data_5IYE
# 
_entry.id   5IYE 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.380 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   5IYE         pdb_00005iye 10.2210/pdb5iye/pdb 
WWPDB D_1000219623 ?            ?                   
# 
loop_
_pdbx_database_related.db_name 
_pdbx_database_related.details 
_pdbx_database_related.db_id 
_pdbx_database_related.content_type 
PDB . 5IYG unspecified 
PDB . 5IYJ unspecified 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.entry_id                        5IYE 
_pdbx_database_status.recvd_initial_deposition_date   2016-03-24 
_pdbx_database_status.SG_entry                        N 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    PDBJ 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
_audit_author.identifier_ORCID 
'Karthik, S.'             1 ? 
'Thirugnanasambandam, A.' 2 ? 
'Mandal, P.K.'            3 ? 
'Gautham, N.'             4 ? 
# 
_citation.abstract                  ? 
_citation.abstract_id_CAS           ? 
_citation.book_id_ISBN              ? 
_citation.book_publisher            ? 
_citation.book_publisher_city       ? 
_citation.book_title                ? 
_citation.coordinate_linkage        ? 
_citation.country                   US 
_citation.database_id_Medline       ? 
_citation.details                   ? 
_citation.id                        primary 
_citation.journal_abbrev            'Nucleosides Nucleotides Nucleic Acids' 
_citation.journal_id_ASTM           ? 
_citation.journal_id_CSD            ? 
_citation.journal_id_ISSN           1532-2335 
_citation.journal_full              ? 
_citation.journal_issue             ? 
_citation.journal_volume            36 
_citation.language                  ? 
_citation.page_first                343 
_citation.page_last                 354 
_citation.title                     
'Comparison of X-ray crystal structures of a tetradecamer sequence d(CCCGGGTACCCGGG)2 at 1.7 angstrom resolution.' 
_citation.year                      2017 
_citation.database_id_CSD           ? 
_citation.pdbx_database_id_DOI      10.1080/15257770.2017.1287378 
_citation.pdbx_database_id_PubMed   28387634 
_citation.unpublished_flag          ? 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Karthik, S.'             1 ? 
primary 'Thirugnanasambandam, A.' 2 ? 
primary 'Mandal, P.K.'            3 ? 
primary 'Gautham, N.'             4 ? 
# 
_cell.length_a           29.283 
_cell.length_b           29.283 
_cell.length_c           88.213 
_cell.angle_alpha        90.000 
_cell.angle_beta         90.000 
_cell.angle_gamma        90.000 
_cell.entry_id           5IYE 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.space_group_name_H-M             'P 41' 
_symmetry.entry_id                         5IYE 
_symmetry.Int_Tables_number                76 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*CP*CP*CP*GP*GP*GP*TP*AP*CP*CP*CP*GP*GP*G)-3')
;
4282.768 2  ? ? ? ? 
2 non-polymer syn 'ZINC ION'                                                 65.409   2  ? ? ? ? 
3 water       nat water                                                      18.015   46 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DC)(DC)(DG)(DG)(DG)(DT)(DA)(DC)(DC)(DC)(DG)(DG)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CCCGGGTACCCGGG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DC n 
1 3  DC n 
1 4  DG n 
1 5  DG n 
1 6  DG n 
1 7  DT n 
1 8  DA n 
1 9  DC n 
1 10 DC n 
1 11 DC n 
1 12 DG n 
1 13 DG n 
1 14 DG n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       1 
_pdbx_entity_src_syn.pdbx_end_seq_num       14 
_pdbx_entity_src_syn.organism_scientific    'synthetic construct' 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       32630 
_pdbx_entity_src_syn.details                ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    5IYE 
_struct_ref.pdbx_db_accession          5IYE 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           1 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 5IYE A 1 ? 14 ? 5IYE 1 ? 14 ? 1 14 
2 1 5IYE B 1 ? 14 ? 5IYE 1 ? 14 ? 1 14 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                ? 'H2 O'            18.015  
ZN  non-polymer   . 'ZINC ION'                           ? 'Zn 2'            65.409  
# 
_exptl.absorpt_coefficient_mu     ? 
_exptl.absorpt_correction_T_max   ? 
_exptl.absorpt_correction_T_min   ? 
_exptl.absorpt_correction_type    ? 
_exptl.absorpt_process_details    ? 
_exptl.entry_id                   5IYE 
_exptl.crystals_number            1 
_exptl.details                    ? 
_exptl.method                     'X-RAY DIFFRACTION' 
_exptl.method_details             ? 
# 
_exptl_crystal.colour                      ? 
_exptl_crystal.density_diffrn              ? 
_exptl_crystal.density_Matthews            2.03 
_exptl_crystal.density_method              ? 
_exptl_crystal.density_percent_sol         59.15 
_exptl_crystal.description                 
;Hexagonal shaped single large crystal. 
THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS.
;
_exptl_crystal.F_000                       ? 
_exptl_crystal.id                          1 
_exptl_crystal.preparation                 ? 
_exptl_crystal.size_max                    ? 
_exptl_crystal.size_mid                    ? 
_exptl_crystal.size_min                    ? 
_exptl_crystal.size_rad                    ? 
_exptl_crystal.colour_lustre               ? 
_exptl_crystal.colour_modifier             ? 
_exptl_crystal.colour_primary              ? 
_exptl_crystal.density_meas                ? 
_exptl_crystal.density_meas_esd            ? 
_exptl_crystal.density_meas_gt             ? 
_exptl_crystal.density_meas_lt             ? 
_exptl_crystal.density_meas_temp           ? 
_exptl_crystal.density_meas_temp_esd       ? 
_exptl_crystal.density_meas_temp_gt        ? 
_exptl_crystal.density_meas_temp_lt        ? 
_exptl_crystal.pdbx_crystal_image_url      ? 
_exptl_crystal.pdbx_crystal_image_format   ? 
_exptl_crystal.pdbx_mosaicity              ? 
_exptl_crystal.pdbx_mosaicity_esd          ? 
# 
_exptl_crystal_grow.apparatus       ? 
_exptl_crystal_grow.atmosphere      ? 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.details         ? 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.method_ref      ? 
_exptl_crystal_grow.pH              7.0 
_exptl_crystal_grow.pressure        ? 
_exptl_crystal_grow.pressure_esd    ? 
_exptl_crystal_grow.seeding         ? 
_exptl_crystal_grow.seeding_ref     ? 
_exptl_crystal_grow.temp            293 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.temp_esd        ? 
_exptl_crystal_grow.time            ? 
_exptl_crystal_grow.pdbx_details    '1mM DNA, 50mM sodium cacodylate buffer, 8mM Zncl2, 10mM spermine, 40% MPD' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
_diffrn.ambient_environment    ? 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.ambient_temp_esd       ? 
_diffrn.crystal_id             1 
_diffrn.crystal_support        ? 
_diffrn.crystal_treatment      ? 
_diffrn.details                ? 
_diffrn.id                     1 
_diffrn.ambient_pressure       ? 
_diffrn.ambient_pressure_esd   ? 
_diffrn.ambient_pressure_gt    ? 
_diffrn.ambient_pressure_lt    ? 
_diffrn.ambient_temp_gt        ? 
_diffrn.ambient_temp_lt        ? 
# 
_diffrn_detector.details                      'Bent collimating mirror' 
_diffrn_detector.detector                     CCD 
_diffrn_detector.diffrn_id                    1 
_diffrn_detector.type                         'MARMOSAIC 225 mm CCD' 
_diffrn_detector.area_resol_mean              ? 
_diffrn_detector.dtime                        ? 
_diffrn_detector.pdbx_frames_total            ? 
_diffrn_detector.pdbx_collection_time_total   ? 
_diffrn_detector.pdbx_collection_date         2013-07-01 
# 
_diffrn_radiation.collimation                      ? 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.filter_edge                      ? 
_diffrn_radiation.inhomogeneity                    ? 
_diffrn_radiation.monochromator                    'Si(III) monochromator' 
_diffrn_radiation.polarisn_norm                    ? 
_diffrn_radiation.polarisn_ratio                   ? 
_diffrn_radiation.probe                            ? 
_diffrn_radiation.type                             ? 
_diffrn_radiation.xray_symbol                      ? 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.pdbx_wavelength_list             ? 
_diffrn_radiation.pdbx_wavelength                  ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_analyzer                    ? 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.282 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.current                     ? 
_diffrn_source.details                     ? 
_diffrn_source.diffrn_id                   1 
_diffrn_source.power                       ? 
_diffrn_source.size                        ? 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.target                      ? 
_diffrn_source.type                        'ESRF BEAMLINE BM14' 
_diffrn_source.voltage                     ? 
_diffrn_source.take-off_angle              ? 
_diffrn_source.pdbx_wavelength_list        1.282 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_synchrotron_beamline   BM14 
_diffrn_source.pdbx_synchrotron_site       ESRF 
# 
_reflns.d_resolution_high            1.690 
_reflns.d_resolution_low             27.792 
_reflns.pdbx_number_measured_all     118422 
_reflns.number_obs                   16064 
_reflns.pdbx_Rmerge_I_obs            0.045 
_reflns.pdbx_netI_over_sigmaI        21.740 
_reflns.pdbx_chi_squared             1.007 
_reflns.percent_possible_obs         98.400 
_reflns.observed_criterion_sigma_I   -3.000 
_reflns.pdbx_Rrim_I_all              0.049 
_reflns.pdbx_CC_half                 0.999 
_reflns.B_iso_Wilson_estimate        27.710 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
_reflns.entry_id                     5IYE 
_reflns.observed_criterion_sigma_F   ? 
_reflns.number_all                   ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_redundancy              ? 
# 
loop_
_reflns_shell.pdbx_diffrn_id 
_reflns_shell.pdbx_ordinal 
_reflns_shell.d_res_high 
_reflns_shell.d_res_low 
_reflns_shell.number_measured_obs 
_reflns_shell.number_measured_all 
_reflns_shell.number_unique_obs 
_reflns_shell.pdbx_rejects 
_reflns_shell.Rmerge_I_obs 
_reflns_shell.meanI_over_sigI_obs 
_reflns_shell.pdbx_Rsym_value 
_reflns_shell.pdbx_chi_squared 
_reflns_shell.pdbx_redundancy 
_reflns_shell.percent_possible_obs 
_reflns_shell.pdbx_netI_over_sigmaI_obs 
_reflns_shell.number_possible 
_reflns_shell.number_unique_all 
_reflns_shell.Rmerge_F_all 
_reflns_shell.Rmerge_F_obs 
_reflns_shell.Rmerge_I_all 
_reflns_shell.meanI_over_sigI_all 
_reflns_shell.percent_possible_all 
_reflns_shell.pdbx_Rrim_I_all 
_reflns_shell.pdbx_Rpim_I_all 
_reflns_shell.pdbx_CC_half 
1 1 1.690 1.800  17576 ? 2457 0 0.276 5.690  ? ? ? ? ? 2644 ? ? ? ? ? 92.900  0.298 ? 0.968 
1 2 1.800 1.920  18535 ? 2500 0 0.178 9.280  ? ? ? ? ? 2500 ? ? ? ? ? 100.000 0.191 ? 0.988 
1 3 1.920 2.070  17157 ? 2302 0 0.116 14.400 ? ? ? ? ? 2302 ? ? ? ? ? 100.000 0.125 ? 0.996 
1 4 2.070 2.270  15780 ? 2116 0 0.081 20.520 ? ? ? ? ? 2116 ? ? ? ? ? 100.000 0.087 ? 0.997 
1 5 2.270 2.530  14174 ? 1884 0 0.059 28.100 ? ? ? ? ? 1884 ? ? ? ? ? 100.000 0.063 ? 0.999 
1 6 2.530 2.920  12874 ? 1732 0 0.048 34.150 ? ? ? ? ? 1732 ? ? ? ? ? 100.000 0.052 ? 0.999 
1 7 2.920 3.570  10449 ? 1410 0 0.040 39.430 ? ? ? ? ? 1410 ? ? ? ? ? 100.000 0.043 ? 0.999 
1 8 3.570 5.010  8111  ? 1107 0 0.039 41.510 ? ? ? ? ? 1110 ? ? ? ? ? 99.700  0.042 ? 0.999 
1 9 5.010 27.792 3766  ? 556  0 0.036 39.430 ? ? ? ? ? 629  ? ? ? ? ? 88.400  0.039 ? 0.999 
# 
_refine.entry_id                                 5IYE 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.ls_d_res_high                            1.6940 
_refine.ls_d_res_low                             27.7920 
_refine.pdbx_ls_sigma_F                          1.450 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.ls_percent_reflns_obs                    98.3200 
_refine.ls_number_reflns_obs                     16056 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_cross_valid_method               'FREE R-VALUE' 
_refine.ls_matrix_type                           ? 
_refine.pdbx_R_Free_selection_details            Random 
_refine.details                                  'THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS' 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_obs                          0.1914 
_refine.ls_R_factor_R_work                       0.1884 
_refine.ls_wR_factor_R_work                      ? 
_refine.ls_R_factor_R_free                       0.2195 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_percent_reflns_R_free                 9.9100 
_refine.ls_number_reflns_R_free                  1591 
_refine.ls_number_reflns_R_work                  14465 
_refine.ls_R_factor_R_free_error                 ? 
_refine.B_iso_mean                               34.4490 
_refine.solvent_model_param_bsol                 ? 
_refine.solvent_model_param_ksol                 ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
_refine.overall_SU_R_free                        ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            0.1700 
_refine.overall_SU_B                             ? 
_refine.solvent_model_details                    'FLAT BULK SOLVENT MODEL' 
_refine.pdbx_solvent_vdw_probe_radii             1.1100 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             0.9000 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.pdbx_starting_model                      3V9D 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_stereochemistry_target_values       ML 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.B_iso_max                                75.830 
_refine.B_iso_min                                24.060 
_refine.pdbx_overall_phase_error                 24.0800 
_refine.occupancy_max                            ? 
_refine.occupancy_min                            ? 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_R_factor_R_free_error_details         ? 
# 
_refine_hist.cycle_id                         final 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.d_res_high                       1.6940 
_refine_hist.d_res_low                        27.7920 
_refine_hist.pdbx_number_atoms_ligand         2 
_refine_hist.number_atoms_solvent             46 
_refine_hist.number_atoms_total               616 
_refine_hist.pdbx_number_residues_total       28 
_refine_hist.pdbx_B_iso_mean_ligand           69.42 
_refine_hist.pdbx_B_iso_mean_solvent          42.68 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   568 
# 
loop_
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.type 
_refine_ls_restr.number 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.pdbx_restraint_function 
'X-RAY DIFFRACTION' f_bond_d           636 0.013  ? ? ? 
'X-RAY DIFFRACTION' f_angle_d          978 1.553  ? ? ? 
'X-RAY DIFFRACTION' f_chiral_restr     110 0.078  ? ? ? 
'X-RAY DIFFRACTION' f_plane_restr      28  0.010  ? ? ? 
'X-RAY DIFFRACTION' f_dihedral_angle_d 272 14.044 ? ? ? 
# 
loop_
_refine_ls_shell.d_res_high 
_refine_ls_shell.d_res_low 
_refine_ls_shell.pdbx_total_number_of_bins_used 
_refine_ls_shell.percent_reflns_obs 
_refine_ls_shell.number_reflns_R_work 
_refine_ls_shell.R_factor_all 
_refine_ls_shell.R_factor_R_work 
_refine_ls_shell.R_factor_R_free 
_refine_ls_shell.percent_reflns_R_free 
_refine_ls_shell.number_reflns_R_free 
_refine_ls_shell.R_factor_R_free_error 
_refine_ls_shell.number_reflns_all 
_refine_ls_shell.number_reflns_obs 
_refine_ls_shell.pdbx_refine_id 
_refine_ls_shell.R_factor_obs 
1.6938 1.7484  5 87.0000  1179 . 0.2408 0.2542 . 132 . 1179 . 'X-RAY DIFFRACTION' . 
2.3727 2.6113  5 100.0000 1342 . 0.2189 0.2386 . 142 . 1342 . 'X-RAY DIFFRACTION' . 
2.6113 2.9888  5 100.0000 1341 . 0.2458 0.2674 . 154 . 1495 . 'X-RAY DIFFRACTION' . 
2.9888 3.7641  5 100.0000 1335 . 0.1606 0.2175 . 140 . 1475 . 'X-RAY DIFFRACTION' . 
3.7641 27.7955 5 95.0000  1257 . 0.1308 0.1505 . 139 . 1257 . 'X-RAY DIFFRACTION' . 
# 
_struct.entry_id                     5IYE 
_struct.title                        
'Comparison of X-ray crystal structures of a tetradecamer sequence d(CCCGGGTACCCGGG)2 at 1.7 resolution' 
_struct.pdbx_model_details           ? 
_struct.pdbx_formula_weight          ? 
_struct.pdbx_formula_weight_method   ? 
_struct.pdbx_model_type_details      ? 
_struct.pdbx_CASP_flag               N 
# 
_struct_keywords.entry_id        5IYE 
_struct_keywords.text            'A-DNA duplex, tetragonal space group, zinc interactions, DNA' 
_struct_keywords.pdbx_keywords   DNA 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 2 ? 
E N N 3 ? 
F N N 3 ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? A DG 13 N7 ? ? ? 1_555 C ZN  .  ZN ? ? A DG 13  A ZN  101 1_555 ? ? ? ? ? ? ?            2.556 ? ? 
metalc2  metalc ? ? C ZN .  ZN ? ? ? 1_555 E HOH .  O  ? ? A ZN 101 A HOH 214 1_555 ? ? ? ? ? ? ?            1.928 ? ? 
metalc3  metalc ? ? D ZN .  ZN ? ? ? 1_555 F HOH .  O  ? ? B ZN 101 B HOH 213 1_555 ? ? ? ? ? ? ?            2.466 ? ? 
hydrog1  hydrog ? ? A DC 1  N3 ? ? ? 1_555 B DG  14 N1 ? ? A DC 1   B DG  14  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ? ? A DC 1  N4 ? ? ? 1_555 B DG  14 O6 ? ? A DC 1   B DG  14  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ? ? A DC 1  O2 ? ? ? 1_555 B DG  14 N2 ? ? A DC 1   B DG  14  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ? ? A DC 2  N3 ? ? ? 1_555 B DG  13 N1 ? ? A DC 2   B DG  13  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ? ? A DC 2  N4 ? ? ? 1_555 B DG  13 O6 ? ? A DC 2   B DG  13  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ? ? A DC 2  O2 ? ? ? 1_555 B DG  13 N2 ? ? A DC 2   B DG  13  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ? ? A DC 3  N3 ? ? ? 1_555 B DG  12 N1 ? ? A DC 3   B DG  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ? ? A DC 3  N4 ? ? ? 1_555 B DG  12 O6 ? ? A DC 3   B DG  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ? ? A DC 3  O2 ? ? ? 1_555 B DG  12 N2 ? ? A DC 3   B DG  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ? ? A DG 4  N1 ? ? ? 1_555 B DC  11 N3 ? ? A DG 4   B DC  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ? ? A DG 4  N2 ? ? ? 1_555 B DC  11 O2 ? ? A DG 4   B DC  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ? ? A DG 4  O6 ? ? ? 1_555 B DC  11 N4 ? ? A DG 4   B DC  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ? ? A DG 5  N1 ? ? ? 1_555 B DC  10 N3 ? ? A DG 5   B DC  10  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ? ? A DG 5  N2 ? ? ? 1_555 B DC  10 O2 ? ? A DG 5   B DC  10  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ? ? A DG 5  O6 ? ? ? 1_555 B DC  10 N4 ? ? A DG 5   B DC  10  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ? ? A DG 6  N1 ? ? ? 1_555 B DC  9  N3 ? ? A DG 6   B DC  9   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ? ? A DG 6  N2 ? ? ? 1_555 B DC  9  O2 ? ? A DG 6   B DC  9   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ? ? A DG 6  O6 ? ? ? 1_555 B DC  9  N4 ? ? A DG 6   B DC  9   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ? ? A DT 7  N3 ? ? ? 1_555 B DA  8  N1 ? ? A DT 7   B DA  8   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ? ? A DT 7  O4 ? ? ? 1_555 B DA  8  N6 ? ? A DT 7   B DA  8   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ? ? A DA 8  N1 ? ? ? 1_555 B DT  7  N3 ? ? A DA 8   B DT  7   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ? ? A DA 8  N6 ? ? ? 1_555 B DT  7  O4 ? ? A DA 8   B DT  7   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ? ? A DC 9  N3 ? ? ? 1_555 B DG  6  N1 ? ? A DC 9   B DG  6   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ? ? A DC 9  N4 ? ? ? 1_555 B DG  6  O6 ? ? A DC 9   B DG  6   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ? ? A DC 9  O2 ? ? ? 1_555 B DG  6  N2 ? ? A DC 9   B DG  6   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG  5  N1 ? ? A DC 10  B DG  5   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog27 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG  5  O6 ? ? A DC 10  B DG  5   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog28 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG  5  N2 ? ? A DC 10  B DG  5   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog29 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG  4  N1 ? ? A DC 11  B DG  4   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog30 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG  4  O6 ? ? A DC 11  B DG  4   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog31 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG  4  N2 ? ? A DC 11  B DG  4   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog32 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC  3  N3 ? ? A DG 12  B DC  3   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog33 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC  3  O2 ? ? A DG 12  B DC  3   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog34 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC  3  N4 ? ? A DG 12  B DC  3   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog35 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC  2  N3 ? ? A DG 13  B DC  2   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog36 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC  2  O2 ? ? A DG 13  B DC  2   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog37 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC  2  N4 ? ? A DG 13  B DC  2   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog38 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC  1  N3 ? ? A DG 14  B DC  1   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog39 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC  1  O2 ? ? A DG 14  B DC  1   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog40 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC  1  N4 ? ? A DG 14  B DC  1   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A ZN 101 ? 2 'binding site for residue ZN A 101' 
AC2 Software B ZN 101 ? 4 'binding site for residue ZN B 101' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1 AC1 2 DG  A 13 ? DG  A 13  . ? 1_555 ? 
2 AC1 2 HOH E .  ? HOH A 214 . ? 1_555 ? 
3 AC2 4 DG  B 13 ? DG  B 13  . ? 1_555 ? 
4 AC2 4 HOH F .  ? HOH B 207 . ? 1_555 ? 
5 AC2 4 HOH F .  ? HOH B 210 . ? 1_555 ? 
6 AC2 4 HOH F .  ? HOH B 213 . ? 1_555 ? 
# 
_atom_sites.entry_id                    5IYE 
_atom_sites.fract_transf_matrix[1][1]   0.034150 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.034150 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.011336 
_atom_sites.fract_transf_vector[1]      0.000000 
_atom_sites.fract_transf_vector[2]      0.000000 
_atom_sites.fract_transf_vector[3]      0.000000 
# 
loop_
_atom_type.symbol 
C  
N  
O  
P  
ZN 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC DC A . n 
A 1 2  DC 2  2  2  DC DC A . n 
A 1 3  DC 3  3  3  DC DC A . n 
A 1 4  DG 4  4  4  DG DG A . n 
A 1 5  DG 5  5  5  DG DG A . n 
A 1 6  DG 6  6  6  DG DG A . n 
A 1 7  DT 7  7  7  DT DT A . n 
A 1 8  DA 8  8  8  DA DA A . n 
A 1 9  DC 9  9  9  DC DC A . n 
A 1 10 DC 10 10 10 DC DC A . n 
A 1 11 DC 11 11 11 DC DC A . n 
A 1 12 DG 12 12 12 DG DG A . n 
A 1 13 DG 13 13 13 DG DG A . n 
A 1 14 DG 14 14 14 DG DG A . n 
B 1 1  DC 1  1  1  DC DC B . n 
B 1 2  DC 2  2  2  DC DC B . n 
B 1 3  DC 3  3  3  DC DC B . n 
B 1 4  DG 4  4  4  DG DG B . n 
B 1 5  DG 5  5  5  DG DG B . n 
B 1 6  DG 6  6  6  DG DG B . n 
B 1 7  DT 7  7  7  DT DT B . n 
B 1 8  DA 8  8  8  DA DA B . n 
B 1 9  DC 9  9  9  DC DC B . n 
B 1 10 DC 10 10 10 DC DC B . n 
B 1 11 DC 11 11 11 DC DC B . n 
B 1 12 DG 12 12 12 DG DG B . n 
B 1 13 DG 13 13 13 DG DG B . n 
B 1 14 DG 14 14 14 DG DG B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 ZN  1  101 2  ZN  ZN  A . 
D 2 ZN  1  101 1  ZN  ZN  B . 
E 3 HOH 1  201 13 HOH HOH A . 
E 3 HOH 2  202 40 HOH HOH A . 
E 3 HOH 3  203 8  HOH HOH A . 
E 3 HOH 4  204 9  HOH HOH A . 
E 3 HOH 5  205 1  HOH HOH A . 
E 3 HOH 6  206 15 HOH HOH A . 
E 3 HOH 7  207 20 HOH HOH A . 
E 3 HOH 8  208 32 HOH HOH A . 
E 3 HOH 9  209 16 HOH HOH A . 
E 3 HOH 10 210 25 HOH HOH A . 
E 3 HOH 11 211 45 HOH HOH A . 
E 3 HOH 12 212 6  HOH HOH A . 
E 3 HOH 13 213 17 HOH HOH A . 
E 3 HOH 14 214 35 HOH HOH A . 
E 3 HOH 15 215 12 HOH HOH A . 
E 3 HOH 16 216 11 HOH HOH A . 
E 3 HOH 17 217 34 HOH HOH A . 
E 3 HOH 18 218 18 HOH HOH A . 
E 3 HOH 19 219 44 HOH HOH A . 
E 3 HOH 20 220 5  HOH HOH A . 
E 3 HOH 21 221 7  HOH HOH A . 
E 3 HOH 22 222 21 HOH HOH A . 
F 3 HOH 1  201 10 HOH HOH B . 
F 3 HOH 2  202 42 HOH HOH B . 
F 3 HOH 3  203 14 HOH HOH B . 
F 3 HOH 4  204 37 HOH HOH B . 
F 3 HOH 5  205 23 HOH HOH B . 
F 3 HOH 6  206 39 HOH HOH B . 
F 3 HOH 7  207 41 HOH HOH B . 
F 3 HOH 8  208 24 HOH HOH B . 
F 3 HOH 9  209 43 HOH HOH B . 
F 3 HOH 10 210 46 HOH HOH B . 
F 3 HOH 11 211 3  HOH HOH B . 
F 3 HOH 12 212 26 HOH HOH B . 
F 3 HOH 13 213 28 HOH HOH B . 
F 3 HOH 14 214 38 HOH HOH B . 
F 3 HOH 15 215 19 HOH HOH B . 
F 3 HOH 16 216 29 HOH HOH B . 
F 3 HOH 17 217 2  HOH HOH B . 
F 3 HOH 18 218 22 HOH HOH B . 
F 3 HOH 19 219 4  HOH HOH B . 
F 3 HOH 20 220 36 HOH HOH B . 
F 3 HOH 21 221 33 HOH HOH B . 
F 3 HOH 22 222 27 HOH HOH B . 
F 3 HOH 23 223 30 HOH HOH B . 
F 3 HOH 24 224 31 HOH HOH B . 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_and_software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 1650 ? 
1 MORE         -50  ? 
1 'SSA (A^2)'  5230 ? 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_pdbx_struct_conn_angle.id                    1 
_pdbx_struct_conn_angle.ptnr1_label_atom_id   N7 
_pdbx_struct_conn_angle.ptnr1_label_alt_id    ? 
_pdbx_struct_conn_angle.ptnr1_label_asym_id   A 
_pdbx_struct_conn_angle.ptnr1_label_comp_id   DG 
_pdbx_struct_conn_angle.ptnr1_label_seq_id    13 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id    ? 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id    A 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id    DG 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id     13 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code    ? 
_pdbx_struct_conn_angle.ptnr1_symmetry        1_555 
_pdbx_struct_conn_angle.ptnr2_label_atom_id   ZN 
_pdbx_struct_conn_angle.ptnr2_label_alt_id    ? 
_pdbx_struct_conn_angle.ptnr2_label_asym_id   C 
_pdbx_struct_conn_angle.ptnr2_label_comp_id   ZN 
_pdbx_struct_conn_angle.ptnr2_label_seq_id    . 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id    ? 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id    A 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id    ZN 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id     101 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code    ? 
_pdbx_struct_conn_angle.ptnr2_symmetry        1_555 
_pdbx_struct_conn_angle.ptnr3_label_atom_id   O 
_pdbx_struct_conn_angle.ptnr3_label_alt_id    ? 
_pdbx_struct_conn_angle.ptnr3_label_asym_id   E 
_pdbx_struct_conn_angle.ptnr3_label_comp_id   HOH 
_pdbx_struct_conn_angle.ptnr3_label_seq_id    . 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id    ? 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id    A 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id    HOH 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id     214 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code    ? 
_pdbx_struct_conn_angle.ptnr3_symmetry        1_555 
_pdbx_struct_conn_angle.value                 97.9 
_pdbx_struct_conn_angle.value_esd             ? 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2017-03-29 
2 'Structure model' 1 1 2017-04-19 
3 'Structure model' 1 2 2017-12-06 
4 'Structure model' 1 3 2019-01-30 
5 'Structure model' 1 4 2023-11-08 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Database references'    
2 3 'Structure model' 'Database references'    
3 4 'Structure model' 'Data collection'        
4 4 'Structure model' 'Database references'    
5 5 'Structure model' 'Data collection'        
6 5 'Structure model' 'Database references'    
7 5 'Structure model' 'Refinement description' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 3 'Structure model' citation                      
2 4 'Structure model' pdbx_related_exp_data_set     
3 5 'Structure model' chem_comp_atom                
4 5 'Structure model' chem_comp_bond                
5 5 'Structure model' database_2                    
6 5 'Structure model' pdbx_initial_refinement_model 
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 3 'Structure model' '_citation.journal_volume'            
2 3 'Structure model' '_citation.page_first'                
3 3 'Structure model' '_citation.page_last'                 
4 5 'Structure model' '_database_2.pdbx_DOI'                
5 5 'Structure model' '_database_2.pdbx_database_accession' 
# 
loop_
_pdbx_refine_tls.pdbx_refine_id 
_pdbx_refine_tls.id 
_pdbx_refine_tls.details 
_pdbx_refine_tls.method 
_pdbx_refine_tls.origin_x 
_pdbx_refine_tls.origin_y 
_pdbx_refine_tls.origin_z 
_pdbx_refine_tls.T[1][1] 
_pdbx_refine_tls.T[2][2] 
_pdbx_refine_tls.T[3][3] 
_pdbx_refine_tls.T[1][2] 
_pdbx_refine_tls.T[1][3] 
_pdbx_refine_tls.T[2][3] 
_pdbx_refine_tls.L[1][1] 
_pdbx_refine_tls.L[2][2] 
_pdbx_refine_tls.L[3][3] 
_pdbx_refine_tls.L[1][2] 
_pdbx_refine_tls.L[1][3] 
_pdbx_refine_tls.L[2][3] 
_pdbx_refine_tls.S[1][1] 
_pdbx_refine_tls.S[2][2] 
_pdbx_refine_tls.S[3][3] 
_pdbx_refine_tls.S[1][2] 
_pdbx_refine_tls.S[1][3] 
_pdbx_refine_tls.S[2][3] 
_pdbx_refine_tls.S[2][1] 
_pdbx_refine_tls.S[3][1] 
_pdbx_refine_tls.S[3][2] 
'X-RAY DIFFRACTION' 1 ? refined 2.0752 14.2471 -2.5128 0.2813 0.3563 0.3094 -0.0476 0.0108  -0.0532 -0.7336 0.9321 0.8464 -1.2092 
-0.3319 -0.8553 -0.1788 0.4188 0.0219 0.1111  -0.0728 -0.1728 -0.1690 0.1296  0.0547 
'X-RAY DIFFRACTION' 2 ? refined 2.0613 15.0277 2.0613  0.2747 0.3714 0.3233 0.0461  -0.0100 -0.0628 -0.9652 0.7738 0.6177 1.4515  
0.1571  -0.8753 -0.1552 0.4420 0.0537 -0.1129 0.0909  -0.0910 0.1955  -0.1736 0.0166 
# 
loop_
_pdbx_refine_tls_group.pdbx_refine_id 
_pdbx_refine_tls_group.id 
_pdbx_refine_tls_group.refine_tls_id 
_pdbx_refine_tls_group.beg_auth_asym_id 
_pdbx_refine_tls_group.beg_auth_seq_id 
_pdbx_refine_tls_group.end_auth_asym_id 
_pdbx_refine_tls_group.end_auth_seq_id 
_pdbx_refine_tls_group.selection_details 
_pdbx_refine_tls_group.beg_label_asym_id 
_pdbx_refine_tls_group.beg_label_seq_id 
_pdbx_refine_tls_group.end_label_asym_id 
_pdbx_refine_tls_group.end_label_seq_id 
_pdbx_refine_tls_group.selection 
'X-RAY DIFFRACTION' 1 1 A 1 A 14 
;chain 'A' and (resid 1 through 14 )
;
? ? ? ? ? 
'X-RAY DIFFRACTION' 2 2 B 1 B 14 
;chain 'B' and (resid 1 through 14 )
;
? ? ? ? ? 
# 
_pdbx_phasing_MR.entry_id                     5IYE 
_pdbx_phasing_MR.method_rotation              ? 
_pdbx_phasing_MR.method_translation           ? 
_pdbx_phasing_MR.model_details                ? 
_pdbx_phasing_MR.R_factor                     ? 
_pdbx_phasing_MR.R_rigid_body                 ? 
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc   ? 
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic   ? 
_pdbx_phasing_MR.d_res_high_rotation          3.910 
_pdbx_phasing_MR.d_res_low_rotation           27.770 
_pdbx_phasing_MR.d_res_high_translation       ? 
_pdbx_phasing_MR.d_res_low_translation        ? 
_pdbx_phasing_MR.packing                      ? 
_pdbx_phasing_MR.reflns_percent_rotation      ? 
_pdbx_phasing_MR.reflns_percent_translation   ? 
_pdbx_phasing_MR.sigma_F_rotation             ? 
_pdbx_phasing_MR.sigma_F_translation          ? 
_pdbx_phasing_MR.sigma_I_rotation             ? 
_pdbx_phasing_MR.sigma_I_translation          ? 
# 
_phasing.method   MR 
# 
loop_
_software.citation_id 
_software.classification 
_software.compiler_name 
_software.compiler_version 
_software.contact_author 
_software.contact_author_email 
_software.date 
_software.description 
_software.dependencies 
_software.hardware 
_software.language 
_software.location 
_software.mods 
_software.name 
_software.os 
_software.os_version 
_software.type 
_software.version 
_software.pdbx_ordinal 
? refinement        ? ? ? ? ? ? ? ? ? ? ? PHENIX      ? ? ? 1.10.1_2155 1 
? 'data collection' ? ? ? ? ? ? ? ? ? ? ? MxCuBE      ? ? ? 2.0         2 
? 'data reduction'  ? ? ? ? ? ? ? ? ? ? ? XDS         ? ? ? GPLv2       3 
? phasing           ? ? ? ? ? ? ? ? ? ? ? PHASER      ? ? ? 2.5.5       4 
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.21        5 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1  A DC 3 ? ? 110.24 108.30 1.94  0.30 N 
2  1 OP1   A DC 9 ? ? P     A DC 9 ? ? OP2 A DC 9 ? ? 128.78 119.60 9.18  1.50 N 
3  1 "O5'" A DC 9 ? ? P     A DC 9 ? ? OP2 A DC 9 ? ? 98.18  105.70 -7.52 0.90 N 
4  1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1  A DC 9 ? ? 110.13 108.30 1.83  0.30 N 
5  1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1  B DC 3 ? ? 110.90 108.30 2.60  0.30 N 
6  1 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1  B DT 7 ? ? 110.27 108.30 1.97  0.30 N 
7  1 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9  B DA 8 ? ? 110.13 108.30 1.83  0.30 N 
8  1 OP1   B DC 9 ? ? P     B DC 9 ? ? OP2 B DC 9 ? ? 129.12 119.60 9.52  1.50 N 
9  1 "O5'" B DC 9 ? ? P     B DC 9 ? ? OP2 B DC 9 ? ? 98.68  105.70 -7.02 0.90 N 
10 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1  B DC 9 ? ? 110.45 108.30 2.15  0.30 N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA  OP3    O  N N 1   
DA  P      P  N N 2   
DA  OP1    O  N N 3   
DA  OP2    O  N N 4   
DA  "O5'"  O  N N 5   
DA  "C5'"  C  N N 6   
DA  "C4'"  C  N R 7   
DA  "O4'"  O  N N 8   
DA  "C3'"  C  N S 9   
DA  "O3'"  O  N N 10  
DA  "C2'"  C  N N 11  
DA  "C1'"  C  N R 12  
DA  N9     N  Y N 13  
DA  C8     C  Y N 14  
DA  N7     N  Y N 15  
DA  C5     C  Y N 16  
DA  C6     C  Y N 17  
DA  N6     N  N N 18  
DA  N1     N  Y N 19  
DA  C2     C  Y N 20  
DA  N3     N  Y N 21  
DA  C4     C  Y N 22  
DA  HOP3   H  N N 23  
DA  HOP2   H  N N 24  
DA  "H5'"  H  N N 25  
DA  "H5''" H  N N 26  
DA  "H4'"  H  N N 27  
DA  "H3'"  H  N N 28  
DA  "HO3'" H  N N 29  
DA  "H2'"  H  N N 30  
DA  "H2''" H  N N 31  
DA  "H1'"  H  N N 32  
DA  H8     H  N N 33  
DA  H61    H  N N 34  
DA  H62    H  N N 35  
DA  H2     H  N N 36  
DC  OP3    O  N N 37  
DC  P      P  N N 38  
DC  OP1    O  N N 39  
DC  OP2    O  N N 40  
DC  "O5'"  O  N N 41  
DC  "C5'"  C  N N 42  
DC  "C4'"  C  N R 43  
DC  "O4'"  O  N N 44  
DC  "C3'"  C  N S 45  
DC  "O3'"  O  N N 46  
DC  "C2'"  C  N N 47  
DC  "C1'"  C  N R 48  
DC  N1     N  N N 49  
DC  C2     C  N N 50  
DC  O2     O  N N 51  
DC  N3     N  N N 52  
DC  C4     C  N N 53  
DC  N4     N  N N 54  
DC  C5     C  N N 55  
DC  C6     C  N N 56  
DC  HOP3   H  N N 57  
DC  HOP2   H  N N 58  
DC  "H5'"  H  N N 59  
DC  "H5''" H  N N 60  
DC  "H4'"  H  N N 61  
DC  "H3'"  H  N N 62  
DC  "HO3'" H  N N 63  
DC  "H2'"  H  N N 64  
DC  "H2''" H  N N 65  
DC  "H1'"  H  N N 66  
DC  H41    H  N N 67  
DC  H42    H  N N 68  
DC  H5     H  N N 69  
DC  H6     H  N N 70  
DG  OP3    O  N N 71  
DG  P      P  N N 72  
DG  OP1    O  N N 73  
DG  OP2    O  N N 74  
DG  "O5'"  O  N N 75  
DG  "C5'"  C  N N 76  
DG  "C4'"  C  N R 77  
DG  "O4'"  O  N N 78  
DG  "C3'"  C  N S 79  
DG  "O3'"  O  N N 80  
DG  "C2'"  C  N N 81  
DG  "C1'"  C  N R 82  
DG  N9     N  Y N 83  
DG  C8     C  Y N 84  
DG  N7     N  Y N 85  
DG  C5     C  Y N 86  
DG  C6     C  N N 87  
DG  O6     O  N N 88  
DG  N1     N  N N 89  
DG  C2     C  N N 90  
DG  N2     N  N N 91  
DG  N3     N  N N 92  
DG  C4     C  Y N 93  
DG  HOP3   H  N N 94  
DG  HOP2   H  N N 95  
DG  "H5'"  H  N N 96  
DG  "H5''" H  N N 97  
DG  "H4'"  H  N N 98  
DG  "H3'"  H  N N 99  
DG  "HO3'" H  N N 100 
DG  "H2'"  H  N N 101 
DG  "H2''" H  N N 102 
DG  "H1'"  H  N N 103 
DG  H8     H  N N 104 
DG  H1     H  N N 105 
DG  H21    H  N N 106 
DG  H22    H  N N 107 
DT  OP3    O  N N 108 
DT  P      P  N N 109 
DT  OP1    O  N N 110 
DT  OP2    O  N N 111 
DT  "O5'"  O  N N 112 
DT  "C5'"  C  N N 113 
DT  "C4'"  C  N R 114 
DT  "O4'"  O  N N 115 
DT  "C3'"  C  N S 116 
DT  "O3'"  O  N N 117 
DT  "C2'"  C  N N 118 
DT  "C1'"  C  N R 119 
DT  N1     N  N N 120 
DT  C2     C  N N 121 
DT  O2     O  N N 122 
DT  N3     N  N N 123 
DT  C4     C  N N 124 
DT  O4     O  N N 125 
DT  C5     C  N N 126 
DT  C7     C  N N 127 
DT  C6     C  N N 128 
DT  HOP3   H  N N 129 
DT  HOP2   H  N N 130 
DT  "H5'"  H  N N 131 
DT  "H5''" H  N N 132 
DT  "H4'"  H  N N 133 
DT  "H3'"  H  N N 134 
DT  "HO3'" H  N N 135 
DT  "H2'"  H  N N 136 
DT  "H2''" H  N N 137 
DT  "H1'"  H  N N 138 
DT  H3     H  N N 139 
DT  H71    H  N N 140 
DT  H72    H  N N 141 
DT  H73    H  N N 142 
DT  H6     H  N N 143 
HOH O      O  N N 144 
HOH H1     H  N N 145 
HOH H2     H  N N 146 
ZN  ZN     ZN N N 147 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DT  OP3   P      sing N N 113 
DT  OP3   HOP3   sing N N 114 
DT  P     OP1    doub N N 115 
DT  P     OP2    sing N N 116 
DT  P     "O5'"  sing N N 117 
DT  OP2   HOP2   sing N N 118 
DT  "O5'" "C5'"  sing N N 119 
DT  "C5'" "C4'"  sing N N 120 
DT  "C5'" "H5'"  sing N N 121 
DT  "C5'" "H5''" sing N N 122 
DT  "C4'" "O4'"  sing N N 123 
DT  "C4'" "C3'"  sing N N 124 
DT  "C4'" "H4'"  sing N N 125 
DT  "O4'" "C1'"  sing N N 126 
DT  "C3'" "O3'"  sing N N 127 
DT  "C3'" "C2'"  sing N N 128 
DT  "C3'" "H3'"  sing N N 129 
DT  "O3'" "HO3'" sing N N 130 
DT  "C2'" "C1'"  sing N N 131 
DT  "C2'" "H2'"  sing N N 132 
DT  "C2'" "H2''" sing N N 133 
DT  "C1'" N1     sing N N 134 
DT  "C1'" "H1'"  sing N N 135 
DT  N1    C2     sing N N 136 
DT  N1    C6     sing N N 137 
DT  C2    O2     doub N N 138 
DT  C2    N3     sing N N 139 
DT  N3    C4     sing N N 140 
DT  N3    H3     sing N N 141 
DT  C4    O4     doub N N 142 
DT  C4    C5     sing N N 143 
DT  C5    C7     sing N N 144 
DT  C5    C6     doub N N 145 
DT  C7    H71    sing N N 146 
DT  C7    H72    sing N N 147 
DT  C7    H73    sing N N 148 
DT  C6    H6     sing N N 149 
HOH O     H1     sing N N 150 
HOH O     H2     sing N N 151 
# 
_ndb_struct_conf_na.entry_id   5IYE 
_ndb_struct_conf_na.feature    'a-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 14 1_555 0.197  -0.105 -0.159 3.210  -0.225  -0.482 1  A_DC1:DG14_B A 1  ? B 14 ? 19 1 
1 A DC 2  1_555 B DG 13 1_555 0.246  -0.107 -0.016 4.685  -2.810  1.087  2  A_DC2:DG13_B A 2  ? B 13 ? 19 1 
1 A DC 3  1_555 B DG 12 1_555 0.132  0.013  -0.373 5.832  3.385   1.071  3  A_DC3:DG12_B A 3  ? B 12 ? 19 1 
1 A DG 4  1_555 B DC 11 1_555 -0.220 -0.103 0.172  3.217  -5.402  -0.975 4  A_DG4:DC11_B A 4  ? B 11 ? 19 1 
1 A DG 5  1_555 B DC 10 1_555 -0.318 -0.186 0.128  8.392  -10.558 -1.596 5  A_DG5:DC10_B A 5  ? B 10 ? 19 1 
1 A DG 6  1_555 B DC 9  1_555 -0.407 -0.141 -0.090 -5.949 -15.752 3.294  6  A_DG6:DC9_B  A 6  ? B 9  ? 19 1 
1 A DT 7  1_555 B DA 8  1_555 -0.132 -0.102 0.080  -0.746 -9.426  1.416  7  A_DT7:DA8_B  A 7  ? B 8  ? 20 1 
1 A DA 8  1_555 B DT 7  1_555 0.203  -0.112 0.068  2.654  -10.521 1.447  8  A_DA8:DT7_B  A 8  ? B 7  ? 20 1 
1 A DC 9  1_555 B DG 6  1_555 0.382  -0.122 -0.115 6.662  -16.005 4.441  9  A_DC9:DG6_B  A 9  ? B 6  ? 19 1 
1 A DC 10 1_555 B DG 5  1_555 0.254  -0.167 0.227  -9.025 -8.617  -1.147 10 A_DC10:DG5_B A 10 ? B 5  ? 19 1 
1 A DC 11 1_555 B DG 4  1_555 0.177  -0.089 0.244  -5.508 -2.967  -0.954 11 A_DC11:DG4_B A 11 ? B 4  ? 19 1 
1 A DG 12 1_555 B DC 3  1_555 -0.178 -0.139 -0.317 -3.999 3.711   0.382  12 A_DG12:DC3_B A 12 ? B 3  ? 19 1 
1 A DG 13 1_555 B DC 2  1_555 -0.266 -0.146 -0.138 -5.365 -3.617  0.434  13 A_DG13:DC2_B A 13 ? B 2  ? 19 1 
1 A DG 14 1_555 B DC 1  1_555 -0.300 -0.146 -0.036 -1.829 -0.949  -0.438 14 A_DG14:DC1_B A 14 ? B 1  ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1  1_555 B DG 14 1_555 A DC 2  1_555 B DG 13 1_555 -0.635 -2.306 3.317 -3.226 0.364  28.241 -4.782 0.538  3.338 0.743  
6.584   28.423 1  AA_DC1DC2:DG13DG14_BB A 1  ? B 14 ? A 2  ? B 13 ? 
1 A DC 2  1_555 B DG 13 1_555 A DC 3  1_555 B DG 12 1_555 -0.147 -2.166 3.412 0.117  -1.589 27.098 -4.190 0.344  3.530 -3.388 
-0.250  27.144 2  AA_DC2DC3:DG12DG13_BB A 2  ? B 13 ? A 3  ? B 12 ? 
1 A DC 3  1_555 B DG 12 1_555 A DG 4  1_555 B DC 11 1_555 -0.829 -1.942 3.535 -5.155 -2.626 29.977 -3.102 0.420  3.774 -5.018 
9.851   30.518 3  AA_DC3DG4:DC11DG12_BB A 3  ? B 12 ? A 4  ? B 11 ? 
1 A DG 4  1_555 B DC 11 1_555 A DG 5  1_555 B DC 10 1_555 -1.125 -1.887 3.112 -3.958 6.746  26.188 -5.517 1.490  2.689 14.482 
8.498   27.312 4  AA_DG4DG5:DC10DC11_BB A 4  ? B 11 ? A 5  ? B 10 ? 
1 A DG 5  1_555 B DC 10 1_555 A DG 6  1_555 B DC 9  1_555 1.131  -1.412 3.580 3.790  13.490 34.349 -4.106 -1.252 2.943 21.754 
-6.112  37.017 5  AA_DG5DG6:DC9DC10_BB  A 5  ? B 10 ? A 6  ? B 9  ? 
1 A DG 6  1_555 B DC 9  1_555 A DT 7  1_555 B DA 8  1_555 -0.530 -1.440 3.230 -0.996 1.962  30.430 -3.119 0.813  3.148 3.732  
1.894   30.507 6  AA_DG6DT7:DA8DC9_BB   A 6  ? B 9  ? A 7  ? B 8  ? 
1 A DT 7  1_555 B DA 8  1_555 A DA 8  1_555 B DT 7  1_555 -0.011 -1.201 3.154 0.928  9.116  33.540 -3.292 0.149  2.742 15.442 
-1.571  34.734 7  AA_DT7DA8:DT7DA8_BB   A 7  ? B 8  ? A 8  ? B 7  ? 
1 A DA 8  1_555 B DT 7  1_555 A DC 9  1_555 B DG 6  1_555 0.563  -1.421 3.260 0.702  2.723  29.805 -3.302 -0.949 3.132 5.279  
-1.360  29.935 8  AA_DA8DC9:DG6DT7_BB   A 8  ? B 7  ? A 9  ? B 6  ? 
1 A DC 9  1_555 B DG 6  1_555 A DC 10 1_555 B DG 5  1_555 -1.127 -1.431 3.582 -5.165 14.025 33.890 -4.226 1.053  2.920 22.738 
8.374   36.950 9  AA_DC9DC10:DG5DG6_BB  A 9  ? B 6  ? A 10 ? B 5  ? 
1 A DC 10 1_555 B DG 5  1_555 A DC 11 1_555 B DG 4  1_555 1.080  -1.893 3.150 3.491  6.733  26.681 -5.439 -1.484 2.716 14.229 
-7.377  27.719 10 AA_DC10DC11:DG4DG5_BB A 10 ? B 5  ? A 11 ? B 4  ? 
1 A DC 11 1_555 B DG 4  1_555 A DG 12 1_555 B DC 3  1_555 0.794  -1.984 3.422 5.514  -4.697 30.054 -2.709 -0.298 3.764 -8.895 
-10.444 30.895 11 AA_DC11DG12:DC3DG4_BB A 11 ? B 4  ? A 12 ? B 3  ? 
1 A DG 12 1_555 B DC 3  1_555 A DG 13 1_555 B DC 2  1_555 0.130  -2.138 3.463 1.280  0.791  27.242 -4.740 0.059  3.403 1.679  
-2.716  27.283 12 AA_DG12DG13:DC2DC3_BB A 12 ? B 3  ? A 13 ? B 2  ? 
1 A DG 13 1_555 B DC 2  1_555 A DG 14 1_555 B DC 1  1_555 0.663  -2.320 3.275 0.893  -2.045 27.942 -4.292 -1.151 3.451 -4.226 
-1.845  28.029 13 AA_DG13DG14:DC1DC2_BB A 13 ? B 2  ? A 14 ? B 1  ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'ZINC ION' ZN  
3 water      HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   3V9D 
_pdbx_initial_refinement_model.details          ? 
# 
_pdbx_related_exp_data_set.data_reference       10.5281/zenodo.2545595 
_pdbx_related_exp_data_set.data_set_type        'diffraction image data' 
_pdbx_related_exp_data_set.details              ? 
_pdbx_related_exp_data_set.metadata_reference   ? 
_pdbx_related_exp_data_set.ordinal              1 
#