HEADER IMMUNE SYSTEM 21-MAR-16 5IVZ TITLE CETUXIMAB FAB IN COMPLEX WITH ARG8CIR MEDITOPE VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CETUXIMAB FAB, LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CETUXIMAB FAB, HEAVY CHAIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MEDITOPE VARIANT; COMPND 11 CHAIN: E, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 4 ORGANISM_TAXID: 10090,9606; SOURCE 5 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 32644; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 10 ORGANISM_TAXID: 10090,9606; SOURCE 11 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 32644; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.P.BZYMEK,J.C.WILLIAMS REVDAT 6 20-NOV-24 5IVZ 1 REMARK REVDAT 5 15-NOV-23 5IVZ 1 LINK ATOM REVDAT 4 27-SEP-23 5IVZ 1 LINK REVDAT 3 13-DEC-17 5IVZ 1 JRNL REMARK REVDAT 2 09-NOV-16 5IVZ 1 JRNL REVDAT 1 26-OCT-16 5IVZ 0 JRNL AUTH K.P.BZYMEK,K.A.AVERY,Y.MA,D.A.HORNE,J.C.WILLIAMS JRNL TITL NATURAL AND NON-NATURAL AMINO-ACID SIDE-CHAIN SUBSTITUTIONS: JRNL TITL 2 AFFINITY AND DIFFRACTION STUDIES OF MEDITOPE-FAB COMPLEXES. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 72 820 2016 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 27834791 JRNL DOI 10.1107/S2053230X16016149 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 40196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2928 - 5.9682 1.00 2976 157 0.1996 0.2294 REMARK 3 2 5.9682 - 4.7411 1.00 2839 150 0.1441 0.1836 REMARK 3 3 4.7411 - 4.1429 1.00 2806 147 0.1302 0.1529 REMARK 3 4 4.1429 - 3.7647 0.97 2695 142 0.1625 0.2264 REMARK 3 5 3.7647 - 3.4951 0.88 2454 130 0.2156 0.2783 REMARK 3 6 3.4951 - 3.2892 1.00 2771 145 0.1750 0.2230 REMARK 3 7 3.2892 - 3.1246 1.00 2767 146 0.1902 0.2381 REMARK 3 8 3.1246 - 2.9887 1.00 2724 143 0.1869 0.2253 REMARK 3 9 2.9887 - 2.8737 1.00 2764 146 0.1800 0.2680 REMARK 3 10 2.8737 - 2.7746 1.00 2725 143 0.1796 0.2440 REMARK 3 11 2.7746 - 2.6878 1.00 2704 143 0.1806 0.2440 REMARK 3 12 2.6878 - 2.6110 1.00 2763 145 0.1816 0.2703 REMARK 3 13 2.6110 - 2.5423 0.99 2722 143 0.1974 0.2775 REMARK 3 14 2.5423 - 2.4803 0.91 2475 131 0.2019 0.3048 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6951 REMARK 3 ANGLE : 0.916 9480 REMARK 3 CHIRALITY : 0.054 1064 REMARK 3 PLANARITY : 0.005 1215 REMARK 3 DIHEDRAL : 12.046 4138 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40202 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 34.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 38.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 11.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4GW1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID, 0.1 M SODIUM REMARK 280 PHOSPHATE DIBASIC, 0.4 M POTASSIUM PHOSPHATE DIBASIC, 1.6 M REMARK 280 SODIUM PHOSPHATE MONOBASIC, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.17000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.02500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.28500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 106.02500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.17000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.28500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 134 REMARK 465 LYS B 135 REMARK 465 SER B 136 REMARK 465 THR B 137 REMARK 465 SER B 221 REMARK 465 SER D 133 REMARK 465 SER D 134 REMARK 465 LYS D 135 REMARK 465 SER D 136 REMARK 465 THR D 137 REMARK 465 SER D 138 REMARK 465 GLY D 139 REMARK 465 SER D 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 GLN B 1 CG CD OE1 NE2 REMARK 470 LYS C 169 CG CD CE NZ REMARK 470 GLN D 1 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 178 O HOH A 401 1.93 REMARK 500 O HOH D 398 O HOH D 403 1.94 REMARK 500 O GLY C 128 O HOH C 401 1.95 REMARK 500 O ALA C 144 O HOH C 402 2.00 REMARK 500 O HOH A 404 O HOH A 463 2.01 REMARK 500 O HOH B 512 O HOH B 516 2.01 REMARK 500 O HOH C 431 O HOH C 535 2.04 REMARK 500 OD2 ASP C 151 O HOH C 403 2.07 REMARK 500 O HOH C 492 O HOH D 377 2.07 REMARK 500 O HOH C 522 O HOH F 104 2.08 REMARK 500 O HOH B 459 O HOH B 500 2.09 REMARK 500 O HOH A 407 O HOH A 537 2.10 REMARK 500 O HOH C 463 O HOH C 494 2.10 REMARK 500 O HOH A 428 O HOH A 509 2.12 REMARK 500 O HOH A 505 O HOH B 417 2.12 REMARK 500 O HOH D 393 O HOH D 396 2.15 REMARK 500 O GLN A 155 O HOH A 402 2.17 REMARK 500 O HOH D 311 O HOH D 375 2.17 REMARK 500 O HOH A 521 O HOH B 501 2.18 REMARK 500 O1 PO4 C 301 O HOH C 404 2.19 REMARK 500 OG1 THR C 206 O HOH C 405 2.19 REMARK 500 O HOH C 549 O HOH C 550 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -38.11 70.30 REMARK 500 SER A 52 -1.42 -145.26 REMARK 500 ASN A 91 32.72 -141.42 REMARK 500 LYS A 190 -54.85 -127.35 REMARK 500 SER B 15 -0.04 77.47 REMARK 500 SER B 84 70.42 44.25 REMARK 500 ASP B 103 -169.48 -110.34 REMARK 500 ALA C 51 -45.22 73.87 REMARK 500 SER C 77 87.40 -159.00 REMARK 500 ALA C 84 173.05 178.28 REMARK 500 ASN C 91 34.23 -141.51 REMARK 500 SER D 15 -1.80 71.45 REMARK 500 SER D 84 73.68 48.55 REMARK 500 SER D 84 74.10 48.09 REMARK 500 SER D 118 146.75 -170.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 550 DISTANCE = 5.91 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HYQ RELATED DB: PDB REMARK 900 RELATED ID: 5I2I RELATED DB: PDB REMARK 900 RELATED ID: 5ICY RELATED DB: PDB REMARK 900 RELATED ID: 5ICX RELATED DB: PDB REMARK 900 RELATED ID: 5ICZ RELATED DB: PDB REMARK 900 RELATED ID: 5ID0 RELATED DB: PDB REMARK 900 RELATED ID: 5ID1 RELATED DB: PDB REMARK 900 RELATED ID: 5IOP RELATED DB: PDB REMARK 900 RELATED ID: 5IR1 RELATED DB: PDB REMARK 900 RELATED ID: 5ITF RELATED DB: PDB REMARK 900 RELATED ID: 5IV2 RELATED DB: PDB DBREF 5IVZ A 1 213 PDB 5IVZ 5IVZ 1 213 DBREF 5IVZ B 1 221 PDB 5IVZ 5IVZ 1 221 DBREF 5IVZ C 1 213 PDB 5IVZ 5IVZ 1 213 DBREF 5IVZ D 1 221 PDB 5IVZ 5IVZ 1 221 DBREF 5IVZ E 1 12 PDB 5IVZ 5IVZ 1 12 DBREF 5IVZ F 1 12 PDB 5IVZ 5IVZ 1 12 SEQRES 1 A 213 ASP ILE LEU LEU THR GLN SER PRO VAL ILE LEU SER VAL SEQRES 2 A 213 SER PRO GLY GLU ARG VAL SER PHE SER CYS ARG ALA SER SEQRES 3 A 213 GLN SER ILE GLY THR ASN ILE HIS TRP TYR GLN GLN ARG SEQRES 4 A 213 THR ASN GLY SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 A 213 GLU SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 A 213 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 A 213 GLU SER GLU ASP ILE ALA ASP TYR TYR CYS GLN GLN ASN SEQRES 8 A 213 ASN ASN TRP PRO THR THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 A 213 GLU LEU LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 A 213 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 A 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 A 213 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 A 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 A 213 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 A 213 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 A 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 A 213 PHE ASN ARG GLY ALA SEQRES 1 B 221 GLN VAL GLN LEU LYS GLN SER GLY PRO GLY LEU VAL GLN SEQRES 2 B 221 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 B 221 PHE SER LEU THR ASN TYR GLY VAL HIS TRP VAL ARG GLN SEQRES 4 B 221 SER PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 B 221 SER GLY GLY ASN THR ASP TYR ASN THR PRO PHE THR SER SEQRES 6 B 221 ARG LEU SER ILE ASN LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 B 221 PHE PHE LYS MET ASN SER LEU GLN SER ASN ASP THR ALA SEQRES 8 B 221 ILE TYR TYR CYS ALA ARG ALA LEU THR TYR TYR ASP TYR SEQRES 9 B 221 GLU PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 B 221 SER ALA ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 B 221 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 B 221 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 B 221 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 B 221 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 B 221 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 B 221 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 B 221 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 1 C 213 ASP ILE LEU LEU THR GLN SER PRO VAL ILE LEU SER VAL SEQRES 2 C 213 SER PRO GLY GLU ARG VAL SER PHE SER CYS ARG ALA SER SEQRES 3 C 213 GLN SER ILE GLY THR ASN ILE HIS TRP TYR GLN GLN ARG SEQRES 4 C 213 THR ASN GLY SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 C 213 GLU SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 C 213 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 C 213 GLU SER GLU ASP ILE ALA ASP TYR TYR CYS GLN GLN ASN SEQRES 8 C 213 ASN ASN TRP PRO THR THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 C 213 GLU LEU LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 C 213 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 C 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 C 213 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 C 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 C 213 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 C 213 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 C 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 C 213 PHE ASN ARG GLY ALA SEQRES 1 D 221 GLN VAL GLN LEU LYS GLN SER GLY PRO GLY LEU VAL GLN SEQRES 2 D 221 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 D 221 PHE SER LEU THR ASN TYR GLY VAL HIS TRP VAL ARG GLN SEQRES 4 D 221 SER PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 D 221 SER GLY GLY ASN THR ASP TYR ASN THR PRO PHE THR SER SEQRES 6 D 221 ARG LEU SER ILE ASN LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 D 221 PHE PHE LYS MET ASN SER LEU GLN SER ASN ASP THR ALA SEQRES 8 D 221 ILE TYR TYR CYS ALA ARG ALA LEU THR TYR TYR ASP TYR SEQRES 9 D 221 GLU PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 D 221 SER ALA ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 D 221 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 D 221 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 D 221 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 D 221 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 D 221 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 D 221 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 D 221 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 1 E 12 GLY GLN PHE ASP LEU SER THR CIR ARG LEU LYS GLY SEQRES 1 F 12 GLY GLN PHE ASP LEU SER THR CIR ARG LEU LYS GLY HET CIR E 8 11 HET CIR F 8 11 HET PO4 A 301 5 HET PO4 B 301 5 HET PO4 C 301 5 HET PO4 C 302 5 HETNAM CIR CITRULLINE HETNAM PO4 PHOSPHATE ION FORMUL 5 CIR 2(C6 H13 N3 O3) FORMUL 7 PO4 4(O4 P 3-) FORMUL 11 HOH *537(H2 O) HELIX 1 AA1 GLU A 79 ILE A 83 5 5 HELIX 2 AA2 SER A 121 LYS A 126 1 6 HELIX 3 AA3 LYS A 183 LYS A 188 1 6 HELIX 4 AA4 THR B 61 THR B 64 5 4 HELIX 5 AA5 GLN B 86 THR B 90 5 5 HELIX 6 AA6 SER B 162 ALA B 164 5 3 HELIX 7 AA7 SER B 193 LEU B 195 5 3 HELIX 8 AA8 LYS B 207 ASN B 210 5 4 HELIX 9 AA9 GLU C 79 ILE C 83 5 5 HELIX 10 AB1 SER C 121 LYS C 126 1 6 HELIX 11 AB2 LYS C 183 LYS C 188 1 6 HELIX 12 AB3 THR D 61 THR D 64 5 4 HELIX 13 AB4 GLN D 86 THR D 90 5 5 HELIX 14 AB5 SER D 162 ALA D 164 5 3 HELIX 15 AB6 SER D 193 LEU D 195 5 3 HELIX 16 AB7 LYS D 207 ASN D 210 5 4 SHEET 1 AA1 4 LEU A 4 SER A 7 0 SHEET 2 AA1 4 VAL A 19 ALA A 25 -1 O ARG A 24 N THR A 5 SHEET 3 AA1 4 ASP A 70 ILE A 75 -1 O LEU A 73 N PHE A 21 SHEET 4 AA1 4 PHE A 62 SER A 67 -1 N SER A 63 O SER A 74 SHEET 1 AA2 5 ILE A 10 VAL A 13 0 SHEET 2 AA2 5 THR A 102 LEU A 106 1 O GLU A 105 N LEU A 11 SHEET 3 AA2 5 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 104 SHEET 4 AA2 5 ILE A 33 GLN A 38 -1 N HIS A 34 O GLN A 89 SHEET 5 AA2 5 ARG A 45 ILE A 48 -1 O ARG A 45 N GLN A 37 SHEET 1 AA3 4 ILE A 10 VAL A 13 0 SHEET 2 AA3 4 THR A 102 LEU A 106 1 O GLU A 105 N LEU A 11 SHEET 3 AA3 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 104 SHEET 4 AA3 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AA4 4 SER A 114 PHE A 118 0 SHEET 2 AA4 4 THR A 129 PHE A 139 -1 O LEU A 135 N PHE A 116 SHEET 3 AA4 4 TYR A 173 SER A 182 -1 O SER A 177 N CYS A 134 SHEET 4 AA4 4 SER A 159 VAL A 163 -1 N GLN A 160 O THR A 178 SHEET 1 AA5 4 ALA A 153 LEU A 154 0 SHEET 2 AA5 4 LYS A 145 VAL A 150 -1 N VAL A 150 O ALA A 153 SHEET 3 AA5 4 VAL A 191 THR A 197 -1 O GLU A 195 N GLN A 147 SHEET 4 AA5 4 VAL A 205 ASN A 210 -1 O VAL A 205 N VAL A 196 SHEET 1 AA6 4 GLN B 3 GLN B 6 0 SHEET 2 AA6 4 LEU B 18 SER B 25 -1 O THR B 23 N LYS B 5 SHEET 3 AA6 4 GLN B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 AA6 4 LEU B 67 ASP B 72 -1 N ASN B 70 O PHE B 79 SHEET 1 AA7 6 GLY B 10 VAL B 12 0 SHEET 2 AA7 6 THR B 113 VAL B 117 1 O THR B 116 N VAL B 12 SHEET 3 AA7 6 ALA B 91 ALA B 98 -1 N ALA B 91 O VAL B 115 SHEET 4 AA7 6 VAL B 34 SER B 40 -1 N VAL B 37 O TYR B 94 SHEET 5 AA7 6 GLY B 44 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA7 6 THR B 57 TYR B 59 -1 O ASP B 58 N VAL B 50 SHEET 1 AA8 4 GLY B 10 VAL B 12 0 SHEET 2 AA8 4 THR B 113 VAL B 117 1 O THR B 116 N VAL B 12 SHEET 3 AA8 4 ALA B 91 ALA B 98 -1 N ALA B 91 O VAL B 115 SHEET 4 AA8 4 PHE B 106 TRP B 109 -1 O TYR B 108 N ARG B 97 SHEET 1 AA9 4 SER B 126 LEU B 130 0 SHEET 2 AA9 4 THR B 141 TYR B 151 -1 O LEU B 147 N PHE B 128 SHEET 3 AA9 4 TYR B 182 PRO B 191 -1 O TYR B 182 N TYR B 151 SHEET 4 AA9 4 VAL B 169 THR B 171 -1 N HIS B 170 O VAL B 187 SHEET 1 AB1 4 SER B 126 LEU B 130 0 SHEET 2 AB1 4 THR B 141 TYR B 151 -1 O LEU B 147 N PHE B 128 SHEET 3 AB1 4 TYR B 182 PRO B 191 -1 O TYR B 182 N TYR B 151 SHEET 4 AB1 4 VAL B 175 LEU B 176 -1 N VAL B 175 O SER B 183 SHEET 1 AB2 3 THR B 157 TRP B 160 0 SHEET 2 AB2 3 ILE B 201 HIS B 206 -1 O ASN B 203 N SER B 159 SHEET 3 AB2 3 THR B 211 ARG B 216 -1 O THR B 211 N HIS B 206 SHEET 1 AB3 4 LEU C 4 SER C 7 0 SHEET 2 AB3 4 VAL C 19 ALA C 25 -1 O ARG C 24 N THR C 5 SHEET 3 AB3 4 ASP C 70 ILE C 75 -1 O LEU C 73 N PHE C 21 SHEET 4 AB3 4 PHE C 62 SER C 67 -1 N SER C 63 O SER C 74 SHEET 1 AB4 6 ILE C 10 VAL C 13 0 SHEET 2 AB4 6 THR C 102 LEU C 106 1 O LYS C 103 N LEU C 11 SHEET 3 AB4 6 ALA C 84 GLN C 90 -1 N TYR C 86 O THR C 102 SHEET 4 AB4 6 ILE C 33 GLN C 38 -1 N TYR C 36 O TYR C 87 SHEET 5 AB4 6 ARG C 45 LYS C 49 -1 O ARG C 45 N GLN C 37 SHEET 6 AB4 6 GLU C 53 SER C 54 -1 O GLU C 53 N LYS C 49 SHEET 1 AB5 4 ILE C 10 VAL C 13 0 SHEET 2 AB5 4 THR C 102 LEU C 106 1 O LYS C 103 N LEU C 11 SHEET 3 AB5 4 ALA C 84 GLN C 90 -1 N TYR C 86 O THR C 102 SHEET 4 AB5 4 THR C 97 PHE C 98 -1 O THR C 97 N GLN C 90 SHEET 1 AB6 4 SER C 114 PHE C 118 0 SHEET 2 AB6 4 THR C 129 PHE C 139 -1 O LEU C 135 N PHE C 116 SHEET 3 AB6 4 TYR C 173 SER C 182 -1 O LEU C 179 N VAL C 132 SHEET 4 AB6 4 SER C 159 VAL C 163 -1 N GLN C 160 O THR C 178 SHEET 1 AB7 4 ALA C 153 LEU C 154 0 SHEET 2 AB7 4 ALA C 144 VAL C 150 -1 N VAL C 150 O ALA C 153 SHEET 3 AB7 4 VAL C 191 HIS C 198 -1 O GLU C 195 N GLN C 147 SHEET 4 AB7 4 VAL C 205 ASN C 210 -1 O LYS C 207 N CYS C 194 SHEET 1 AB8 4 GLN D 3 GLN D 6 0 SHEET 2 AB8 4 LEU D 18 SER D 25 -1 O THR D 23 N LYS D 5 SHEET 3 AB8 4 GLN D 77 MET D 82 -1 O VAL D 78 N CYS D 22 SHEET 4 AB8 4 LEU D 67 ASP D 72 -1 N ASN D 70 O PHE D 79 SHEET 1 AB9 6 GLY D 10 VAL D 12 0 SHEET 2 AB9 6 THR D 113 VAL D 117 1 O THR D 116 N VAL D 12 SHEET 3 AB9 6 ALA D 91 ALA D 98 -1 N ALA D 91 O VAL D 115 SHEET 4 AB9 6 VAL D 34 SER D 40 -1 N VAL D 37 O TYR D 94 SHEET 5 AB9 6 GLY D 44 ILE D 51 -1 O LEU D 48 N TRP D 36 SHEET 6 AB9 6 THR D 57 TYR D 59 -1 O ASP D 58 N VAL D 50 SHEET 1 AC1 4 GLY D 10 VAL D 12 0 SHEET 2 AC1 4 THR D 113 VAL D 117 1 O THR D 116 N VAL D 12 SHEET 3 AC1 4 ALA D 91 ALA D 98 -1 N ALA D 91 O VAL D 115 SHEET 4 AC1 4 PHE D 106 TRP D 109 -1 O TYR D 108 N ARG D 97 SHEET 1 AC2 4 SER D 126 LEU D 130 0 SHEET 2 AC2 4 THR D 141 TYR D 151 -1 O GLY D 145 N LEU D 130 SHEET 3 AC2 4 TYR D 182 PRO D 191 -1 O LEU D 184 N VAL D 148 SHEET 4 AC2 4 VAL D 169 THR D 171 -1 N HIS D 170 O VAL D 187 SHEET 1 AC3 4 SER D 126 LEU D 130 0 SHEET 2 AC3 4 THR D 141 TYR D 151 -1 O GLY D 145 N LEU D 130 SHEET 3 AC3 4 TYR D 182 PRO D 191 -1 O LEU D 184 N VAL D 148 SHEET 4 AC3 4 VAL D 175 LEU D 176 -1 N VAL D 175 O SER D 183 SHEET 1 AC4 3 THR D 157 TRP D 160 0 SHEET 2 AC4 3 ILE D 201 HIS D 206 -1 O ASN D 203 N SER D 159 SHEET 3 AC4 3 THR D 211 ARG D 216 -1 O VAL D 213 N VAL D 204 SHEET 1 AC5 2 GLN E 2 PHE E 3 0 SHEET 2 AC5 2 LEU E 10 LYS E 11 -1 O LYS E 11 N GLN E 2 SHEET 1 AC6 2 GLN F 2 PHE F 3 0 SHEET 2 AC6 2 LEU F 10 LYS F 11 -1 O LYS F 11 N GLN F 2 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.06 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.02 SSBOND 3 CYS B 22 CYS B 95 1555 1555 2.07 SSBOND 4 CYS B 146 CYS B 202 1555 1555 2.03 SSBOND 5 CYS C 23 CYS C 88 1555 1555 2.07 SSBOND 6 CYS C 134 CYS C 194 1555 1555 2.03 SSBOND 7 CYS D 22 CYS D 95 1555 1555 2.08 SSBOND 8 CYS D 146 CYS D 202 1555 1555 2.03 LINK N GLY E 1 C GLY E 12 1555 1555 1.33 LINK C THR E 7 N CIR E 8 1555 1555 1.33 LINK C CIR E 8 N ARG E 9 1555 1555 1.33 LINK N GLY F 1 C GLY F 12 1555 1555 1.33 LINK C THR F 7 N CIR F 8 1555 1555 1.33 LINK C CIR F 8 N ARG F 9 1555 1555 1.33 CISPEP 1 SER A 7 PRO A 8 0 -7.83 CISPEP 2 TRP A 94 PRO A 95 0 1.58 CISPEP 3 TYR A 140 PRO A 141 0 4.85 CISPEP 4 PHE B 152 PRO B 153 0 -8.06 CISPEP 5 GLU B 154 PRO B 155 0 -0.18 CISPEP 6 SER C 7 PRO C 8 0 -0.47 CISPEP 7 TRP C 94 PRO C 95 0 -4.51 CISPEP 8 TYR C 140 PRO C 141 0 2.88 CISPEP 9 PHE D 152 PRO D 153 0 -2.56 CISPEP 10 GLU D 154 PRO D 155 0 -0.28 SITE 1 AC1 6 ARG A 39 ARG A 45 PRO A 59 ARG A 61 SITE 2 AC1 6 HOH A 409 HOH A 418 SITE 1 AC2 8 GLU A 165 ASP A 167 HOH A 451 VAL B 169 SITE 2 AC2 8 HIS B 170 HOH B 410 HOH B 417 HOH B 477 SITE 1 AC3 5 ARG C 39 ARG C 45 PRO C 59 HOH C 404 SITE 2 AC3 5 HOH C 417 SITE 1 AC4 7 GLU C 165 ASP C 167 HOH C 420 HOH C 423 SITE 2 AC4 7 HOH C 425 VAL D 169 HIS D 170 CRYST1 64.340 82.570 212.050 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015542 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004716 0.00000