HEADER TRANSFERASE/TRANSFERASE INHIBITOR 24-MAR-16 5IYS TITLE CRYSTAL STRUCTURE OF A DEHYDROSQUALENE SYNTHASE IN COMPLEX WITH LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHYTOENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ENTEROCOCCUS HIRAE (STRAIN ATCC 9790 / DSM SOURCE 4 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258); SOURCE 5 ORGANISM_TAXID: 768486 KEYWDS DEHYDROSQUALENE SYNTHASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.Z.LIU,W.D.LIU,C.C.CHEN,R.T.GUO REVDAT 2 08-NOV-23 5IYS 1 REMARK LINK REVDAT 1 29-MAR-17 5IYS 0 JRNL AUTH G.Z.LIU,W.D.LIU,C.C.CHEN,R.T.GUO JRNL TITL CRYSTAL STRUCTURE OF A DEHYDROSQUALENE SYNTHASE IN COMPLEX JRNL TITL 2 WITH LIGAND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 20009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1088 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1391 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2325 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : -0.85000 REMARK 3 B33 (A**2) : 0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.66000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.356 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2427 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3274 ; 1.445 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.085 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;35.417 ;24.262 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 438 ;15.951 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;20.969 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1839 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1417 ; 1.760 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2284 ; 2.801 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1010 ; 4.894 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 990 ; 7.511 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 289 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2470 9.2163 25.0662 REMARK 3 T TENSOR REMARK 3 T11: 0.0285 T22: 0.0393 REMARK 3 T33: 0.0408 T12: -0.0081 REMARK 3 T13: 0.0102 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.0678 L22: 0.5615 REMARK 3 L33: 0.4682 L12: 0.0485 REMARK 3 L13: 0.0792 L23: 0.0074 REMARK 3 S TENSOR REMARK 3 S11: -0.0312 S12: -0.0132 S13: -0.0033 REMARK 3 S21: -0.0818 S22: 0.0499 S23: -0.0222 REMARK 3 S31: 0.0092 S32: -0.0077 S33: -0.0187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5IYS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21148 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.25800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, PHASER REMARK 200 STARTING MODEL: 4E9U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 0.1M LI2SO4, 0.1M BIS REMARK 280 -TRIS PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.54500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 THR A 3 REMARK 465 ILE A 4 REMARK 465 ASN A 5 REMARK 465 ASN A 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 690 O HOH A 741 1.63 REMARK 500 MG MG A 503 O HOH A 607 1.67 REMARK 500 N ASP A 7 O HOH A 601 1.81 REMARK 500 O HOH A 733 O HOH A 767 1.83 REMARK 500 OE1 GLU A 11 O HOH A 602 1.98 REMARK 500 O HOH A 775 O HOH A 795 2.03 REMARK 500 O1B FPS A 507 O HOH A 603 2.07 REMARK 500 O HOH A 603 O HOH A 653 2.10 REMARK 500 O HOH A 785 O HOH A 793 2.11 REMARK 500 NH2 ARG A 53 O2A FPS A 506 2.14 REMARK 500 NH1 ARG A 73 O HOH A 604 2.14 REMARK 500 NE2 GLN A 219 O HOH A 605 2.14 REMARK 500 O HOH A 686 O HOH A 783 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 18 OE2 GLU A 229 1655 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 63 58.20 36.08 REMARK 500 ALA A 136 -47.33 -140.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 133 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 801 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 802 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 803 DISTANCE = 6.51 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 60 OD2 94.0 REMARK 620 3 FPS A 507 O1A 86.6 83.6 REMARK 620 4 HOH A 627 O 89.6 91.6 173.6 REMARK 620 5 HOH A 662 O 170.9 78.5 87.6 95.6 REMARK 620 6 HOH A 734 O 90.9 172.2 90.6 94.5 96.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD2 REMARK 620 2 ASP A 60 OD2 95.5 REMARK 620 3 FPS A 507 O1A 100.3 76.6 REMARK 620 4 FPS A 507 O2B 100.1 155.3 81.8 REMARK 620 5 HOH A 619 O 72.5 106.8 172.1 96.1 REMARK 620 6 HOH A 653 O 162.0 88.4 97.7 82.6 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 169 OD1 REMARK 620 2 FPS A 507 O2A 109.2 REMARK 620 3 HOH A 614 O 105.4 80.9 REMARK 620 4 HOH A 642 O 85.3 159.7 81.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FPS A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FPS A 507 DBREF 5IYS A 1 289 UNP I6T9U8 I6T9U8_ENTHA 1 289 SEQRES 1 A 289 MET ILE THR ILE ASN ASN ASP PRO PHE GLN GLU TYR GLN SEQRES 2 A 289 LYS ASP PHE ALA TYR CYS GLU SER ILE ILE LYS LYS ASN SEQRES 3 A 289 SER LYS SER PHE TYR LEU ALA PHE SER GLN LEU PRO LYS SEQRES 4 A 289 ARG LYS ALA GLN SER VAL TYR ALA VAL TYR ALA PHE CYS SEQRES 5 A 289 ARG ARG ALA ASP ASP LEU ILE ASP ARG ASP ASN ASN GLN SEQRES 6 A 289 ALA GLY LEU ARG GLN LEU GLU ARG GLN LEU LEU ASP PHE SEQRES 7 A 289 ASN GLU GLY LYS VAL PRO ASN ASP PRO VAL TRP ARG ALA SEQRES 8 A 289 LEU SER VAL VAL PHE ASP ASN PHE PRO MET VAL THR ALA SEQRES 9 A 289 PRO PHE PHE ASP MET LEU THR GLY GLN ARG LYS ASP ALA SEQRES 10 A 289 ASP PHE LYS GLN PRO GLU THR ARG LYS ASP LEU GLU GLU SEQRES 11 A 289 TYR CYS TYR TYR VAL ALA GLY SER VAL GLY LEU MET LEU SEQRES 12 A 289 LEU PRO LEU LEU THR GLU ARG PRO ALA ASP ILE VAL VAL SEQRES 13 A 289 PRO ALA LYS LYS LEU GLY GLU ALA MET GLN LEU THR ASN SEQRES 14 A 289 ILE LEU ARG ASP VAL GLY GLU ASP TYR GLN MET GLY ARG SEQRES 15 A 289 ILE TYR LEU THR LYS GLU ASP MET THR ARG PHE GLY VAL SEQRES 16 A 289 ALA THR THR MET LEU LYS GLU LYS GLN ALA GLN THR GLN SEQRES 17 A 289 LEU VAL ALA LEU TRP GLU SER LEU ALA LYS GLN ALA GLU SEQRES 18 A 289 ASN LEU TYR GLU GLU SER PHE GLU MET PHE PRO LEU ILE SEQRES 19 A 289 THR GLU ASP CYS ARG GLN ALA LEU ALA SER ALA ALA PHE SEQRES 20 A 289 ILE TYR ARG GLU GLN LEU ASN ILE VAL ARG LYS GLN HIS SEQRES 21 A 289 TYR SER LEU PHE ASP ASN LYS ASN LYS VAL SER HIS TYR SEQRES 22 A 289 ARG LYS VAL GLN LEU LEU LYS GLU VAL LYS SER TYR LEU SEQRES 23 A 289 LYS SER TYR HET SO4 A 501 5 HET SO4 A 502 5 HET MG A 503 1 HET MG A 504 1 HET MG A 505 1 HET FPS A 506 24 HET FPS A 507 24 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM FPS S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] HETNAM 2 FPS TRIHYDROGEN THIODIPHOSPHATE HETSYN FPS FARNESYL THIOPYROPHOSPHATE FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 MG 3(MG 2+) FORMUL 7 FPS 2(C15 H28 O6 P2 S) FORMUL 9 HOH *203(H2 O) HELIX 1 AA1 ASP A 7 TYR A 12 1 6 HELIX 2 AA2 TYR A 12 SER A 27 1 16 HELIX 3 AA3 SER A 27 SER A 35 1 9 HELIX 4 AA4 PRO A 38 ARG A 61 1 24 HELIX 5 AA5 ASN A 64 GLY A 81 1 18 HELIX 6 AA6 ASP A 86 PHE A 99 1 14 HELIX 7 AA7 THR A 103 ALA A 117 1 15 HELIX 8 AA8 THR A 124 ALA A 136 1 13 HELIX 9 AA9 ALA A 136 LEU A 144 1 9 HELIX 10 AB1 PRO A 145 LEU A 147 5 3 HELIX 11 AB2 ARG A 150 ASP A 153 5 4 HELIX 12 AB3 ILE A 154 ASP A 173 1 20 HELIX 13 AB4 ASP A 173 MET A 180 1 8 HELIX 14 AB5 THR A 186 GLY A 194 1 9 HELIX 15 AB6 ALA A 196 GLU A 202 5 7 HELIX 16 AB7 GLN A 206 PHE A 228 1 23 HELIX 17 AB8 GLU A 229 ILE A 234 5 6 HELIX 18 AB9 THR A 235 ASP A 237 5 3 HELIX 19 AC1 CYS A 238 GLN A 259 1 22 HELIX 20 AC2 SER A 271 SER A 288 1 18 LINK OD1 ASP A 56 MG MG A 504 1555 1555 2.09 LINK OD2 ASP A 56 MG MG A 505 1555 1555 2.23 LINK OD2 ASP A 60 MG MG A 504 1555 1555 2.02 LINK OD2 ASP A 60 MG MG A 505 1555 1555 2.45 LINK OD1 ASN A 169 MG MG A 503 1555 1555 2.14 LINK MG MG A 503 O2A FPS A 507 1555 1555 1.88 LINK MG MG A 503 O HOH A 614 1555 1555 1.98 LINK MG MG A 503 O HOH A 642 1555 1555 1.81 LINK MG MG A 504 O1A FPS A 507 1555 1555 2.34 LINK MG MG A 504 O HOH A 627 1555 1555 2.18 LINK MG MG A 504 O HOH A 662 1555 1555 2.35 LINK MG MG A 504 O HOH A 734 1555 1555 2.33 LINK MG MG A 505 O1A FPS A 507 1555 1555 2.25 LINK MG MG A 505 O2B FPS A 507 1555 1555 2.27 LINK MG MG A 505 O HOH A 619 1555 1555 2.07 LINK MG MG A 505 O HOH A 653 1555 1555 2.32 SITE 1 AC1 4 ARG A 114 SER A 271 HIS A 272 HOH A 677 SITE 1 AC2 6 LYS A 115 SER A 271 TYR A 273 HOH A 621 SITE 2 AC2 6 HOH A 629 HOH A 636 SITE 1 AC3 6 ASN A 169 ASP A 173 FPS A 507 HOH A 607 SITE 2 AC3 6 HOH A 614 HOH A 642 SITE 1 AC4 7 ASP A 56 ASP A 60 MG A 505 FPS A 507 SITE 2 AC4 7 HOH A 627 HOH A 662 HOH A 734 SITE 1 AC5 6 ASP A 56 ASP A 60 MG A 504 FPS A 507 SITE 2 AC5 6 HOH A 619 HOH A 653 SITE 1 AC6 12 SER A 27 PHE A 30 TYR A 49 ARG A 53 SITE 2 AC6 12 VAL A 139 GLY A 140 LEU A 161 ASN A 169 SITE 3 AC6 12 ARG A 172 LEU A 242 TYR A 249 FPS A 507 SITE 1 AC7 21 PHE A 34 TYR A 49 CYS A 52 ARG A 53 SITE 2 AC7 21 ASP A 56 ASP A 60 MET A 109 GLN A 113 SITE 3 AC7 21 VAL A 135 GLN A 166 ASN A 169 LYS A 267 SITE 4 AC7 21 MG A 503 MG A 504 MG A 505 FPS A 506 SITE 5 AC7 21 HOH A 603 HOH A 607 HOH A 614 HOH A 653 SITE 6 AC7 21 HOH A 662 CRYST1 37.238 41.090 93.477 90.00 96.35 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026854 0.000000 0.002989 0.00000 SCALE2 0.000000 0.024337 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010764 0.00000