HEADER TRANSFERASE/TRANSFERASE INHIBITOR 16-MAR-16 5ITA TITLE CRYSTAL STRUCTURE OF BRAF KINASE DOMAIN BOUND TO AZ-VEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 448-723; COMPND 5 SYNONYM: PROTO-ONCOGENE B-RAF,P94,V-RAF MURINE SARCOMA VIRAL ONCOGENE COMPND 6 HOMOLOG B1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRANSFERASE, KINASE AND INHIBITOR COMPLEX, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.WU,E.GAVATHIOTIS REVDAT 2 27-SEP-23 5ITA 1 REMARK REVDAT 1 10-AUG-16 5ITA 0 JRNL AUTH Z.KAROULIA,Y.WU,T.A.AHMED,X.QISHENG,J.BOLLARD,C.KREPLER, JRNL AUTH 2 X.WU,C.ZHANG,G.BOLLAG,M.HERLYM,J.A.FAGIN,A.LUJAMBIO, JRNL AUTH 3 E.GAVATHIOTIS,P.I.POULIKAKOS JRNL TITL AN INTEGRATED MODEL OF RAF INHIBITOR ACTION PREDICTS JRNL TITL 2 INHIBITOR ACTIVITY AGAINST ONCOGENIC BRAF SIGNALING JRNL REF CANCER CELL V. 30 1 2016 JRNL REFN ISSN 1535-6108 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 44423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 2302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7375 - 4.9071 0.96 2737 131 0.1870 0.2484 REMARK 3 2 4.9071 - 3.8966 1.00 2715 137 0.1539 0.1931 REMARK 3 3 3.8966 - 3.4046 1.00 2637 179 0.1871 0.2450 REMARK 3 4 3.4046 - 3.0935 1.00 2673 137 0.2044 0.2520 REMARK 3 5 3.0935 - 2.8719 1.00 2644 141 0.2224 0.2308 REMARK 3 6 2.8719 - 2.7026 1.00 2650 127 0.2182 0.2831 REMARK 3 7 2.7026 - 2.5673 1.00 2641 142 0.2095 0.2689 REMARK 3 8 2.5673 - 2.4556 1.00 2618 131 0.2148 0.2563 REMARK 3 9 2.4556 - 2.3611 1.00 2627 131 0.2014 0.2586 REMARK 3 10 2.3611 - 2.2796 1.00 2634 138 0.1892 0.2724 REMARK 3 11 2.2796 - 2.2084 1.00 2599 166 0.1988 0.2157 REMARK 3 12 2.2084 - 2.1452 1.00 2596 145 0.1991 0.2677 REMARK 3 13 2.1452 - 2.0888 1.00 2604 138 0.2159 0.2338 REMARK 3 14 2.0888 - 2.0378 1.00 2566 172 0.2114 0.2793 REMARK 3 15 2.0378 - 1.9915 1.00 2605 145 0.2316 0.2847 REMARK 3 16 1.9915 - 1.9491 0.99 2575 142 0.2497 0.2884 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4159 REMARK 3 ANGLE : 1.002 5607 REMARK 3 CHIRALITY : 0.058 607 REMARK 3 PLANARITY : 0.006 709 REMARK 3 DIHEDRAL : 17.376 2520 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 26.1936 -2.4030 -7.1197 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.2113 REMARK 3 T33: 0.1998 T12: 0.0006 REMARK 3 T13: 0.0241 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.7066 L22: 1.9812 REMARK 3 L33: 2.2141 L12: 0.2305 REMARK 3 L13: 0.4459 L23: 1.5434 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: -0.1256 S13: -0.0622 REMARK 3 S21: 0.2462 S22: 0.0266 S23: -0.0660 REMARK 3 S31: 0.3083 S32: -0.0881 S33: -0.0541 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ITA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219377. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44542 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.949 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3OG7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291.1K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.05250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.28350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.90850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.28350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.05250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.90850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 427 REMARK 465 GLY A 428 REMARK 465 SER A 429 REMARK 465 SER A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 465 HIS A 433 REMARK 465 HIS A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 SER A 437 REMARK 465 SER A 438 REMARK 465 GLY A 439 REMARK 465 LEU A 440 REMARK 465 VAL A 441 REMARK 465 PRO A 442 REMARK 465 ARG A 443 REMARK 465 GLY A 444 REMARK 465 SER A 445 REMARK 465 HIS A 446 REMARK 465 MET A 447 REMARK 465 ALA A 598 REMARK 465 THR A 599 REMARK 465 VAL A 600 REMARK 465 LYS A 601 REMARK 465 SER A 602 REMARK 465 ARG A 603 REMARK 465 TRP A 604 REMARK 465 SER A 605 REMARK 465 GLY A 606 REMARK 465 SER A 607 REMARK 465 HIS A 608 REMARK 465 GLN A 609 REMARK 465 PHE A 610 REMARK 465 GLU A 611 REMARK 465 GLN A 612 REMARK 465 LEU A 613 REMARK 465 SER A 614 REMARK 465 GLY A 615 REMARK 465 GLN A 628 REMARK 465 ASP A 629 REMARK 465 SER A 630 REMARK 465 ARG A 719 REMARK 465 GLU A 720 REMARK 465 LEU A 721 REMARK 465 SER A 722 REMARK 465 GLY A 723 REMARK 465 MET B 427 REMARK 465 GLY B 428 REMARK 465 SER B 429 REMARK 465 SER B 430 REMARK 465 HIS B 431 REMARK 465 HIS B 432 REMARK 465 HIS B 433 REMARK 465 HIS B 434 REMARK 465 HIS B 435 REMARK 465 HIS B 436 REMARK 465 SER B 437 REMARK 465 SER B 438 REMARK 465 GLY B 439 REMARK 465 LEU B 440 REMARK 465 VAL B 441 REMARK 465 PRO B 442 REMARK 465 ARG B 443 REMARK 465 GLY B 444 REMARK 465 SER B 445 REMARK 465 HIS B 446 REMARK 465 MET B 447 REMARK 465 GLY B 466 REMARK 465 SER B 467 REMARK 465 PHE B 468 REMARK 465 GLY B 596 REMARK 465 LEU B 597 REMARK 465 ALA B 598 REMARK 465 THR B 599 REMARK 465 VAL B 600 REMARK 465 LYS B 601 REMARK 465 SER B 602 REMARK 465 ARG B 603 REMARK 465 TRP B 604 REMARK 465 SER B 605 REMARK 465 GLY B 606 REMARK 465 SER B 607 REMARK 465 HIS B 608 REMARK 465 GLN B 609 REMARK 465 PHE B 610 REMARK 465 GLU B 611 REMARK 465 GLN B 612 REMARK 465 LEU B 613 REMARK 465 ASP B 629 REMARK 465 SER B 722 REMARK 465 GLY B 723 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 522 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 700 OE1 GLU B 703 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 700 CB LYS B 700 CG 0.174 REMARK 500 GLU B 703 CB GLU B 703 CG -0.194 REMARK 500 GLU B 703 CD GLU B 703 OE1 -0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 717 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 476 103.83 -164.09 REMARK 500 THR A 488 -73.53 -126.91 REMARK 500 ARG A 575 -8.74 78.17 REMARK 500 ASP A 576 39.55 -149.78 REMARK 500 TRP B 476 101.22 -162.00 REMARK 500 ARG B 575 -4.35 76.82 REMARK 500 ASP B 576 41.16 -149.95 REMARK 500 ASP B 587 -5.34 66.96 REMARK 500 ASP B 594 63.43 61.94 REMARK 500 ARG B 626 8.27 -62.50 REMARK 500 ASN B 660 30.50 -97.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6DC A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6DC B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RZV RELATED DB: PDB REMARK 900 RELATED ID: 5ISS RELATED DB: PDB REMARK 900 RELATED ID: 4RZW RELATED DB: PDB DBREF 5ITA A 448 723 UNP P15056 BRAF_HUMAN 448 723 DBREF 5ITA B 448 723 UNP P15056 BRAF_HUMAN 448 723 SEQADV 5ITA MET A 427 UNP P15056 INITIATING METHIONINE SEQADV 5ITA GLY A 428 UNP P15056 EXPRESSION TAG SEQADV 5ITA SER A 429 UNP P15056 EXPRESSION TAG SEQADV 5ITA SER A 430 UNP P15056 EXPRESSION TAG SEQADV 5ITA HIS A 431 UNP P15056 EXPRESSION TAG SEQADV 5ITA HIS A 432 UNP P15056 EXPRESSION TAG SEQADV 5ITA HIS A 433 UNP P15056 EXPRESSION TAG SEQADV 5ITA HIS A 434 UNP P15056 EXPRESSION TAG SEQADV 5ITA HIS A 435 UNP P15056 EXPRESSION TAG SEQADV 5ITA HIS A 436 UNP P15056 EXPRESSION TAG SEQADV 5ITA SER A 437 UNP P15056 EXPRESSION TAG SEQADV 5ITA SER A 438 UNP P15056 EXPRESSION TAG SEQADV 5ITA GLY A 439 UNP P15056 EXPRESSION TAG SEQADV 5ITA LEU A 440 UNP P15056 EXPRESSION TAG SEQADV 5ITA VAL A 441 UNP P15056 EXPRESSION TAG SEQADV 5ITA PRO A 442 UNP P15056 EXPRESSION TAG SEQADV 5ITA ARG A 443 UNP P15056 EXPRESSION TAG SEQADV 5ITA GLY A 444 UNP P15056 EXPRESSION TAG SEQADV 5ITA SER A 445 UNP P15056 EXPRESSION TAG SEQADV 5ITA HIS A 446 UNP P15056 EXPRESSION TAG SEQADV 5ITA MET A 447 UNP P15056 EXPRESSION TAG SEQADV 5ITA ALA A 543 UNP P15056 ILE 543 ENGINEERED MUTATION SEQADV 5ITA SER A 544 UNP P15056 ILE 544 ENGINEERED MUTATION SEQADV 5ITA LYS A 551 UNP P15056 ILE 551 ENGINEERED MUTATION SEQADV 5ITA ARG A 562 UNP P15056 GLN 562 ENGINEERED MUTATION SEQADV 5ITA ASN A 588 UNP P15056 LEU 588 ENGINEERED MUTATION SEQADV 5ITA SER A 630 UNP P15056 LYS 630 ENGINEERED MUTATION SEQADV 5ITA GLU A 667 UNP P15056 PHE 667 ENGINEERED MUTATION SEQADV 5ITA SER A 673 UNP P15056 TYR 673 ENGINEERED MUTATION SEQADV 5ITA ARG A 688 UNP P15056 ALA 688 ENGINEERED MUTATION SEQADV 5ITA SER A 706 UNP P15056 LEU 706 ENGINEERED MUTATION SEQADV 5ITA ARG A 709 UNP P15056 GLN 709 ENGINEERED MUTATION SEQADV 5ITA GLU A 713 UNP P15056 SER 713 ENGINEERED MUTATION SEQADV 5ITA GLU A 716 UNP P15056 LEU 716 ENGINEERED MUTATION SEQADV 5ITA GLU A 720 UNP P15056 SER 720 ENGINEERED MUTATION SEQADV 5ITA SER A 722 UNP P15056 PRO 722 ENGINEERED MUTATION SEQADV 5ITA GLY A 723 UNP P15056 LYS 723 ENGINEERED MUTATION SEQADV 5ITA MET B 427 UNP P15056 INITIATING METHIONINE SEQADV 5ITA GLY B 428 UNP P15056 EXPRESSION TAG SEQADV 5ITA SER B 429 UNP P15056 EXPRESSION TAG SEQADV 5ITA SER B 430 UNP P15056 EXPRESSION TAG SEQADV 5ITA HIS B 431 UNP P15056 EXPRESSION TAG SEQADV 5ITA HIS B 432 UNP P15056 EXPRESSION TAG SEQADV 5ITA HIS B 433 UNP P15056 EXPRESSION TAG SEQADV 5ITA HIS B 434 UNP P15056 EXPRESSION TAG SEQADV 5ITA HIS B 435 UNP P15056 EXPRESSION TAG SEQADV 5ITA HIS B 436 UNP P15056 EXPRESSION TAG SEQADV 5ITA SER B 437 UNP P15056 EXPRESSION TAG SEQADV 5ITA SER B 438 UNP P15056 EXPRESSION TAG SEQADV 5ITA GLY B 439 UNP P15056 EXPRESSION TAG SEQADV 5ITA LEU B 440 UNP P15056 EXPRESSION TAG SEQADV 5ITA VAL B 441 UNP P15056 EXPRESSION TAG SEQADV 5ITA PRO B 442 UNP P15056 EXPRESSION TAG SEQADV 5ITA ARG B 443 UNP P15056 EXPRESSION TAG SEQADV 5ITA GLY B 444 UNP P15056 EXPRESSION TAG SEQADV 5ITA SER B 445 UNP P15056 EXPRESSION TAG SEQADV 5ITA HIS B 446 UNP P15056 EXPRESSION TAG SEQADV 5ITA MET B 447 UNP P15056 EXPRESSION TAG SEQADV 5ITA ALA B 543 UNP P15056 ILE 543 ENGINEERED MUTATION SEQADV 5ITA SER B 544 UNP P15056 ILE 544 ENGINEERED MUTATION SEQADV 5ITA LYS B 551 UNP P15056 ILE 551 ENGINEERED MUTATION SEQADV 5ITA ARG B 562 UNP P15056 GLN 562 ENGINEERED MUTATION SEQADV 5ITA ASN B 588 UNP P15056 LEU 588 ENGINEERED MUTATION SEQADV 5ITA SER B 630 UNP P15056 LYS 630 ENGINEERED MUTATION SEQADV 5ITA GLU B 667 UNP P15056 PHE 667 ENGINEERED MUTATION SEQADV 5ITA SER B 673 UNP P15056 TYR 673 ENGINEERED MUTATION SEQADV 5ITA ARG B 688 UNP P15056 ALA 688 ENGINEERED MUTATION SEQADV 5ITA SER B 706 UNP P15056 LEU 706 ENGINEERED MUTATION SEQADV 5ITA ARG B 709 UNP P15056 GLN 709 ENGINEERED MUTATION SEQADV 5ITA GLU B 713 UNP P15056 SER 713 ENGINEERED MUTATION SEQADV 5ITA GLU B 716 UNP P15056 LEU 716 ENGINEERED MUTATION SEQADV 5ITA GLU B 720 UNP P15056 SER 720 ENGINEERED MUTATION SEQADV 5ITA SER B 722 UNP P15056 PRO 722 ENGINEERED MUTATION SEQADV 5ITA GLY B 723 UNP P15056 LYS 723 ENGINEERED MUTATION SEQRES 1 A 297 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 297 LEU VAL PRO ARG GLY SER HIS MET ASP ASP TRP GLU ILE SEQRES 3 A 297 PRO ASP GLY GLN ILE THR VAL GLY GLN ARG ILE GLY SER SEQRES 4 A 297 GLY SER PHE GLY THR VAL TYR LYS GLY LYS TRP HIS GLY SEQRES 5 A 297 ASP VAL ALA VAL LYS MET LEU ASN VAL THR ALA PRO THR SEQRES 6 A 297 PRO GLN GLN LEU GLN ALA PHE LYS ASN GLU VAL GLY VAL SEQRES 7 A 297 LEU ARG LYS THR ARG HIS VAL ASN ILE LEU LEU PHE MET SEQRES 8 A 297 GLY TYR SER THR LYS PRO GLN LEU ALA ILE VAL THR GLN SEQRES 9 A 297 TRP CYS GLU GLY SER SER LEU TYR HIS HIS LEU HIS ALA SEQRES 10 A 297 SER GLU THR LYS PHE GLU MET LYS LYS LEU ILE ASP ILE SEQRES 11 A 297 ALA ARG GLN THR ALA ARG GLY MET ASP TYR LEU HIS ALA SEQRES 12 A 297 LYS SER ILE ILE HIS ARG ASP LEU LYS SER ASN ASN ILE SEQRES 13 A 297 PHE LEU HIS GLU ASP ASN THR VAL LYS ILE GLY ASP PHE SEQRES 14 A 297 GLY LEU ALA THR VAL LYS SER ARG TRP SER GLY SER HIS SEQRES 15 A 297 GLN PHE GLU GLN LEU SER GLY SER ILE LEU TRP MET ALA SEQRES 16 A 297 PRO GLU VAL ILE ARG MET GLN ASP SER ASN PRO TYR SER SEQRES 17 A 297 PHE GLN SER ASP VAL TYR ALA PHE GLY ILE VAL LEU TYR SEQRES 18 A 297 GLU LEU MET THR GLY GLN LEU PRO TYR SER ASN ILE ASN SEQRES 19 A 297 ASN ARG ASP GLN ILE ILE GLU MET VAL GLY ARG GLY SER SEQRES 20 A 297 LEU SER PRO ASP LEU SER LYS VAL ARG SER ASN CYS PRO SEQRES 21 A 297 LYS ARG MET LYS ARG LEU MET ALA GLU CYS LEU LYS LYS SEQRES 22 A 297 LYS ARG ASP GLU ARG PRO SER PHE PRO ARG ILE LEU ALA SEQRES 23 A 297 GLU ILE GLU GLU LEU ALA ARG GLU LEU SER GLY SEQRES 1 B 297 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 297 LEU VAL PRO ARG GLY SER HIS MET ASP ASP TRP GLU ILE SEQRES 3 B 297 PRO ASP GLY GLN ILE THR VAL GLY GLN ARG ILE GLY SER SEQRES 4 B 297 GLY SER PHE GLY THR VAL TYR LYS GLY LYS TRP HIS GLY SEQRES 5 B 297 ASP VAL ALA VAL LYS MET LEU ASN VAL THR ALA PRO THR SEQRES 6 B 297 PRO GLN GLN LEU GLN ALA PHE LYS ASN GLU VAL GLY VAL SEQRES 7 B 297 LEU ARG LYS THR ARG HIS VAL ASN ILE LEU LEU PHE MET SEQRES 8 B 297 GLY TYR SER THR LYS PRO GLN LEU ALA ILE VAL THR GLN SEQRES 9 B 297 TRP CYS GLU GLY SER SER LEU TYR HIS HIS LEU HIS ALA SEQRES 10 B 297 SER GLU THR LYS PHE GLU MET LYS LYS LEU ILE ASP ILE SEQRES 11 B 297 ALA ARG GLN THR ALA ARG GLY MET ASP TYR LEU HIS ALA SEQRES 12 B 297 LYS SER ILE ILE HIS ARG ASP LEU LYS SER ASN ASN ILE SEQRES 13 B 297 PHE LEU HIS GLU ASP ASN THR VAL LYS ILE GLY ASP PHE SEQRES 14 B 297 GLY LEU ALA THR VAL LYS SER ARG TRP SER GLY SER HIS SEQRES 15 B 297 GLN PHE GLU GLN LEU SER GLY SER ILE LEU TRP MET ALA SEQRES 16 B 297 PRO GLU VAL ILE ARG MET GLN ASP SER ASN PRO TYR SER SEQRES 17 B 297 PHE GLN SER ASP VAL TYR ALA PHE GLY ILE VAL LEU TYR SEQRES 18 B 297 GLU LEU MET THR GLY GLN LEU PRO TYR SER ASN ILE ASN SEQRES 19 B 297 ASN ARG ASP GLN ILE ILE GLU MET VAL GLY ARG GLY SER SEQRES 20 B 297 LEU SER PRO ASP LEU SER LYS VAL ARG SER ASN CYS PRO SEQRES 21 B 297 LYS ARG MET LYS ARG LEU MET ALA GLU CYS LEU LYS LYS SEQRES 22 B 297 LYS ARG ASP GLU ARG PRO SER PHE PRO ARG ILE LEU ALA SEQRES 23 B 297 GLU ILE GLU GLU LEU ALA ARG GLU LEU SER GLY HET 6DC A 801 28 HET 6DC B 801 28 HETNAM 6DC N-{2-CYANO-3-[(3-METHYL-4-OXO-3,4-DIHYDROQUINAZOLIN-6- HETNAM 2 6DC YL)AMINO]PHENYL}PROPANE-1-SULFONAMIDE FORMUL 3 6DC 2(C19 H19 N5 O3 S) FORMUL 5 HOH *99(H2 O) HELIX 1 AA1 THR A 491 LYS A 507 1 17 HELIX 2 AA2 SER A 536 ALA A 543 1 8 HELIX 3 AA3 GLU A 549 LYS A 570 1 22 HELIX 4 AA4 LYS A 578 ASN A 580 5 3 HELIX 5 AA5 GLU A 586 ASN A 588 5 3 HELIX 6 AA6 SER A 616 MET A 620 5 5 HELIX 7 AA7 ALA A 621 ARG A 626 1 6 HELIX 8 AA8 SER A 634 GLY A 652 1 19 HELIX 9 AA9 ASN A 661 ARG A 671 1 11 HELIX 10 AB1 ASP A 677 VAL A 681 5 5 HELIX 11 AB2 PRO A 686 LEU A 697 1 12 HELIX 12 AB3 LYS A 700 ARG A 704 5 5 HELIX 13 AB4 SER A 706 ALA A 718 1 13 HELIX 14 AB5 THR B 491 ARG B 506 1 16 HELIX 15 AB6 SER B 536 ALA B 543 1 8 HELIX 16 AB7 GLU B 549 LYS B 570 1 22 HELIX 17 AB8 LYS B 578 ASN B 580 5 3 HELIX 18 AB9 GLU B 586 ASN B 588 5 3 HELIX 19 AC1 SER B 616 MET B 620 5 5 HELIX 20 AC2 ALA B 621 ARG B 626 1 6 HELIX 21 AC3 SER B 634 GLY B 652 1 19 HELIX 22 AC4 ASN B 661 ARG B 671 1 11 HELIX 23 AC5 ASP B 677 VAL B 681 5 5 HELIX 24 AC6 PRO B 686 LEU B 697 1 12 HELIX 25 AC7 LYS B 700 ARG B 704 5 5 HELIX 26 AC8 SER B 706 ALA B 718 1 13 SHEET 1 AA1 5 THR A 458 GLY A 466 0 SHEET 2 AA1 5 GLY A 469 LYS A 475 -1 O LYS A 473 N GLY A 460 SHEET 3 AA1 5 ASP A 479 LEU A 485 -1 O MET A 484 N THR A 470 SHEET 4 AA1 5 ALA A 526 GLN A 530 -1 O ILE A 527 N LYS A 483 SHEET 5 AA1 5 PHE A 516 SER A 520 -1 N MET A 517 O VAL A 528 SHEET 1 AA2 2 ILE A 582 HIS A 585 0 SHEET 2 AA2 2 THR A 589 ILE A 592 -1 O LYS A 591 N PHE A 583 SHEET 1 AA3 5 THR B 458 GLY B 464 0 SHEET 2 AA3 5 THR B 470 LYS B 475 -1 O VAL B 471 N GLY B 464 SHEET 3 AA3 5 ASP B 479 MET B 484 -1 O VAL B 482 N TYR B 472 SHEET 4 AA3 5 ALA B 526 GLN B 530 -1 O THR B 529 N ALA B 481 SHEET 5 AA3 5 PHE B 516 SER B 520 -1 N GLY B 518 O VAL B 528 SHEET 1 AA4 2 ILE B 582 HIS B 585 0 SHEET 2 AA4 2 THR B 589 ILE B 592 -1 O THR B 589 N HIS B 585 CISPEP 1 LYS A 522 PRO A 523 0 6.47 CISPEP 2 LYS B 522 PRO B 523 0 -2.68 SITE 1 AC1 15 ILE A 463 ALA A 481 LYS A 483 LEU A 514 SITE 2 AC1 15 THR A 529 GLN A 530 TRP A 531 CYS A 532 SITE 3 AC1 15 ASN A 581 PHE A 583 GLY A 593 ASP A 594 SITE 4 AC1 15 PHE A 595 GLY A 596 HOH A 949 SITE 1 AC2 14 ILE B 463 ALA B 481 LYS B 483 LEU B 505 SITE 2 AC2 14 LEU B 514 THR B 529 GLN B 530 TRP B 531 SITE 3 AC2 14 CYS B 532 PHE B 583 GLY B 593 ASP B 594 SITE 4 AC2 14 PHE B 595 HOH B 928 CRYST1 52.105 103.817 110.567 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019192 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009632 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009044 0.00000