HEADER SUGAR BINDING PROTEIN 18-MAR-16 5IUQ TITLE GALECTIN-3C IN COMPLEX WITH BISAMIDO-THIOGALACTOSIDE DERIVATIVE 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN-3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAL-3,35 KDA LECTIN,CARBOHYDRATE-BINDING PROTEIN 35,CBP 35, COMPND 5 GALACTOSE-SPECIFIC LECTIN 3,GALACTOSIDE-BINDING PROTEIN,GALBP,IGE- COMPND 6 BINDING PROTEIN,L-31,LAMININ-BINDING PROTEIN,LECTIN L-29,MAC-2 COMPND 7 ANTIGEN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LGALS3, MAC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GAL3C, CRD, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.-L.NORESSON,O.AURELIUS,C.T.OBERG,O.ENGSTROM,A.P.SUNDIN,M.HAKANSSON, AUTHOR 2 D.T.LOGAN,H.LEFFLER,U.J.NILSSON REVDAT 3 10-JAN-24 5IUQ 1 REMARK REVDAT 2 17-JAN-18 5IUQ 1 REMARK REVDAT 1 29-MAR-17 5IUQ 0 JRNL AUTH A.-L.NORESSON,O.AURELIUS,C.T.OBERG,O.ENGSTROM,A.P.SUNDIN, JRNL AUTH 2 M.HAKANSSON,D.LOGAN,H.LEFFLER,U.J.NILSSON JRNL TITL CONTROLLING PROTEIN:LIGAND COMPLEX CONFORMATION THROUGH JRNL TITL 2 TUNING OF ARGININE-ARENE INTERACTIONS: SYNTHETIC AND JRNL TITL 3 STRUCTURAL STUDIES WITH 3-BENZAMIDO-2-SULFO-GALACTOSIDES AS JRNL TITL 4 GALECTIN-3 LIGANDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 50258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7860 - 2.9370 1.00 2868 134 0.1509 0.1602 REMARK 3 2 2.9370 - 2.3315 1.00 2743 130 0.1474 0.1630 REMARK 3 3 2.3315 - 2.0369 1.00 2703 138 0.1274 0.1440 REMARK 3 4 2.0369 - 1.8507 1.00 2667 150 0.1226 0.1533 REMARK 3 5 1.8507 - 1.7181 1.00 2627 166 0.1365 0.1621 REMARK 3 6 1.7181 - 1.6168 1.00 2641 153 0.1384 0.1462 REMARK 3 7 1.6168 - 1.5358 1.00 2662 137 0.1421 0.1760 REMARK 3 8 1.5358 - 1.4690 1.00 2636 144 0.1544 0.1930 REMARK 3 9 1.4690 - 1.4124 1.00 2627 145 0.1578 0.1760 REMARK 3 10 1.4124 - 1.3637 1.00 2659 131 0.1766 0.2076 REMARK 3 11 1.3637 - 1.3210 1.00 2626 138 0.1793 0.2235 REMARK 3 12 1.3210 - 1.2833 1.00 2592 133 0.1811 0.2185 REMARK 3 13 1.2833 - 1.2495 1.00 2656 131 0.1920 0.1851 REMARK 3 14 1.2495 - 1.2190 0.99 2618 145 0.1989 0.2134 REMARK 3 15 1.2190 - 1.1913 0.99 2568 152 0.2152 0.2138 REMARK 3 16 1.1913 - 1.1659 0.99 2588 165 0.2144 0.2202 REMARK 3 17 1.1659 - 1.1426 1.00 2628 144 0.2313 0.2850 REMARK 3 18 1.1426 - 1.1211 0.99 2570 143 0.2579 0.2211 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.025 1318 REMARK 3 ANGLE : 2.286 1825 REMARK 3 CHIRALITY : 0.129 206 REMARK 3 PLANARITY : 0.014 238 REMARK 3 DIHEDRAL : 15.317 528 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2063 1.8048 1.8864 REMARK 3 T TENSOR REMARK 3 T11: 0.0847 T22: 0.1535 REMARK 3 T33: 0.1816 T12: -0.0177 REMARK 3 T13: 0.0401 T23: -0.0514 REMARK 3 L TENSOR REMARK 3 L11: 2.5317 L22: 6.5123 REMARK 3 L33: 2.1025 L12: 1.8092 REMARK 3 L13: 0.4926 L23: 1.2237 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: 0.0854 S13: 0.1070 REMARK 3 S21: -0.1016 S22: 0.2369 S23: -0.3407 REMARK 3 S31: -0.1957 S32: 0.3514 S33: -0.2652 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7755 -7.7328 7.8165 REMARK 3 T TENSOR REMARK 3 T11: 0.0839 T22: 0.0925 REMARK 3 T33: 0.0995 T12: 0.0084 REMARK 3 T13: 0.0048 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.5358 L22: 3.2339 REMARK 3 L33: 2.2401 L12: 0.1920 REMARK 3 L13: 0.4604 L23: 1.8975 REMARK 3 S TENSOR REMARK 3 S11: 0.1023 S12: -0.0320 S13: -0.0232 REMARK 3 S21: 0.2256 S22: 0.0502 S23: 0.0084 REMARK 3 S31: 0.1848 S32: 0.0841 S33: -0.1452 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5125 4.0340 2.9173 REMARK 3 T TENSOR REMARK 3 T11: 0.0859 T22: 0.0647 REMARK 3 T33: 0.0812 T12: 0.0052 REMARK 3 T13: 0.0113 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.8091 L22: 1.1799 REMARK 3 L33: 2.4172 L12: 0.1585 REMARK 3 L13: 0.5091 L23: 1.2815 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: 0.0043 S13: 0.1151 REMARK 3 S21: -0.1866 S22: 0.0517 S23: -0.0501 REMARK 3 S31: -0.3192 S32: 0.0132 S33: -0.0231 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7876 11.2309 9.8138 REMARK 3 T TENSOR REMARK 3 T11: 0.1509 T22: 0.1206 REMARK 3 T33: 0.1263 T12: 0.0488 REMARK 3 T13: 0.0045 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.8783 L22: 4.1941 REMARK 3 L33: 1.8650 L12: -0.3501 REMARK 3 L13: -0.5815 L23: 2.4392 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: 0.0188 S13: 0.1691 REMARK 3 S21: -0.1303 S22: -0.0943 S23: 0.1567 REMARK 3 S31: -0.3454 S32: -0.1465 S33: 0.0401 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6030 0.9738 -5.7512 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.1530 REMARK 3 T33: 0.1004 T12: 0.0535 REMARK 3 T13: -0.0397 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 3.4043 L22: 4.0419 REMARK 3 L33: 2.2349 L12: -1.8607 REMARK 3 L13: -0.4679 L23: 2.3641 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: 0.1540 S13: 0.0763 REMARK 3 S21: -0.3286 S22: -0.1747 S23: 0.1031 REMARK 3 S31: -0.5201 S32: -0.3923 S33: 0.0446 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3361 6.7338 14.2807 REMARK 3 T TENSOR REMARK 3 T11: 0.1281 T22: 0.1326 REMARK 3 T33: 0.1372 T12: 0.0259 REMARK 3 T13: 0.0017 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 3.4015 L22: 0.3483 REMARK 3 L33: 1.4162 L12: 0.8109 REMARK 3 L13: 1.0643 L23: 0.3087 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: -0.1779 S13: 0.0813 REMARK 3 S21: 0.0636 S22: -0.0812 S23: 0.1017 REMARK 3 S31: -0.0519 S32: -0.1824 S33: 0.0836 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 197 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2093 -6.2949 12.4896 REMARK 3 T TENSOR REMARK 3 T11: 0.0779 T22: 0.0775 REMARK 3 T33: 0.0645 T12: -0.0139 REMARK 3 T13: 0.0067 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.2701 L22: 3.2097 REMARK 3 L33: 3.0796 L12: 1.1146 REMARK 3 L13: 1.3490 L23: 2.1827 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: -0.0637 S13: -0.0973 REMARK 3 S21: 0.1047 S22: -0.0156 S23: -0.0026 REMARK 3 S31: 0.2298 S32: -0.1569 S33: -0.0428 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2575 -9.3923 2.6507 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.0809 REMARK 3 T33: 0.0726 T12: -0.0158 REMARK 3 T13: 0.0031 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.0872 L22: 1.0745 REMARK 3 L33: 1.2926 L12: 0.3358 REMARK 3 L13: 0.9659 L23: 0.6614 REMARK 3 S TENSOR REMARK 3 S11: 0.0495 S12: 0.0132 S13: -0.0670 REMARK 3 S21: 0.0448 S22: -0.0711 S23: 0.0641 REMARK 3 S31: 0.1209 S32: -0.2109 S33: 0.0382 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 233 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9352 -2.2725 7.1101 REMARK 3 T TENSOR REMARK 3 T11: 0.0615 T22: 0.1136 REMARK 3 T33: 0.1054 T12: 0.0128 REMARK 3 T13: 0.0224 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.3646 L22: 3.4715 REMARK 3 L33: 1.9253 L12: -0.2385 REMARK 3 L13: 0.9120 L23: 0.4603 REMARK 3 S TENSOR REMARK 3 S11: 0.0686 S12: -0.0244 S13: -0.1014 REMARK 3 S21: 0.1529 S22: 0.1177 S23: -0.0464 REMARK 3 S31: 0.0597 S32: 0.1905 S33: -0.1793 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : TOROIDAL MIRROR FOR HORIZONTAL REMARK 200 AND VERTICAL FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50259 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.120 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.760 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3ZSJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9 MG/ML GAL3C WITH A RESERVOIR OF 100 REMARK 280 MM TRIS-HCL PH 7.8, 300 MM NASCN, 100 MM MGCL2, 32% [W/V] REMARK 280 PEG6000, 20 MM 2-MERCAPTOETHANOL) COCRYSTALLISED WITH LACTOSE REMARK 280 (10 MM). LACTOSE DISPLACED BY SOAKING WITH LIGAND., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.03200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.10100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.77650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.10100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.03200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.77650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 113 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 447 O HOH A 532 1.13 REMARK 500 O HOH A 501 O HOH A 570 1.43 REMARK 500 O HOH A 471 O HOH A 544 1.43 REMARK 500 O HOH A 500 O HOH A 523 1.44 REMARK 500 O HOH A 485 O HOH A 565 1.50 REMARK 500 O PRO A 140 O HOH A 401 1.53 REMARK 500 O HOH A 455 O HOH A 563 1.53 REMARK 500 O HOH A 563 O HOH A 598 1.58 REMARK 500 O HOH A 527 O HOH A 547 1.66 REMARK 500 O HOH A 522 O HOH A 571 1.66 REMARK 500 OD1 ASN A 179 O HOH A 402 1.67 REMARK 500 O HOH A 454 O HOH A 489 1.68 REMARK 500 O HOH A 576 O HOH A 612 1.77 REMARK 500 OD2 ASP A 207 O HOH A 403 1.81 REMARK 500 O HOH A 515 O HOH A 571 1.81 REMARK 500 O HOH A 507 O HOH A 573 1.83 REMARK 500 O HOH A 471 O HOH A 580 1.84 REMARK 500 O HOH A 439 O HOH A 546 1.87 REMARK 500 O HOH A 565 O HOH A 577 1.87 REMARK 500 O HOH A 590 O HOH A 600 1.92 REMARK 500 O HOH A 423 O HOH A 577 1.95 REMARK 500 NH2 ARG A 183 O HOH A 404 2.01 REMARK 500 O HOH A 427 O HOH A 454 2.04 REMARK 500 O HOH A 423 O HOH A 565 2.05 REMARK 500 O HOH A 460 O HOH A 554 2.06 REMARK 500 O HOH A 433 O HOH A 533 2.11 REMARK 500 NE2 GLN A 220 O HOH A 405 2.12 REMARK 500 O HOH A 454 O HOH A 618 2.14 REMARK 500 O HOH A 417 O HOH A 476 2.15 REMARK 500 O HOH A 493 O HOH A 544 2.16 REMARK 500 O HOH A 543 O HOH A 586 2.17 REMARK 500 OD1 ASN A 119 O HOH A 406 2.19 REMARK 500 OD1 ASN A 119 O HOH A 407 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 513 O HOH A 578 2455 1.73 REMARK 500 O HOH A 402 O HOH A 413 2454 1.73 REMARK 500 O HOH A 520 O HOH A 600 4545 1.88 REMARK 500 O HOH A 462 O HOH A 505 4445 1.90 REMARK 500 O HOH A 427 O HOH A 496 4545 1.93 REMARK 500 O HOH A 553 O HOH A 564 2455 1.98 REMARK 500 O HOH A 538 O HOH A 572 3445 2.09 REMARK 500 O HOH A 513 O HOH A 603 3555 2.18 REMARK 500 O HOH A 543 O HOH A 606 2455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 141 C - N - CA ANGL. DEV. = 26.3 DEGREES REMARK 500 ARG A 151 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 168 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 129 -1.27 86.66 REMARK 500 ASN A 164 85.33 -154.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 622 DISTANCE = 6.28 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6E1 A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BLJ RELATED DB: PDB REMARK 900 OTHER GAL3C LIGAND COMPLEX PART OF THE SAME STUDY REMARK 900 RELATED ID: 4BLI RELATED DB: PDB REMARK 900 OTHER GAL3C LIGAND COMPLEX PART OF THE SAME STUDY REMARK 900 RELATED ID: 4BM8 RELATED DB: PDB REMARK 900 OTHER GAL3C LIGAND COMPLEX PART OF THE SAME STUDY DBREF 5IUQ A 113 250 UNP P17931 LEG3_HUMAN 113 250 SEQRES 1 A 138 PRO LEU ILE VAL PRO TYR ASN LEU PRO LEU PRO GLY GLY SEQRES 2 A 138 VAL VAL PRO ARG MET LEU ILE THR ILE LEU GLY THR VAL SEQRES 3 A 138 LYS PRO ASN ALA ASN ARG ILE ALA LEU ASP PHE GLN ARG SEQRES 4 A 138 GLY ASN ASP VAL ALA PHE HIS PHE ASN PRO ARG PHE ASN SEQRES 5 A 138 GLU ASN ASN ARG ARG VAL ILE VAL CYS ASN THR LYS LEU SEQRES 6 A 138 ASP ASN ASN TRP GLY ARG GLU GLU ARG GLN SER VAL PHE SEQRES 7 A 138 PRO PHE GLU SER GLY LYS PRO PHE LYS ILE GLN VAL LEU SEQRES 8 A 138 VAL GLU PRO ASP HIS PHE LYS VAL ALA VAL ASN ASP ALA SEQRES 9 A 138 HIS LEU LEU GLN TYR ASN HIS ARG VAL LYS LYS LEU ASN SEQRES 10 A 138 GLU ILE SER LYS LEU GLY ILE SER GLY ASP ILE ASP LEU SEQRES 11 A 138 THR SER ALA SER TYR THR MET ILE HET 6E1 A 301 51 HETNAM 6E1 3-DEOXY-3-[(2,3,5,6-TETRAFLUORO-4-METHOXYBENZENE-1- HETNAM 2 6E1 CARBONYL)AMINO]-BETA-D-GALACTOPYRANOSYL 3-DEOXY-3-[(2, HETNAM 3 6E1 3,5,6-TETRAFLUORO-4-METHOXYBENZENE-1-CARBONYL)AMINO]- HETNAM 4 6E1 1-THIO-BETA-D-GALACTOPYRANOSIDE FORMUL 2 6E1 C28 H28 F8 N2 O12 S FORMUL 3 HOH *222(H2 O) HELIX 1 AA1 LYS A 227 ILE A 231 5 5 SHEET 1 AA1 6 TYR A 118 PRO A 121 0 SHEET 2 AA1 6 LYS A 233 GLY A 238 -1 O LEU A 234 N LEU A 120 SHEET 3 AA1 6 ILE A 145 ARG A 151 -1 N GLN A 150 O LYS A 233 SHEET 4 AA1 6 ASP A 154 GLU A 165 -1 O PHE A 157 N PHE A 149 SHEET 5 AA1 6 ARG A 168 LEU A 177 -1 O VAL A 170 N ARG A 162 SHEET 6 AA1 6 ASN A 180 TRP A 181 -1 O ASN A 180 N LEU A 177 SHEET 1 AA2 6 TYR A 118 PRO A 121 0 SHEET 2 AA2 6 LYS A 233 GLY A 238 -1 O LEU A 234 N LEU A 120 SHEET 3 AA2 6 ILE A 145 ARG A 151 -1 N GLN A 150 O LYS A 233 SHEET 4 AA2 6 ASP A 154 GLU A 165 -1 O PHE A 157 N PHE A 149 SHEET 5 AA2 6 ARG A 168 LEU A 177 -1 O VAL A 170 N ARG A 162 SHEET 6 AA2 6 GLU A 185 GLN A 187 -1 O GLN A 187 N ILE A 171 SHEET 1 AA3 5 ALA A 216 ASN A 222 0 SHEET 2 AA3 5 HIS A 208 VAL A 213 -1 N VAL A 211 O LEU A 219 SHEET 3 AA3 5 PRO A 197 VAL A 204 -1 N LEU A 203 O LYS A 210 SHEET 4 AA3 5 MET A 130 VAL A 138 -1 N GLY A 136 O PHE A 198 SHEET 5 AA3 5 ILE A 240 MET A 249 -1 O THR A 248 N LEU A 131 CISPEP 1 VAL A 116 PRO A 117 0 -2.40 SITE 1 AC1 25 PRO A 113 LEU A 114 ILE A 115 ARG A 144 SITE 2 AC1 25 ALA A 146 HIS A 158 ASN A 160 ARG A 162 SITE 3 AC1 25 ASN A 174 TRP A 181 GLU A 184 ARG A 186 SITE 4 AC1 25 SER A 237 GLY A 238 HOH A 412 HOH A 466 SITE 5 AC1 25 HOH A 476 HOH A 485 HOH A 498 HOH A 499 SITE 6 AC1 25 HOH A 507 HOH A 508 HOH A 515 HOH A 522 SITE 7 AC1 25 HOH A 565 CRYST1 36.064 57.553 62.202 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027728 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017375 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016077 0.00000