HEADER HYDROLASE 15-MAR-16 5IS2 TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM AVIUM SERB2 AT PH 6.6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOSERINE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 5-400; COMPND 5 SYNONYM: PSPASE,O-PHOSPHOSERINE PHOSPHOHYDROLASE; COMPND 6 EC: 3.1.3.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM (STRAIN 104); SOURCE 3 ORGANISM_TAXID: 243243; SOURCE 4 STRAIN: 104; SOURCE 5 GENE: SERB, MAV_3907; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS HAD FAMILY, PHOSPHOSERINE PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SHREE,R.RAMACHANDRAN REVDAT 2 08-NOV-23 5IS2 1 REMARK LINK REVDAT 1 27-APR-16 5IS2 0 JRNL AUTH S.SHREE,R.RAMACHANDRAN JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM AVIUM SERB2 (MAV_3907) AT JRNL TITL 2 PH 6.6 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.ABENDROTH,A.S.GARDBERG,J.I.ROBINSON,J.S.CHRISTENSEN, REMARK 1 AUTH 2 B.L.STAKER,P.J.MYLER,L.J.STEWART,T.E.EDWARDS REMARK 1 TITL SAD PHASING USING IODIDE IONS IN A HIGH-THROUGHPUT REMARK 1 TITL 2 STRUCTURAL GENOMICS ENVIRONMENT. REMARK 1 REF J. STRUCT. FUNCT. GENOMICS V. 12 83 2011 REMARK 1 REFN ISSN 1570-0267 REMARK 1 PMID 21359836 REMARK 1 DOI 10.1007/S10969-011-9101-7 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 38932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.1420 - 4.5255 0.99 2843 154 0.1780 0.1994 REMARK 3 2 4.5255 - 3.5950 1.00 2759 149 0.1683 0.1781 REMARK 3 3 3.5950 - 3.1414 1.00 2720 147 0.1939 0.2293 REMARK 3 4 3.1414 - 2.8546 1.00 2721 147 0.2267 0.2361 REMARK 3 5 2.8546 - 2.6502 1.00 2689 146 0.2333 0.2856 REMARK 3 6 2.6502 - 2.4941 1.00 2694 144 0.2131 0.2773 REMARK 3 7 2.4941 - 2.3692 1.00 2657 144 0.2097 0.2756 REMARK 3 8 2.3692 - 2.2662 1.00 2699 147 0.2172 0.2845 REMARK 3 9 2.2662 - 2.1790 0.99 2656 144 0.2270 0.2566 REMARK 3 10 2.1790 - 2.1038 0.98 2586 140 0.2359 0.2510 REMARK 3 11 2.1038 - 2.0381 0.97 2616 141 0.2581 0.2860 REMARK 3 12 2.0381 - 1.9798 0.96 2564 138 0.2676 0.2880 REMARK 3 13 1.9798 - 1.9277 0.95 2521 138 0.3008 0.3324 REMARK 3 14 1.9277 - 1.8807 0.83 2208 120 0.3644 0.4077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2868 REMARK 3 ANGLE : 0.959 3915 REMARK 3 CHIRALITY : 0.037 500 REMARK 3 PLANARITY : 0.004 510 REMARK 3 DIHEDRAL : 12.030 1011 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -4.9413 -10.7168 -38.6808 REMARK 3 T TENSOR REMARK 3 T11: 0.4473 T22: 0.3306 REMARK 3 T33: 0.3173 T12: -0.1857 REMARK 3 T13: 0.0037 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.0084 L22: 1.3839 REMARK 3 L33: 2.9675 L12: 0.6300 REMARK 3 L13: 0.8158 L23: 0.9543 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: 0.0149 S13: -0.1369 REMARK 3 S21: -0.0152 S22: -0.0456 S23: -0.0345 REMARK 3 S31: 0.3009 S32: -0.0517 S33: -0.0192 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IS2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38932 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3P96 REMARK 200 REMARK 200 REMARK: MYCOBACTERIUM AVIUM SERB2 PROTEIN WAS CRYSTALLIZED IN REMARK 200 PRESENCE OF ITS INHIBITOR ROSANILINE (A PINK COLOR COMPOUND) AND REMARK 200 PINK COLOURED CRYSTALS WERE DIFFRACTED, HOWEVER NO DENSITY OF REMARK 200 ROSANILINE WAS FOUND ON SOLVING THE CRYSTAL DATA. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 8000, 0.1M MAGNESIUM ACETATE REMARK 280 TETRAHYDRATE, 0.1M HEPES PH 6.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.23800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.74700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.70600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.23800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.74700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.70600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.23800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.74700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.70600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.23800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.74700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.70600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 135 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 210 CG CD OE1 NE2 REMARK 470 ASP A 216 CG OD1 OD2 REMARK 470 MET A 219 CG SD CE REMARK 470 ARG A 220 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 227 CG CD OE1 NE2 REMARK 470 GLN A 231 CG CD OE1 NE2 REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 GLN A 250 CG CD OE1 NE2 REMARK 470 ARG A 279 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 284 CG CD REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 GLU A 288 CD OE1 OE2 REMARK 470 LYS A 363 CD CE NZ REMARK 470 ARG A 367 NE CZ NH1 NH2 REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 713 O HOH A 721 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 6 -34.70 -155.85 REMARK 500 SER A 86 -98.00 -116.42 REMARK 500 ASP A 87 -33.92 70.20 REMARK 500 ARG A 105 74.40 -155.67 REMARK 500 ALA A 180 57.93 -97.24 REMARK 500 THR A 191 -73.80 -121.44 REMARK 500 ASP A 316 -160.93 -105.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 722 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 723 DISTANCE = 9.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 187 OD2 REMARK 620 2 ASP A 189 O 88.4 REMARK 620 3 ASP A 343 OD1 85.0 89.8 REMARK 620 4 HOH A 623 O 88.2 175.2 86.5 REMARK 620 5 HOH A 650 O 170.6 95.2 86.3 87.6 REMARK 620 6 HOH A 681 O 99.4 96.9 172.0 87.0 88.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IT0 RELATED DB: PDB REMARK 900 RELATED ID: 5IT4 RELATED DB: PDB DBREF 5IS2 A 5 400 UNP A0QJI1 SERB_MYCA1 5 400 SEQADV 5IS2 ARG A 31 UNP A0QJI1 GLY 31 ENGINEERED MUTATION SEQRES 1 A 396 PRO LYS VAL SER VAL LEU ILE THR VAL THR GLY VAL ASP SEQRES 2 A 396 GLN PRO GLY VAL THR ALA THR LEU PHE GLU VAL LEU SER SEQRES 3 A 396 ARG HIS GLY VAL GLU LEU LEU ASN VAL GLU GLN VAL VAL SEQRES 4 A 396 ILE ARG HIS ARG LEU THR LEU GLY VAL LEU VAL CYS CYS SEQRES 5 A 396 PRO ALA ASP VAL ALA ASP GLY PRO ALA LEU ARG HIS ASP SEQRES 6 A 396 VAL GLU ALA ALA ILE ARG LYS VAL GLY LEU ASP VAL SER SEQRES 7 A 396 ILE GLU ARG SER ASP ASP VAL PRO ILE ILE ARG GLU PRO SEQRES 8 A 396 SER THR HIS THR ILE PHE VAL LEU GLY ARG PRO ILE THR SEQRES 9 A 396 ALA ALA ALA PHE GLY ALA VAL ALA ARG GLU VAL ALA ALA SEQRES 10 A 396 LEU GLY VAL ASN ILE ASP LEU ILE ARG GLY VAL SER ASP SEQRES 11 A 396 TYR PRO VAL ILE GLY LEU GLU LEU ARG VAL SER VAL PRO SEQRES 12 A 396 PRO GLY ALA ASP GLY ALA LEU ARG THR ALA LEU ASN ARG SEQRES 13 A 396 VAL SER SER GLU GLU HIS VAL ASP VAL ALA VAL GLU ASP SEQRES 14 A 396 TYR THR LEU GLU ARG ARG ALA LYS ARG LEU ILE VAL PHE SEQRES 15 A 396 ASP VAL ASP SER THR LEU VAL GLN GLY GLU VAL ILE GLU SEQRES 16 A 396 MET LEU ALA ALA LYS ALA GLY ALA GLU GLY GLN VAL ALA SEQRES 17 A 396 ALA ILE THR ASP ALA ALA MET ARG GLY GLU LEU ASP PHE SEQRES 18 A 396 ALA GLN SER LEU GLN GLN ARG VAL ALA THR LEU ALA GLY SEQRES 19 A 396 LEU PRO ALA THR VAL ILE ASP GLU VAL ALA GLY GLN LEU SEQRES 20 A 396 GLU LEU MET PRO GLY ALA ARG THR THR LEU ARG THR LEU SEQRES 21 A 396 ARG ARG LEU GLY TYR ALA CYS GLY VAL VAL SER GLY GLY SEQRES 22 A 396 PHE ARG ARG ILE ILE GLU PRO LEU ALA GLU GLU LEU MET SEQRES 23 A 396 LEU ASP TYR VAL ALA ALA ASN GLU LEU GLU ILE VAL ASP SEQRES 24 A 396 GLY THR LEU THR GLY ARG VAL VAL GLY PRO ILE ILE ASP SEQRES 25 A 396 ARG ALA GLY LYS ALA THR ALA LEU ARG GLU PHE ALA GLN SEQRES 26 A 396 ARG ALA GLY VAL PRO MET ALA GLN THR VAL ALA VAL GLY SEQRES 27 A 396 ASP GLY ALA ASN ASP ILE ASP MET LEU ALA ALA ALA GLY SEQRES 28 A 396 LEU GLY ILE ALA PHE ASN ALA LYS PRO ALA LEU ARG GLU SEQRES 29 A 396 VAL ALA ASP ALA SER LEU SER HIS PRO TYR LEU ASP THR SEQRES 30 A 396 VAL LEU PHE LEU LEU GLY VAL THR ARG GLY GLU ILE GLU SEQRES 31 A 396 ALA ALA ASP ALA ILE ASP HET MG A 501 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *123(H2 O) HELIX 1 AA1 GLY A 20 ARG A 31 1 12 HELIX 2 AA2 PRO A 57 ASP A 62 1 6 HELIX 3 AA3 GLY A 63 VAL A 77 1 15 HELIX 4 AA4 THR A 108 LEU A 122 1 15 HELIX 5 AA5 ALA A 150 HIS A 166 1 17 HELIX 6 AA6 GLU A 196 ALA A 205 1 10 HELIX 7 AA7 GLN A 210 VAL A 211 5 2 HELIX 8 AA8 ALA A 213 ALA A 213 5 1 HELIX 9 AA9 ILE A 214 ARG A 220 1 7 HELIX 10 AB1 ASP A 224 THR A 235 1 12 HELIX 11 AB2 ALA A 241 GLY A 249 1 9 HELIX 12 AB3 GLY A 256 LEU A 267 1 12 HELIX 13 AB4 ARG A 279 LEU A 289 1 11 HELIX 14 AB5 ASP A 316 GLY A 332 1 17 HELIX 15 AB6 PRO A 334 ALA A 336 5 3 HELIX 16 AB7 GLY A 344 ASN A 346 5 3 HELIX 17 AB8 ASP A 347 ALA A 354 1 8 HELIX 18 AB9 LYS A 363 GLU A 368 1 6 HELIX 19 AC1 ASP A 380 LEU A 386 1 7 HELIX 20 AC2 THR A 389 ASP A 400 1 12 SHEET 1 AA1 4 GLU A 35 ILE A 44 0 SHEET 2 AA1 4 ARG A 47 CYS A 56 -1 O LEU A 53 N LEU A 37 SHEET 3 AA1 4 VAL A 7 VAL A 16 -1 N ILE A 11 O VAL A 52 SHEET 4 AA1 4 ASP A 80 ARG A 85 -1 O GLU A 84 N LEU A 10 SHEET 1 AA2 4 ASN A 125 SER A 133 0 SHEET 2 AA2 4 ILE A 138 SER A 145 -1 O GLU A 141 N ARG A 130 SHEET 3 AA2 4 HIS A 98 GLY A 104 -1 N VAL A 102 O LEU A 140 SHEET 4 AA2 4 ASP A 168 ASP A 173 -1 O GLU A 172 N THR A 99 SHEET 1 AA3 6 TYR A 293 ASN A 297 0 SHEET 2 AA3 6 ALA A 270 PHE A 278 1 N GLY A 277 O ASN A 297 SHEET 3 AA3 6 LEU A 183 PHE A 186 1 N ILE A 184 O ALA A 270 SHEET 4 AA3 6 THR A 338 GLY A 342 1 O VAL A 339 N LEU A 183 SHEET 5 AA3 6 LEU A 356 PHE A 360 1 O ILE A 358 N ALA A 340 SHEET 6 AA3 6 ALA A 372 LEU A 374 1 O ALA A 372 N ALA A 359 SHEET 1 AA4 2 LEU A 299 VAL A 302 0 SHEET 2 AA4 2 THR A 305 VAL A 310 -1 O THR A 305 N VAL A 302 LINK OD2 ASP A 187 MG MG A 501 1555 1555 1.91 LINK O ASP A 189 MG MG A 501 1555 1555 2.23 LINK OD1 ASP A 343 MG MG A 501 1555 1555 2.18 LINK MG MG A 501 O HOH A 623 1555 1555 2.22 LINK MG MG A 501 O HOH A 650 1555 1555 2.02 LINK MG MG A 501 O HOH A 681 1555 1555 2.06 CISPEP 1 ARG A 105 PRO A 106 0 6.02 CISPEP 2 TYR A 135 PRO A 136 0 -0.94 CISPEP 3 GLY A 312 PRO A 313 0 3.75 SITE 1 AC1 6 ASP A 187 ASP A 189 ASP A 343 HOH A 623 SITE 2 AC1 6 HOH A 650 HOH A 681 CRYST1 66.476 109.494 133.412 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015043 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007496 0.00000