HEADER CELL ADHESION 23-MAR-16 5IXB TITLE STRUCTURE OF HUMAN MELANOMA INHIBITORY ACTIVITY (MIA) PROTEIN IN TITLE 2 COMPLEX WITH PYRIMIDIN-2-AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MELANOMA-DERIVED GROWTH REGULATORY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 25-131; COMPND 5 SYNONYM: MELANOMA INHIBITORY ACTIVITY PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE-40 KEYWDS ALL BETA, SH3 DOMAIN-LIKE FOLD, EXTRACELLULAR, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.T.YIP,R.GASPER,X.Y.ZHONG,N.SEIBEL,S.PUETZ,J.AUTZEN,J.SCHERKENBECK, AUTHOR 2 E.HOFMANN,R.STOLL REVDAT 2 10-JAN-24 5IXB 1 REMARK REVDAT 1 17-AUG-16 5IXB 0 JRNL AUTH K.T.YIP,X.Y.ZHONG,N.SEIBEL,S.PUTZ,J.AUTZEN,R.GASPER, JRNL AUTH 2 E.HOFMANN,J.SCHERKENBECK,R.STOLL JRNL TITL SMALL MOLECULES ANTAGONISE THE MIA-FIBRONECTIN INTERACTION JRNL TITL 2 IN MALIGNANT MELANOMA. JRNL REF SCI REP V. 6 25119 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27151361 JRNL DOI 10.1038/SREP25119 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10-2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7667 - 3.3495 1.00 2943 155 0.1527 0.1564 REMARK 3 2 3.3495 - 2.6587 1.00 2812 148 0.1479 0.1702 REMARK 3 3 2.6587 - 2.3227 1.00 2775 147 0.1372 0.1697 REMARK 3 4 2.3227 - 2.1103 1.00 2759 145 0.1190 0.1315 REMARK 3 5 2.1103 - 1.9591 1.00 2748 144 0.1165 0.1575 REMARK 3 6 1.9591 - 1.8436 1.00 2739 144 0.1183 0.1580 REMARK 3 7 1.8436 - 1.7512 1.00 2721 144 0.1102 0.1519 REMARK 3 8 1.7512 - 1.6750 1.00 2732 143 0.1127 0.1669 REMARK 3 9 1.6750 - 1.6105 1.00 2744 145 0.1051 0.1700 REMARK 3 10 1.6105 - 1.5549 1.00 2706 142 0.1063 0.1659 REMARK 3 11 1.5549 - 1.5063 1.00 2718 143 0.1104 0.1738 REMARK 3 12 1.5063 - 1.4632 1.00 2702 143 0.1082 0.1616 REMARK 3 13 1.4632 - 1.4247 0.99 2690 141 0.1191 0.1821 REMARK 3 14 1.4247 - 1.3900 0.96 2565 135 0.1353 0.1746 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1860 REMARK 3 ANGLE : 1.105 2516 REMARK 3 CHIRALITY : 0.091 250 REMARK 3 PLANARITY : 0.008 332 REMARK 3 DIHEDRAL : 14.265 718 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND ((RESID 3 AND (NAME O OR REMARK 3 NAME N OR NAME CA OR NAME C OR NAME CB OR REMARK 3 NAME CG OR NAME SD OR NAME CE OR NAME H REMARK 3 OR NAME HB2 OR NAME HB3 OR NAME HG2 OR REMARK 3 NAME HG3 OR NAME HE1 OR NAME HE2 OR NAME REMARK 3 HE3)) OR RESSEQ 4:7 OR RESSEQ 10:31 OR REMARK 3 RESSEQ 33:52 OR RESSEQ 56:67 OR (RESID 68 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME HA OR NAME CB OR NAME CG OR REMARK 3 NAME CD1 OR NAME CE1 OR NAME CZ OR NAME REMARK 3 OH OR NAME HB2 OR NAME HB3 OR NAME HD1 OR REMARK 3 NAME HD2 OR NAME HE1 OR NAME HE2 OR NAME REMARK 3 HH )) OR RESSEQ 70:74 OR RESSEQ 76:81 OR REMARK 3 RESSEQ 84:87 OR RESSEQ 89:95 OR (RESID 96 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 CG OR NAME OD1 OR NAME OD2 OR NAME HB2 OR REMARK 3 NAME HB3)) OR (RESID 97 AND (NAME N OR REMARK 3 NAME CA OR NAME CB OR NAME CG1 OR NAME REMARK 3 CG2 OR NAME HB OR NAME HG11 OR NAME HG12 REMARK 3 OR NAME HG13 OR NAME HG21 OR NAME HG22 OR REMARK 3 NAME HG23)) OR (RESID 98 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME H OR NAME HA OR REMARK 3 NAME CB OR NAME CG OR NAME CD OR NAME CE REMARK 3 OR NAME NZ OR NAME HB2 OR NAME HB3 OR REMARK 3 NAME HG2 OR NAME HG3 OR NAME HD2 OR NAME REMARK 3 HD3 OR NAME HE2 OR NAME HE3 OR NAME HZ1 REMARK 3 OR NAME HZ2 OR NAME HZ3)) OR RESSEQ 99: REMARK 3 104 OR (RESID 105 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME CG OR NAME CD1 OR NAME REMARK 3 CE1 OR NAME CZ OR NAME OH OR NAME HB2 OR REMARK 3 NAME HB3 OR NAME HD1 OR NAME HD2 OR NAME REMARK 3 HE1 OR NAME HE2 OR NAME HH )) OR RESSEQ REMARK 3 107)) REMARK 3 SELECTION : (CHAIN B AND ((RESID 3 AND (NAME O OR REMARK 3 NAME N OR NAME CA OR NAME C OR NAME CB OR REMARK 3 NAME CG OR NAME SD OR NAME CE OR NAME H REMARK 3 OR NAME HB2 OR NAME HB3 OR NAME HG2 OR REMARK 3 NAME HG3 OR NAME HE1 OR NAME HE2 OR NAME REMARK 3 HE3)) OR RESSEQ 4:7 OR RESSEQ 10:31 OR REMARK 3 RESSEQ 33:52 OR RESSEQ 56:67 OR (RESID 68 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME HA OR NAME CB OR NAME CG OR REMARK 3 NAME CD1 OR NAME CE1 OR NAME CZ OR NAME REMARK 3 OH OR NAME HB2 OR NAME HB3 OR NAME HD1 OR REMARK 3 NAME HD2 OR NAME HE1 OR NAME HE2 OR NAME REMARK 3 HH )) OR RESSEQ 70:74 OR RESSEQ 76:81 OR REMARK 3 RESSEQ 84:87 OR RESSEQ 89:95 OR (RESID 96 REMARK 3 AND (NAME O OR NAME N OR NAME HA OR NAME REMARK 3 CB OR NAME CG OR NAME OD1 OR NAME OD2 OR REMARK 3 NAME HB2)) OR (RESID 97 AND (NAME O OR REMARK 3 NAME N OR NAME HA OR NAME CB OR NAME CG1 REMARK 3 OR NAME CG2 OR NAME HB OR NAME HG11 OR REMARK 3 NAME HG12 OR NAME HG13 OR NAME HG21 OR REMARK 3 NAME HG22)) OR (RESID 98 AND (NAME O OR REMARK 3 NAME N OR NAME CA OR NAME C OR NAME H OR REMARK 3 NAME HA OR NAME CB OR NAME CG OR NAME CD REMARK 3 OR NAME CE OR NAME NZ OR NAME HB2 OR NAME REMARK 3 HB3 OR NAME HG2 OR NAME HG3 OR NAME HD2 REMARK 3 OR NAME HD3 OR NAME HE2 OR NAME HE3 OR REMARK 3 NAME HZ1 OR NAME HZ2)) OR RESSEQ 99:104 REMARK 3 OR (RESID 105 AND (NAME N OR NAME CA OR REMARK 3 NAME CB OR NAME CG OR NAME CD1 OR NAME REMARK 3 CE1 OR NAME CZ OR NAME OH OR NAME HB2 OR REMARK 3 NAME HB3 OR NAME HD1 OR NAME HD2 OR NAME REMARK 3 HE1 OR NAME HE2 OR NAME HH )) OR RESSEQ REMARK 3 107)) REMARK 3 ATOM PAIRS NUMBER : 1438 REMARK 3 RMSD : 0.236 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219592. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97962 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION JULY 4, 2012 REMARK 200 BUILT=20130617 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40375 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP VERS 11.2.05; 31.07.2013 REMARK 200 STARTING MODEL: 1I1J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS/HCL, PH 8.2, 20% MPD, 8% REMARK 280 PEG 8000, PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.72000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.74500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.74500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.72000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 307 O HOH A 390 2.04 REMARK 500 O HOH B 365 O HOH B 395 2.07 REMARK 500 O HOH B 353 O HOH B 373 2.09 REMARK 500 O HOH A 305 O HOH A 374 2.09 REMARK 500 OXT ACT B 202 O HOH B 301 2.09 REMARK 500 O ACT A 202 O HOH A 301 2.11 REMARK 500 O HOH A 367 O HOH A 376 2.13 REMARK 500 O HOH B 307 O HOH B 386 2.14 REMARK 500 O HOH B 305 O HOH B 372 2.14 REMARK 500 O HOH B 400 O HOH B 414 2.17 REMARK 500 O HOH A 403 O HOH A 418 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 403 O HOH B 418 4446 2.16 REMARK 500 O HOH A 405 O HOH A 420 3545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 53 -156.62 -108.97 REMARK 500 LYS B 53 -142.87 -116.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 433 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 434 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A 435 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH B 429 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 430 DISTANCE = 6.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LGA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LGA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 202 DBREF 5IXB A 1 107 UNP Q16674 MIA_HUMAN 25 131 DBREF 5IXB B 1 107 UNP Q16674 MIA_HUMAN 25 131 SEQADV 5IXB MET A 0 UNP Q16674 INITIATING METHIONINE SEQADV 5IXB MET B 0 UNP Q16674 INITIATING METHIONINE SEQRES 1 A 108 MET GLY PRO MET PRO LYS LEU ALA ASP ARG LYS LEU CYS SEQRES 2 A 108 ALA ASP GLN GLU CYS SER HIS PRO ILE SER MET ALA VAL SEQRES 3 A 108 ALA LEU GLN ASP TYR MET ALA PRO ASP CYS ARG PHE LEU SEQRES 4 A 108 THR ILE HIS ARG GLY GLN VAL VAL TYR VAL PHE SER LYS SEQRES 5 A 108 LEU LYS GLY ARG GLY ARG LEU PHE TRP GLY GLY SER VAL SEQRES 6 A 108 GLN GLY ASP TYR TYR GLY ASP LEU ALA ALA ARG LEU GLY SEQRES 7 A 108 TYR PHE PRO SER SER ILE VAL ARG GLU ASP GLN THR LEU SEQRES 8 A 108 LYS PRO GLY LYS VAL ASP VAL LYS THR ASP LYS TRP ASP SEQRES 9 A 108 PHE TYR CYS GLN SEQRES 1 B 108 MET GLY PRO MET PRO LYS LEU ALA ASP ARG LYS LEU CYS SEQRES 2 B 108 ALA ASP GLN GLU CYS SER HIS PRO ILE SER MET ALA VAL SEQRES 3 B 108 ALA LEU GLN ASP TYR MET ALA PRO ASP CYS ARG PHE LEU SEQRES 4 B 108 THR ILE HIS ARG GLY GLN VAL VAL TYR VAL PHE SER LYS SEQRES 5 B 108 LEU LYS GLY ARG GLY ARG LEU PHE TRP GLY GLY SER VAL SEQRES 6 B 108 GLN GLY ASP TYR TYR GLY ASP LEU ALA ALA ARG LEU GLY SEQRES 7 B 108 TYR PHE PRO SER SER ILE VAL ARG GLU ASP GLN THR LEU SEQRES 8 B 108 LYS PRO GLY LYS VAL ASP VAL LYS THR ASP LYS TRP ASP SEQRES 9 B 108 PHE TYR CYS GLN HET LGA A 201 12 HET ACT A 202 7 HET LGA B 201 12 HET ACT B 202 7 HETNAM LGA PYRIMIDIN-2-AMINE HETNAM ACT ACETATE ION FORMUL 3 LGA 2(C4 H5 N3) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 7 HOH *265(H2 O) HELIX 1 AA1 GLY A 54 ARG A 57 5 4 HELIX 2 AA2 ASP A 100 TYR A 105 5 6 HELIX 3 AA3 GLY B 54 ARG B 57 5 4 HELIX 4 AA4 ASP B 100 TYR B 105 5 6 SHEET 1 AA1 5 GLY A 77 PRO A 80 0 SHEET 2 AA1 5 PHE A 59 VAL A 64 -1 N TRP A 60 O PHE A 79 SHEET 3 AA1 5 VAL A 45 LEU A 52 -1 N SER A 50 O GLY A 61 SHEET 4 AA1 5 SER A 22 ALA A 26 -1 N ALA A 24 O VAL A 46 SHEET 5 AA1 5 VAL A 84 THR A 89 -1 O ASP A 87 N MET A 23 SHEET 1 AA2 5 GLY A 77 PRO A 80 0 SHEET 2 AA2 5 PHE A 59 VAL A 64 -1 N TRP A 60 O PHE A 79 SHEET 3 AA2 5 VAL A 45 LEU A 52 -1 N SER A 50 O GLY A 61 SHEET 4 AA2 5 ARG A 9 CYS A 12 -1 N LEU A 11 O LYS A 51 SHEET 5 AA2 5 VAL A 95 LYS A 98 -1 O VAL A 97 N LYS A 10 SHEET 1 AA3 5 GLY B 77 PRO B 80 0 SHEET 2 AA3 5 PHE B 59 VAL B 64 -1 N TRP B 60 O PHE B 79 SHEET 3 AA3 5 VAL B 45 LEU B 52 -1 N SER B 50 O GLY B 61 SHEET 4 AA3 5 SER B 22 ALA B 26 -1 N ALA B 24 O VAL B 46 SHEET 5 AA3 5 VAL B 84 THR B 89 -1 O ASP B 87 N MET B 23 SHEET 1 AA4 5 GLY B 77 PRO B 80 0 SHEET 2 AA4 5 PHE B 59 VAL B 64 -1 N TRP B 60 O PHE B 79 SHEET 3 AA4 5 VAL B 45 LEU B 52 -1 N SER B 50 O GLY B 61 SHEET 4 AA4 5 ARG B 9 CYS B 12 -1 N LEU B 11 O LYS B 51 SHEET 5 AA4 5 VAL B 95 LYS B 98 -1 O VAL B 97 N LYS B 10 SSBOND 1 CYS A 12 CYS A 17 1555 1555 2.02 SSBOND 2 CYS A 35 CYS A 106 1555 1555 2.00 SSBOND 3 CYS B 12 CYS B 17 1555 1555 2.02 SSBOND 4 CYS B 35 CYS B 106 1555 1555 2.00 SITE 1 AC1 9 LEU A 76 GLY A 77 TYR A 78 TRP A 102 SITE 2 AC1 9 ASP A 103 TYR A 105 GLN A 107 HOH A 327 SITE 3 AC1 9 HOH A 336 SITE 1 AC2 4 LYS A 5 ASP A 8 ARG A 55 HOH A 301 SITE 1 AC3 9 LEU B 76 GLY B 77 TYR B 78 TRP B 102 SITE 2 AC3 9 ASP B 103 TYR B 105 GLN B 107 HOH B 319 SITE 3 AC3 9 HOH B 337 SITE 1 AC4 5 LYS B 5 LEU B 6 ASP B 8 ARG B 55 SITE 2 AC4 5 HOH B 301 CRYST1 47.440 47.480 87.490 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021079 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021061 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011430 0.00000 MTRIX1 1 0.000825 0.999995 0.003006 11.73720 1 MTRIX2 1 0.999999 -0.000827 0.000635 -11.85660 1 MTRIX3 1 0.000638 0.003005 -0.999995 65.67270 1