITL CRYSTAL STRUCTURES OF A GROUP II INTRON MATURASE REVEAL A JRNL TITL 2 MISSING LINK IN SPLICEOSOME EVOLUTION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 558 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 27136328 JRNL DOI 10.1038/NSMB.3224 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2254: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 152861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4896 - 4.9707 0.93 4649 245 0.1877 0.2080 REMARK 3 2 4.9707 - 3.9461 0.99 4977 262 0.1510 0.1719 REMARK 3 3 3.9461 - 3.4474 0.98 4949 261 0.1519 0.1627 REMARK 3 4 3.4474 - 3.1323 0.98 4917 258 0.1713 0.2032 REMARK 3 5 3.1323 - 2.9078 0.98 4964 262 0.1808 0.2177 REMARK 3 6 2.9078 - 2.7364 0.98 4910 258 0.1756 0.1972 REMARK 3 7 2.7364 - 2.5994 0.98 4949 261 0.1806 0.2045 REMARK 3 8 2.5994 - 2.4862 0.98 4914 258 0.1821 0.2222 REMARK 3 9 2.4862 - 2.3905 0.98 4900 258 0.1820 0.2271 REMARK 3 10 2.3905 - 2.3081 0.98 4935 260 0.1902 0.2420 REMARK 3 11 2.3081 - 2.2359 0.97 4904 258 0.1835 0.2658 REMARK 3 12 2.2359 - 2.1720 0.97 4882 257 0.1840 0.2295 REMARK 3 13 2.1720 - 2.1148 0.97 4906 258 0.1869 0.2233 REMARK 3 14 2.1148 - 2.0632 0.97 4886 258 0.1956 0.2620 REMARK 3 15 2.0632 - 2.0163 0.97 4831 254 0.1906 0.2409 REMARK 3 16 2.0163 - 1.9734 0.97 4890 257 0.2027 0.2702 REMARK 3 17 1.9734 - 1.9339 0.97 4821 254 0.2187 0.2678 REMARK 3 18 1.9339 - 1.8974 0.96 4882 257 0.2262 0.2691 REMARK 3 19 1.8974 - 1.8635 0.96 4821 254 0.2194 0.2587 REMARK 3 20 1.8635 - 1.8319 0.96 4871 255 0.2168 0.3055 REMARK 3 21 1.8319 - 1.8024 0.96 4800 253 0.2189 0.2693 REMARK 3 22 1.8024 - 1.7747 0.96 4887 256 0.2253 0.2666 REMARK 3 23 1.7747 - 1.7486 0.96 4736 250 0.2474 0.3090 REMARK 3 24 1.7486 - 1.7239 0.96 4823 254 0.2757 0.3357 REMARK 3 25 1.7239 - 1.7006 0.95 4876 257 0.2909 0.3637 REMARK 3 26 1.7006 - 1.6785 0.95 4707 247 0.3004 0.3402 REMARK 3 27 1.6785 - 1.6576 0.95 4847 255 0.3146 0.3657 REMARK 3 28 1.6576 - 1.6376 0.95 4790 251 0.3377 0.3673 REMARK 3 29 1.6376 - 1.6185 0.95 4740 250 0.3356 0.3762 REMARK 3 30 1.6185 - 1.6004 0.84 4255 224 0.4192 0.4629 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 9644 REMARK 3 ANGLE : 0.784 13046 REMARK 3 CHIRALITY : 0.051 1438 REMARK 3 PLANARITY : 0.005 1711 REMARK 3 DIHEDRAL : 12.850 6095 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IRF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 152938 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HHJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PROPANE PH 8.5, 200 MM REMARK 280 NAOAC-3H2O, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 GLU A 8 REMARK 465 ARG A 9 REMARK 465 LYS A 10 REMARK 465 GLU A 11 REMARK 465 ARG A 12 REMARK 465 MET A 13 REMARK 465 ASP A 14 REMARK 465 ILE A 82 REMARK 465 PRO A 83 REMARK 465 LYS A 84 REMARK 465 PRO A 85 REMARK 465 ASP A 86 REMARK 465 GLY A 87 REMARK 465 GLY A 88 REMARK 465 VAL A 89 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 GLY B 6 REMARK 465 THR B 7 REMARK 465 GLU B 8 REMARK 465 ARG B 9 REMARK 465 LYS B 10 REMARK 465 GLU B 11 REMARK 465 ARG B 12 REMARK 465 MET B 13 REMARK 465 ASP B 14 REMARK 465 PRO B 85 REMARK 465 ASP B 86 REMARK 465 GLY B 87 REMARK 465 GLY B 88 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 LYS C 3 REMARK 465 SER C 4 REMARK 465 SER C 5 REMARK 465 GLY C 6 REMARK 465 THR C 7 REMARK 465 GLU C 8 REMARK 465 ARG C 9 REMARK 465 LYS C 10 REMARK 465 GLU C 11 REMARK 465 ARG C 12 REMARK 465 MET C 13 REMARK 465 ASP C 14 REMARK 465 THR C 15 REMARK 465 ILE C 82 REMARK 465 PRO C 83 REMARK 465 LYS C 84 REMARK 465 PRO C 85 REMARK 465 ASP C 86 REMARK 465 GLY C 87 REMARK 465 GLY C 88 REMARK 465 VAL C 89 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 LYS D 3 REMARK 465 SER D 4 REMARK 465 SER D 5 REMARK 465 GLY D 6 REMARK 465 THR D 7 REMARK 465 GLU D 8 REMARK 465 ARG D 9 REMARK 465 LYS D 10 REMARK 465 GLU D 11 REMARK 465 ARG D 12 REMARK 465 MET D 13 REMARK 465 ASP D 14 REMARK 465 THR D 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 502 O HOH D 623 2.10 REMARK 500 O HOH B 669 O HOH C 785 2.12 REMARK 500 O HOH C 785 O HOH D 731 2.14 REMARK 500 OD1 ASP D 140 O HOH D 501 2.14 REMARK 500 OD1 ASN A 209 O HOH A 501 2.16 REMARK 500 OE1 GLU D 196 O HOH D 502 2.17 REMARK 500 O HOH D 644 O HOH D 767 2.18 REMARK 500 O HOH C 544 O HOH C 668 2.18 REMARK 500 NH2 ARG B 37 OD2 ASP D 144 2.18 REMARK 500 O HOH A 557 O HOH C 681 2.19 REMARK 500 OD2 ASP A 144 NH1 ARG C 37 2.19 REMARK 500 O HOH D 617 O HOH D 713 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 17 49.78 -141.88 REMARK 500 LYS A 39 -129.35 54.66 REMARK 500 ALA A 237 -129.06 55.56 REMARK 500 LYS B 39 -129.92 52.81 REMARK 500 ALA B 237 -122.36 46.77 REMARK 500 LYS C 39 -134.39 56.77 REMARK 500 ALA C 237 -129.79 57.79 REMARK 500 LYS D 39 -130.97 55.87 REMARK 500 ALA D 237 -130.99 56.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 796 DISTANCE = 6.69 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 401 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 151 OD1 REMARK 620 2 ILE A 152 O 98.9 REMARK 620 3 ASP A 239 OD1 126.2 125.6 REMARK 620 4 CYS A 240 O 100.1 92.7 105.6 REMARK 620 5 HOH A 571 O 147.2 50.9 86.0 72.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 401 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 151 OD1 REMARK 620 2 ILE B 152 O 105.8 REMARK 620 3 ASP B 239 OD1 119.4 127.4 REMARK 620 4 CYS B 240 O 97.5 94.0 104.6 REMARK 620 5 HOH B 536 O 152.7 51.7 87.9 72.1 REMARK 620 6 HOH B 687 O 79.6 92.7 71.9 173.2 113.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 401 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 151 OD1 REMARK 620 2 ILE C 152 O 94.3 REMARK 620 3 ASP C 239 OD1 125.1 123.3 REMARK 620 4 CYS C 240 O 106.8 94.6 108.1 REMARK 620 5 HOH C 563 O 106.0 71.2 60.4 145.1 REMARK 620 6 HOH C 602 O 51.8 131.6 73.5 125.1 85.2 REMARK 620 7 HOH C 658 O 145.9 53.6 86.5 69.4 76.8 157.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 401 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 151 OD1 REMARK 620 2 ILE D 152 O 99.6 REMARK 620 3 ASP D 239 OD1 114.6 134.5 REMARK 620 4 CYS D 240 O 103.3 100.4 99.8 REMARK 620 5 HOH D 555 O 72.9 78.4 83.8 175.7 REMARK 620 6 HOH D 606 O 154.6 56.5 90.3 75.6 106.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IRG RELATED DB: PDB DBREF 5IRF A 1 305 UNP D4L313 D4L313_9FIRM 1 305 DBREF 5IRF B 1 305 UNP D4L313 D4L313_9FIRM 1 305 DBREF 5IRF C 1 305 UNP D4L313 D4L313_9FIRM 1 305 DBREF 5IRF D 1 305 UNP D4L313 D4L313_9FIRM 1 305 SEQRES 1 A 305 MET VAL LYS SER SER GLY THR GLU ARG LYS GLU ARG MET SEQRES 2 A 305 ASP THR SER SER LEU MET GLU GLN ILE LEU SER ASN ASP SEQRES 3 A 305 ASN LEU ASN ARG ALA TYR LEU GLN VAL VAL ARG ASN LYS SEQRES 4 A 305 GLY ALA GLU GLY VAL ASP GLY MET LYS TYR THR GLU LEU SEQRES 5 A 305 LYS GLU TYR LEU ALA LYS ASN GLY GLU ILE ILE LYS GLU SEQRES 6 A 305 GLN LEU ARG ILE ARG LYS TYR LYS PRO GLN PRO VAL ARG SEQRES 7 A 305 ARG VAL GLU ILE PRO LYS PRO ASP GLY GLY VAL ARG ASN SEQRES 8 A 305 LEU GLY VAL PRO THR VAL THR ASP ARG PHE ILE GLN GLN SEQRES 9 A 305 ALA ILE ALA GLN VAL LEU THR PRO ILE TYR GLU GLU GLN SEQRES 10 A 305 PHE HIS ASP HIS SER TYR GLY PHE ARG PRO ASN ARG CYS SEQRES 11 A 305 ALA GLN GLN ALA ILE LEU THR ALA LEU ASP MET MET ASN SEQRES 12 A 305 ASP GLY ASN ASP TRP ILE VAL ASP ILE ASP LEU GLU LYS SEQRES 13 A 305 PHE PHE ASP THR VAL ASN HIS ASP LYS LEU MET THR ILE SEQRES 14 A 305 ILE GLY ARG THR ILE LYS ASP GLY ASP VAL ILE SER ILE SEQRES 15 A 305 VAL ARG LYS TYR LEU VAL SER GLY ILE MET ILE ASP ASP SEQRES 16 A 305 GLU TYR GLU ASP SER ILE VAL GLY THR PRO GLN GLY GLY SEQRES 17 A 305 ASN LEU SER PRO LEU LEU ALA ASN ILE MET LEU ASN GLU SEQRES 18 A 305 LEU ASP LYS GLU MET GLU LYS ARG GLY LEU ASN PHE VAL SEQRES 19 A 305 ARG TYR ALA ASP ASP CYS ILE ILE MET VAL GLY SER GLU SEQRES 20 A 305 MET SER ALA ASN ARG VAL MET ARG ASN ILE SER ARG PHE SEQRES 21 A 305 ILE GLU GLU LYS LEU GLY LEU LYS VAL ASN MET THR LYS SEQRES 22 A 305 SER LYS VAL ASP ARG PRO ARG GLY ILE LYS TYR LEU GLY SEQRES 23 A 305 PHE GLY PHE TYR TYR ASP THR SER ALA GLN GLN PHE LYS SEQRES 24 A 305 ALA LYS PRO HIS ALA LYS SEQRES 1 B 305 MET VAL LYS SER SER GLY THR GLU ARG LYS GLU ARG MET SEQRES 2 B 305 ASP THR SER SER LEU MET GLU GLN ILE LEU SER ASN ASP SEQRES 3 B 305 ASN LEU ASN ARG ALA TYR LEU GLN VAL VAL ARG ASN LYS SEQRES 4 B 305 GLY ALA GLU GLY VAL ASP GLY MET LYS TYR THR GLU LEU SEQRES 5 B 305 LYS GLU TYR LEU ALA LYS ASN GLY GLU ILE ILE LYS GLU SEQRES 6 B 305 GLN LEU ARG ILE ARG LYS TYR LYS PRO GLN PRO VAL ARG SEQRES 7 B 305 ARG VAL GLU ILE PRO LYS PRO ASP GLY GLY VAL ARG ASN SEQRES 8 B 305 LEU GLY VAL PRO THR VAL THR ASP ARG PHE ILE GLN GLN SEQRES 9 B 305 ALA ILE ALA GLN VAL LEU THR PRO ILE TYR GLU GLU GLN SEQRES 10 B 305 PHE HIS ASP HIS SER TYR GLY PHE ARG PRO ASN ARG CYS SEQRES 11 B 305 ALA GLN GLN ALA ILE LEU THR ALA LEU ASP MET MET ASN SEQRES 12 B 305 ASP GLY ASN ASP TRP ILE VAL ASP ILE ASP LEU GLU LYS SEQRES 13 B 305 PHE PHE ASP THR VAL ASN HIS ASP LYS LEU MET THR ILE SEQRES 14 B 305 ILE GLY ARG THR ILE LYS ASP GLY ASP VAL ILE SER ILE SEQRES 15 B 305 VAL ARG LYS TYR LEU VAL SER GLY ILE MET ILE ASP ASP SEQRES 16 B 305 GLU TYR GLU ASP SER ILE VAL GLY THR PRO GLN GLY GLY SEQRES 17 B 305 ASN LEU SER PRO LEU LEU ALA ASN ILE MET LEU ASN GLU SEQRES 18 B 305 LEU ASP LYS GLU MET GLU LYS ARG GLY LEU ASN PHE VAL SEQRES 19 B 305 ARG TYR ALA ASP ASP CYS ILE ILE MET VAL GLY SER GLU SEQRES 20 B 305 MET SER ALA ASN ARG VAL MET ARG ASN ILE SER ARG PHE SEQRES 21 B 305 ILE GLU GLU LYS LEU GLY LEU LYS VAL ASN MET THR LYS SEQRES 22 B 305 SER LYS VAL ASP ARG PRO ARG GLY ILE LYS TYR LEU GLY SEQRES 23 B 305 PHE GLY PHE TYR TYR ASP THR SER ALA GLN GLN PHE LYS SEQRES 24 B 305 ALA LYS PRO HIS ALA LYS SEQRES 1 C 305 MET VAL LYS SER SER GLY THR GLU ARG LYS GLU ARG MET SEQRES 2 C 305 ASP THR SER SER LEU MET GLU GLN ILE LEU SER ASN ASP SEQRES 3 C 305 ASN LEU ASN ARG ALA TYR LEU GLN VAL VAL ARG ASN LYS SEQRES 4 C 305 GLY ALA GLU GLY VAL ASP GLY MET LYS TYR THR GLU LEU SEQRES 5 C 305 LYS GLU TYR LEU ALA LYS ASN GLY GLU ILE ILE LYS GLU SEQRES 6 C 305 GLN LEU ARG ILE ARG LYS TYR LYS PRO GLN PRO VAL ARG SEQRES 7 C 305 ARG VAL GLU ILE PRO LYS PRO ASP GLY GLY VAL ARG ASN SEQRES 8 C 305 LEU GLY VAL PRO THR VAL THR ASP ARG PHE ILE GLN GLN SEQRES 9 C 305 ALA ILE ALA GLN VAL LEU THR PRO ILE TYR GLU GLU GLN SEQRES 10 C 305 PHE HIS ASP HIS SER TYR GLY PHE ARG PRO ASN ARG CYS SEQRES 11 C 305 ALA GLN GLN ALA ILE LEU THR ALA LEU ASP MET MET ASN SEQRES 12 C 305 ASP GLY ASN ASP TRP ILE VAL ASP ILE ASP LEU GLU LYS SEQRES 13 C 305 PHE PHE ASP THR VAL ASN HIS ASP LYS LEU MET THR ILE SEQRES 14 C 305 ILE GLY ARG THR ILE LYS ASP GLY ASP VAL ILE SER ILE SEQRES 15 C 305 VAL ARG LYS TYR LEU VAL SER GLY ILE MET ILE ASP ASP SEQRES 16 C 305 GLU TYR GLU ASP SER ILE VAL GLY THR PRO GLN GLY GLY SEQRES 17 C 305 ASN LEU SER PRO LEU LEU ALA ASN ILE MET LEU ASN GLU SEQRES 18 C 305 LEU ASP LYS GLU MET GLU LYS ARG GLY LEU ASN PHE VAL SEQRES 19 C 305 ARG TYR ALA ASP ASP CYS ILE ILE MET VAL GLY SER GLU SEQRES 20 C 305 MET SER ALA ASN ARG VAL MET ARG ASN ILE SER ARG PHE SEQRES 21 C 305 ILE GLU GLU LYS LEU GLY LEU LYS VAL ASN MET THR LYS SEQRES 22 C 305 SER LYS VAL ASP ARG PRO ARG GLY ILE LYS TYR LEU GLY SEQRES 23 C 305 PHE GLY PHE TYR TYR ASP THR SER ALA GLN GLN PHE LYS SEQRES 24 C 305 ALA LYS PRO HIS ALA LYS SEQRES 1 D 305 MET VAL LYS SER SER GLY THR GLU ARG LYS GLU ARG MET SEQRES 2 D 305 ASP THR SER SER LEU MET GLU GLN ILE LEU SER ASN ASP SEQRES 3 D 305 ASN LEU ASN ARG ALA TYR LEU GLN VAL VAL ARG ASN LYS SEQRES 4 D 305 GLY ALA GLU GLY VAL ASP GLY MET LYS TYR THR GLU LEU SEQRES 5 D 305 LYS GLU TYR LEU ALA LYS ASN GLY GLU ILE ILE LYS GLU SEQRES 6 D 305 GLN LEU ARG ILE ARG LYS TYR LYS PRO GLN PRO VAL ARG SEQRES 7 D 305 ARG VAL GLU ILE PRO LYS PRO ASP GLY GLY VAL ARG ASN SEQRES 8 D 305 LEU GLY VAL PRO THR VAL THR ASP ARG PHE ILE GLN GLN SEQRES 9 D 305 ALA ILE ALA GLN VAL LEU THR PRO ILE TYR GLU GLU GLN SEQRES 10 D 305 PHE HIS ASP HIS SER TYR GLY PHE ARG PRO ASN ARG CYS SEQRES 11 D 305 ALA GLN GLN ALA ILE LEU THR ALA LEU ASP MET MET ASN SEQRES 12 D 305 ASP GLY ASN ASP TRP ILE VAL ASP ILE ASP LEU GLU LYS SEQRES 13 D 305 PHE PHE ASP THR VAL ASN HIS ASP LYS LEU MET THR ILE SEQRES 14 D 305 ILE GLY ARG THR ILE LYS ASP GLY ASP VAL ILE SER ILE SEQRES 15 D 305 VAL ARG LYS TYR LEU VAL SER GLY ILE MET ILE ASP ASP SEQRES 16 D 305 GLU TYR GLU ASP SER ILE VAL GLY THR PRO GLN GLY GLY SEQRES 17 D 305 ASN LEU SER PRO LEU LEU ALA ASN ILE MET LEU ASN GLU SEQRES 18 D 305 LEU ASP LYS GLU MET GLU LYS ARG GLY LEU ASN PHE VAL SEQRES 19 D 305 ARG TYR ALA ASP ASP CYS ILE ILE MET VAL GLY SER GLU SEQRES 20 D 305 MET SER ALA ASN ARG VAL MET ARG ASN ILE SER ARG PHE SEQRES 21 D 305 ILE GLU GLU LYS LEU GLY LEU LYS VAL ASN MET THR LYS SEQRES 22 D 305 SER LYS VAL ASP ARG PRO ARG GLY ILE LYS TYR LEU GLY SEQRES 23 D 305 PHE GLY PHE TYR TYR ASP THR SER ALA GLN GLN PHE LYS SEQRES 24 D 305 ALA LYS PRO HIS ALA LYS HET K A 401 1 HET K B 401 1 HET K C 401 1 HET K D 401 1 HETNAM K POTASSIUM ION FORMUL 5 K 4(K 1+) FORMUL 9 HOH *1027(H2 O) HELIX 1 AA1 LEU A 18 LEU A 23 1 6 HELIX 2 AA2 SER A 24 ASN A 38 1 15 HELIX 3 AA3 LYS A 48 THR A 50 5 3 HELIX 4 AA4 GLU A 51 ILE A 69 1 19 HELIX 5 AA5 THR A 96 GLU A 116 1 21 HELIX 6 AA6 CYS A 130 ASP A 144 1 15 HELIX 7 AA7 LYS A 156 VAL A 161 1 6 HELIX 8 AA8 ASN A 162 ARG A 172 1 11 HELIX 9 AA9 ASP A 176 GLY A 190 1 15 HELIX 10 AB1 ASP A 195 SER A 200 5 6 HELIX 11 AB2 LEU A 210 ARG A 229 1 20 HELIX 12 AB3 SER A 246 LYS A 264 1 19 HELIX 13 AB4 ARG A 278 GLY A 281 5 4 HELIX 14 AB5 SER B 17 LEU B 23 1 7 HELIX 15 AB6 SER B 24 LYS B 39 1 16 HELIX 16 AB7 LYS B 48 THR B 50 5 3 HELIX 17 AB8 GLU B 51 ILE B 69 1 19 HELIX 18 AB9 THR B 96 GLU B 116 1 21 HELIX 19 AC1 CYS B 130 ASP B 144 1 15 HELIX 20 AC2 LYS B 156 VAL B 161 1 6 HELIX 21 AC3 ASN B 162 ARG B 172 1 11 HELIX 22 AC4 ASP B 176 GLY B 190 1 15 HELIX 23 AC5 ASP B 195 SER B 200 5 6 HELIX 24 AC6 LEU B 210 ARG B 229 1 20 HELIX 25 AC7 SER B 246 LEU B 265 1 20 HELIX 26 AC8 ARG B 278 GLY B 281 5 4 HELIX 27 AC9 SER C 17 LEU C 23 1 7 HELIX 28 AD1 SER C 24 LYS C 39 1 16 HELIX 29 AD2 LYS C 48 THR C 50 5 3 HELIX 30 AD3 GLU C 51 ILE C 69 1 19 HELIX 31 AD4 THR C 96 GLU C 116 1 21 HELIX 32 AD5 CYS C 130 ASP C 144 1 15 HELIX 33 AD6 LYS C 156 VAL C 161 1 6 HELIX 34 AD7 ASN C 162 ARG C 172 1 11 HELIX 35 AD8 ASP C 176 GLY C 190 1 15 HELIX 36 AD9 ASP C 195 SER C 200 5 6 HELIX 37 AE1 LEU C 210 ARG C 229 1 20 HELIX 38 AE2 SER C 246 LEU C 265 1 20 HELIX 39 AE3 ASN C 270 SER C 274 5 5 HELIX 40 AE4 ARG C 278 GLY C 281 5 4 HELIX 41 AE5 SER D 17 LEU D 23 1 7 HELIX 42 AE6 SER D 24 LYS D 39 1 16 HELIX 43 AE7 LYS D 48 THR D 50 5 3 HELIX 44 AE8 GLU D 51 ILE D 69 1 19 HELIX 45 AE9 THR D 96 GLU D 116 1 21 HELIX 46 AF1 CYS D 130 ASP D 144 1 15 HELIX 47 AF2 LYS D 156 VAL D 161 1 6 HELIX 48 AF3 ASN D 162 ARG D 172 1 11 HELIX 49 AF4 ASP D 176 GLY D 190 1 15 HELIX 50 AF5 ASP D 195 SER D 200 5 6 HELIX 51 AF6 LEU D 210 ARG D 229 1 20 HELIX 52 AF7 SER D 246 LYS D 264 1 19 HELIX 53 AF8 ASN D 270 SER D 274 5 5 HELIX 54 AF9 ARG D 278 GLY D 281 5 4 SHEET 1 AA1 2 ARG A 78 VAL A 80 0 SHEET 2 AA1 2 LEU A 92 VAL A 94 -1 O LEU A 92 N VAL A 80 SHEET 1 AA2 4 ASN A 232 TYR A 236 0 SHEET 2 AA2 4 ASP A 239 VAL A 244 -1 O MET A 243 N ASN A 232 SHEET 3 AA2 4 TRP A 148 ILE A 152 -1 N TRP A 148 O VAL A 244 SHEET 4 AA2 4 LYS A 275 ASP A 277 -1 O ASP A 277 N ILE A 149 SHEET 1 AA3 3 LYS A 283 TYR A 284 0 SHEET 2 AA3 3 PHE A 287 ASP A 292 -1 O PHE A 287 N TYR A 284 SHEET 3 AA3 3 GLN A 297 PRO A 302 -1 O LYS A 301 N GLY A 288 SHEET 1 AA4 2 ARG B 78 ILE B 82 0 SHEET 2 AA4 2 ARG B 90 VAL B 94 -1 O LEU B 92 N VAL B 80 SHEET 1 AA5 4 ASN B 232 TYR B 236 0 SHEET 2 AA5 4 ASP B 239 VAL B 244 -1 O MET B 243 N ASN B 232 SHEET 3 AA5 4 TRP B 148 ILE B 152 -1 N TRP B 148 O VAL B 244 SHEET 4 AA5 4 LYS B 275 ASP B 277 -1 O ASP B 277 N ILE B 149 SHEET 1 AA6 3 LYS B 283 TYR B 284 0 SHEET 2 AA6 3 PHE B 287 ASP B 292 -1 O PHE B 287 N TYR B 284 SHEET 3 AA6 3 GLN B 297 PRO B 302 -1 O LYS B 301 N GLY B 288 SHEET 1 AA7 2 ARG C 78 VAL C 80 0 SHEET 2 AA7 2 LEU C 92 VAL C 94 -1 O LEU C 92 N VAL C 80 SHEET 1 AA8 4 ASN C 232 TYR C 236 0 SHEET 2 AA8 4 ASP C 239 VAL C 244 -1 O MET C 243 N ASN C 232 SHEET 3 AA8 4 TRP C 148 ASP C 151 -1 N TRP C 148 O VAL C 244 SHEET 4 AA8 4 LYS C 275 ASP C 277 -1 O ASP C 277 N ILE C 149 SHEET 1 AA9 3 LYS C 283 TYR C 284 0 SHEET 2 AA9 3 PHE C 287 ASP C 292 -1 O PHE C 287 N TYR C 284 SHEET 3 AA9 3 GLN C 297 PRO C 302 -1 O LYS C 301 N GLY C 288 SHEET 1 AB1 2 ARG D 78 PRO D 83 0 SHEET 2 AB1 2 VAL D 89 VAL D 94 -1 O ARG D 90 N ILE D 82 SHEET 1 AB2 4 ASN D 232 TYR D 236 0 SHEET 2 AB2 4 ASP D 239 VAL D 244 -1 O MET D 243 N ASN D 232 SHEET 3 AB2 4 TRP D 148 ASP D 151 -1 N VAL D 150 O ILE D 242 SHEET 4 AB2 4 LYS D 275 ASP D 277 -1 O ASP D 277 N ILE D 149 SHEET 1 AB3 3 LYS D 283 TYR D 284 0 SHEET 2 AB3 3 PHE D 287 ASP D 292 -1 O PHE D 287 N TYR D 284 SHEET 3 AB3 3 GLN D 297 PRO D 302 -1 O LYS D 301 N GLY D 288 LINK OD1 ASP A 151 K K A 401 1555 1555 2.56 LINK O ILE A 152 K K A 401 1555 1555 2.73 LINK OD1 ASP A 239 K K A 401 1555 1555 2.70 LINK O CYS A 240 K K A 401 1555 1555 2.65 LINK K K A 401 O HOH A 571 1555 1555 3.47 LINK OD1 ASP B 151 K K B 401 1555 1555 2.54 LINK O ILE B 152 K K B 401 1555 1555 2.78 LINK OD1 ASP B 239 K K B 401 1555 1555 2.76 LINK O CYS B 240 K K B 401 1555 1555 2.75 LINK K K B 401 O HOH B 536 1555 1555 3.21 LINK K K B 401 O HOH B 687 1555 1555 2.77 LINK OD1 ASP C 151 K K C 401 1555 1555 2.61 LINK O ILE C 152 K K C 401 1555 1555 2.78 LINK OD1 ASP C 239 K K C 401 1555 1555 2.74 LINK O CYS C 240 K K C 401 1555 1555 2.75 LINK K K C 401 O HOH C 563 1555 1555 2.56 LINK K K C 401 O HOH C 602 1555 1555 3.45 LINK K K C 401 O HOH C 658 1555 1555 3.46 LINK OD1 ASP D 151 K K D 401 1555 1555 2.54 LINK O ILE D 152 K K D 401 1555 1555 2.72 LINK OD1 ASP D 239 K K D 401 1555 1555 2.93 LINK O CYS D 240 K K D 401 1555 1555 2.68 LINK K K D 401 O HOH D 555 1555 1555 3.13 LINK K K D 401 O HOH D 606 1555 1555 3.07 SITE 1 AC1 4 ASP A 151 ILE A 152 ASP A 239 CYS A 240 SITE 1 AC2 5 ASP B 151 ILE B 152 ASP B 239 CYS B 240 SITE 2 AC2 5 HOH B 687 SITE 1 AC3 5 ASP C 151 ILE C 152 ASP C 239 CYS C 240 SITE 2 AC3 5 HOH C 563 SITE 1 AC4 5 ASP D 151 ILE D 152 ASP D 239 CYS D 240 SITE 2 AC4 5 HOH D 606 CRYST1 50.290 79.160 86.020 109.00 90.56 105.04 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019885 0.005343 0.002136 0.00000 SCALE2 0.000000 0.013081 0.004726 0.00000 SCALE3 0.000000 0.000000 0.012361 0.00000