HEADER IMMUNE SYSTEM 23-MAR-16 5IXK TITLE RORGAMMA IN COMPLEX WITH INVERSE AGONIST BIO399. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR ROR-GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN UNP RESIDUE 268-487; COMPND 5 SYNONYM: NUCLEAR RECEPTOR RZR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 COMPND 6 GROUP F MEMBER 3,RAR-RELATED ORPHAN RECEPTOR C,RETINOID-RELATED COMPND 7 ORPHAN RECEPTOR-GAMMA; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RORC, NR1F3, RORG, RZRG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RORGAMMA, NUCLEAR HORMONE RECEPTOR, INVERSE AGONIST, AF2 HELIX, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.J.MARCOTTE REVDAT 3 27-SEP-23 5IXK 1 REMARK REVDAT 2 01-NOV-17 5IXK 1 REMARK REVDAT 1 15-JUN-16 5IXK 0 JRNL AUTH D.J.MARCOTTE,Y.LIU,K.LITTLE,J.H.JONES,N.A.POWELL,C.P.WILDES, JRNL AUTH 2 L.F.SILVIAN,J.V.CHODAPARAMBIL JRNL TITL STRUCTURAL DETERMINANT FOR INDUCING RORGAMMA SPECIFIC JRNL TITL 2 INVERSE AGONISM TRIGGERED BY A SYNTHETIC BENZOXAZINONE JRNL TITL 3 LIGAND. JRNL REF BMC STRUCT.BIOL. V. 16 7 2016 JRNL REFN ESSN 1472-6807 JRNL PMID 27246200 JRNL DOI 10.1186/S12900-016-0059-3 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 17766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 970 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1316 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.51000 REMARK 3 B22 (A**2) : -5.25000 REMARK 3 B33 (A**2) : 3.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.515 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.284 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.241 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.843 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3616 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3393 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4904 ; 2.124 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7743 ; 1.468 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 6.182 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;34.899 ;23.690 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 613 ;16.979 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;23.340 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 546 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4106 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 888 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1761 ; 2.512 ; 1.899 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1760 ; 2.512 ; 1.898 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2200 ; 3.876 ; 2.836 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 269 A 487 REMARK 3 ORIGIN FOR THE GROUP (A): -16.5095 -0.1951 -15.8545 REMARK 3 T TENSOR REMARK 3 T11: 0.5167 T22: 0.5377 REMARK 3 T33: 0.0202 T12: -0.0016 REMARK 3 T13: 0.0825 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.3554 L22: 0.2211 REMARK 3 L33: 0.2187 L12: -0.0819 REMARK 3 L13: 0.4793 L23: -0.1294 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: -0.0581 S13: -0.0888 REMARK 3 S21: -0.0105 S22: -0.0005 S23: 0.0072 REMARK 3 S31: -0.0179 S32: -0.0137 S33: -0.0385 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 268 B 487 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3428 17.0847 -16.9412 REMARK 3 T TENSOR REMARK 3 T11: 0.5090 T22: 0.5097 REMARK 3 T33: 0.0212 T12: -0.0080 REMARK 3 T13: 0.0746 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.0349 L22: 0.7862 REMARK 3 L33: 0.0798 L12: 0.4413 REMARK 3 L13: -0.1856 L23: -0.2407 REMARK 3 S TENSOR REMARK 3 S11: 0.0313 S12: -0.0413 S13: -0.0980 REMARK 3 S21: -0.0127 S22: -0.0449 S23: -0.0499 REMARK 3 S31: -0.0345 S32: 0.0020 S33: 0.0136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5IXK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18850 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 64.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3LOL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BISTRIS PH 5.5 0.2M NH3 ACETATE REMARK 280 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.96950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.08350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.96950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.08350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER CONFIRMED BY SEC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 613 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 260 REMARK 465 PRO A 261 REMARK 465 THR A 262 REMARK 465 PRO A 263 REMARK 465 GLU A 264 REMARK 465 ALA A 265 REMARK 465 PRO A 266 REMARK 465 TYR A 267 REMARK 465 THR A 268 REMARK 465 GLY B 260 REMARK 465 PRO B 261 REMARK 465 THR B 262 REMARK 465 PRO B 263 REMARK 465 GLU B 264 REMARK 465 ALA B 265 REMARK 465 PRO B 266 REMARK 465 TYR B 267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 282 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 288 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 ARG A 294 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 LYS A 336 CG CD CE NZ REMARK 470 ARG A 374 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 437 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 440 CG CD OE1 OE2 REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 GLN A 478 CG CD OE1 NE2 REMARK 470 THR B 268 OG1 CG2 REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 GLN B 275 CG CD OE1 NE2 REMARK 470 ARG B 288 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 290 CG CD OE1 OE2 REMARK 470 ARG B 294 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 302 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 303 CG CD OE1 OE2 REMARK 470 ARG B 310 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 315 CG CD OE1 OE2 REMARK 470 LYS B 381 CG CD CE NZ REMARK 470 ARG B 389 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 395 CG CD OE1 OE2 REMARK 470 LYS B 436 CG CD CE NZ REMARK 470 ARG B 437 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 438 CG CD CE NZ REMARK 470 LYS B 469 CG CD CE NZ REMARK 470 LYS B 471 CG CD CE NZ REMARK 470 ARG B 473 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 474 OG SER A 477 1.89 REMARK 500 O HIS B 405 OG SER B 408 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE1 HIS A 322 NH1 ARG B 337 4444 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 414 CD GLU A 414 OE2 0.086 REMARK 500 SER B 339 C SER B 339 O 0.124 REMARK 500 GLU B 343 CD GLU B 343 OE2 -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 286 CB - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 PHE A 412 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 482 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 GLN B 286 CB - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 ASP B 291 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 MET B 365 CG - SD - CE ANGL. DEV. = -11.5 DEGREES REMARK 500 PRO B 468 C - N - CD ANGL. DEV. = -19.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 286 -13.01 65.30 REMARK 500 ASN A 373 12.38 -144.05 REMARK 500 GLU A 435 55.95 -93.77 REMARK 500 CYS A 476 38.96 -92.50 REMARK 500 SER A 477 -158.14 -88.90 REMARK 500 GLN B 286 2.27 50.13 REMARK 500 LEU B 287 100.98 -164.94 REMARK 500 CYS B 393 56.46 -154.15 REMARK 500 GLU B 435 59.84 -109.67 REMARK 500 SER B 477 -155.17 -134.34 REMARK 500 GLN B 478 -35.55 -37.66 REMARK 500 PHE B 486 34.52 -95.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6EW A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6EW B 501 DBREF 5IXK A 268 487 UNP P51449 RORG_HUMAN 268 487 DBREF 5IXK B 268 487 UNP P51449 RORG_HUMAN 268 487 SEQADV 5IXK GLY A 260 UNP P51449 EXPRESSION TAG SEQADV 5IXK PRO A 261 UNP P51449 EXPRESSION TAG SEQADV 5IXK THR A 262 UNP P51449 EXPRESSION TAG SEQADV 5IXK PRO A 263 UNP P51449 EXPRESSION TAG SEQADV 5IXK GLU A 264 UNP P51449 EXPRESSION TAG SEQADV 5IXK ALA A 265 UNP P51449 EXPRESSION TAG SEQADV 5IXK PRO A 266 UNP P51449 EXPRESSION TAG SEQADV 5IXK TYR A 267 UNP P51449 EXPRESSION TAG SEQADV 5IXK GLY B 260 UNP P51449 EXPRESSION TAG SEQADV 5IXK PRO B 261 UNP P51449 EXPRESSION TAG SEQADV 5IXK THR B 262 UNP P51449 EXPRESSION TAG SEQADV 5IXK PRO B 263 UNP P51449 EXPRESSION TAG SEQADV 5IXK GLU B 264 UNP P51449 EXPRESSION TAG SEQADV 5IXK ALA B 265 UNP P51449 EXPRESSION TAG SEQADV 5IXK PRO B 266 UNP P51449 EXPRESSION TAG SEQADV 5IXK TYR B 267 UNP P51449 EXPRESSION TAG SEQRES 1 A 228 GLY PRO THR PRO GLU ALA PRO TYR THR GLU ILE GLU HIS SEQRES 2 A 228 LEU VAL GLN SER VAL CYS LYS SER TYR ARG GLU THR CYS SEQRES 3 A 228 GLN LEU ARG LEU GLU ASP LEU LEU ARG GLN ARG SER ASN SEQRES 4 A 228 ILE PHE SER ARG GLU GLU VAL THR GLY TYR GLN ARG LYS SEQRES 5 A 228 SER MET TRP GLU MET TRP GLU ARG CYS ALA HIS HIS LEU SEQRES 6 A 228 THR GLU ALA ILE GLN TYR VAL VAL GLU PHE ALA LYS ARG SEQRES 7 A 228 LEU SER GLY PHE MET GLU LEU CYS GLN ASN ASP GLN ILE SEQRES 8 A 228 VAL LEU LEU LYS ALA GLY ALA MET GLU VAL VAL LEU VAL SEQRES 9 A 228 ARG MET CYS ARG ALA TYR ASN ALA ASP ASN ARG THR VAL SEQRES 10 A 228 PHE PHE GLU GLY LYS TYR GLY GLY MET GLU LEU PHE ARG SEQRES 11 A 228 ALA LEU GLY CYS SER GLU LEU ILE SER SER ILE PHE ASP SEQRES 12 A 228 PHE SER HIS SER LEU SER ALA LEU HIS PHE SER GLU ASP SEQRES 13 A 228 GLU ILE ALA LEU TYR THR ALA LEU VAL LEU ILE ASN ALA SEQRES 14 A 228 HIS ARG PRO GLY LEU GLN GLU LYS ARG LYS VAL GLU GLN SEQRES 15 A 228 LEU GLN TYR ASN LEU GLU LEU ALA PHE HIS HIS HIS LEU SEQRES 16 A 228 CYS LYS THR HIS ARG GLN SER ILE LEU ALA LYS LEU PRO SEQRES 17 A 228 PRO LYS GLY LYS LEU ARG SER LEU CYS SER GLN HIS VAL SEQRES 18 A 228 GLU ARG LEU GLN ILE PHE GLN SEQRES 1 B 228 GLY PRO THR PRO GLU ALA PRO TYR THR GLU ILE GLU HIS SEQRES 2 B 228 LEU VAL GLN SER VAL CYS LYS SER TYR ARG GLU THR CYS SEQRES 3 B 228 GLN LEU ARG LEU GLU ASP LEU LEU ARG GLN ARG SER ASN SEQRES 4 B 228 ILE PHE SER ARG GLU GLU VAL THR GLY TYR GLN ARG LYS SEQRES 5 B 228 SER MET TRP GLU MET TRP GLU ARG CYS ALA HIS HIS LEU SEQRES 6 B 228 THR GLU ALA ILE GLN TYR VAL VAL GLU PHE ALA LYS ARG SEQRES 7 B 228 LEU SER GLY PHE MET GLU LEU CYS GLN ASN ASP GLN ILE SEQRES 8 B 228 VAL LEU LEU LYS ALA GLY ALA MET GLU VAL VAL LEU VAL SEQRES 9 B 228 ARG MET CYS ARG ALA TYR ASN ALA ASP ASN ARG THR VAL SEQRES 10 B 228 PHE PHE GLU GLY LYS TYR GLY GLY MET GLU LEU PHE ARG SEQRES 11 B 228 ALA LEU GLY CYS SER GLU LEU ILE SER SER ILE PHE ASP SEQRES 12 B 228 PHE SER HIS SER LEU SER ALA LEU HIS PHE SER GLU ASP SEQRES 13 B 228 GLU ILE ALA LEU TYR THR ALA LEU VAL LEU ILE ASN ALA SEQRES 14 B 228 HIS ARG PRO GLY LEU GLN GLU LYS ARG LYS VAL GLU GLN SEQRES 15 B 228 LEU GLN TYR ASN LEU GLU LEU ALA PHE HIS HIS HIS LEU SEQRES 16 B 228 CYS LYS THR HIS ARG GLN SER ILE LEU ALA LYS LEU PRO SEQRES 17 B 228 PRO LYS GLY LYS LEU ARG SER LEU CYS SER GLN HIS VAL SEQRES 18 B 228 GLU ARG LEU GLN ILE PHE GLN HET 6EW A 501 33 HET 6EW B 501 33 HETNAM 6EW N-(5-ETHYL-3,3-DIMETHYL-4-OXO-2,3,4,5-TETRAHYDRO-1,5- HETNAM 2 6EW BENZOXAZEPIN-8-YL)-3,4-DIMETHYL-N-(2,2,2- HETNAM 3 6EW TRIFLUOROETHYL)BENZENE-1-SULFONAMIDE FORMUL 3 6EW 2(C23 H27 F3 N2 O4 S) FORMUL 5 HOH *39(H2 O) HELIX 1 AA1 GLU A 269 CYS A 285 1 17 HELIX 2 AA2 ARG A 288 GLN A 295 1 8 HELIX 3 AA3 ARG A 296 ASN A 298 5 3 HELIX 4 AA4 SER A 301 ARG A 310 1 10 HELIX 5 AA5 SER A 312 LEU A 338 1 27 HELIX 6 AA6 CYS A 345 MET A 365 1 21 HELIX 7 AA7 GLY A 384 GLY A 392 5 9 HELIX 8 AA8 CYS A 393 ALA A 409 1 17 HELIX 9 AA9 SER A 413 ILE A 426 1 14 HELIX 10 AB1 GLU A 435 THR A 457 1 23 HELIX 11 AB2 HIS A 458 ALA A 464 5 7 HELIX 12 AB3 PRO A 468 CYS A 476 1 9 HELIX 13 AB4 SER A 477 GLU A 481 5 5 HELIX 14 AB5 ARG A 482 GLN A 487 5 6 HELIX 15 AB6 GLU B 269 THR B 284 1 16 HELIX 16 AB7 ARG B 288 GLN B 295 1 8 HELIX 17 AB8 ARG B 296 ASN B 298 5 3 HELIX 18 AB9 SER B 301 ARG B 310 1 10 HELIX 19 AC1 SER B 312 LEU B 338 1 27 HELIX 20 AC2 GLY B 340 LEU B 344 5 5 HELIX 21 AC3 CYS B 345 CYS B 366 1 22 HELIX 22 AC4 GLY B 384 GLY B 392 5 9 HELIX 23 AC5 CYS B 393 ALA B 409 1 17 HELIX 24 AC6 SER B 413 ILE B 426 1 14 HELIX 25 AC7 GLU B 435 THR B 457 1 23 HELIX 26 AC8 SER B 461 LEU B 466 1 6 HELIX 27 AC9 PRO B 468 CYS B 476 1 9 HELIX 28 AD1 SER B 477 GLU B 481 5 5 HELIX 29 AD2 ARG B 482 GLN B 487 5 6 SHEET 1 AA1 3 TYR A 369 ASN A 370 0 SHEET 2 AA1 3 THR A 375 PHE A 378 -1 O THR A 375 N ASN A 370 SHEET 3 AA1 3 LYS A 381 GLY A 383 -1 O LYS A 381 N PHE A 378 SHEET 1 AA2 3 TYR B 369 ASN B 370 0 SHEET 2 AA2 3 THR B 375 PHE B 378 -1 O THR B 375 N ASN B 370 SHEET 3 AA2 3 LYS B 381 GLY B 383 -1 O LYS B 381 N PHE B 378 SITE 1 AC1 11 CYS A 320 HIS A 323 LEU A 324 ALA A 327 SITE 2 AC1 11 VAL A 361 MET A 365 PHE A 378 PHE A 388 SITE 3 AC1 11 PHE A 401 LEU A 475 VAL A 480 SITE 1 AC2 11 CYS B 320 HIS B 323 LEU B 324 ALA B 327 SITE 2 AC2 11 VAL B 361 MET B 365 PHE B 378 PHE B 388 SITE 3 AC2 11 ILE B 400 PHE B 401 VAL B 480 CRYST1 125.939 56.167 78.752 90.00 124.77 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007940 0.000000 0.005513 0.00000 SCALE2 0.000000 0.017804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015458 0.00000