HEADER HYDROLASE 29-MAR-16 5J1S TITLE TORSINA-LULL1 COMPLEX, H. SAPIENS, BOUND TO VHH-BS2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TORSIN-1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DYSTONIA 1 PROTEIN,TORSIN ATPASE-1A,TORSIN FAMILY 1 MEMBER COMPND 5 A; COMPND 6 EC: 3.6.4.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: TORSIN-1A-INTERACTING PROTEIN 2; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: LUMENAL DOMAIN-LIKE LAP1; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: VHH DOMAIN BS-2; COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TOR1A, DQ2, DYT1, TA, TORA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: LOBSTR; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: TOR1AIP2, IFRG15, LULL1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: LOBSTR; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 19 ORGANISM_TAXID: 30538; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: LOBSTR KEYWDS AAA+ ATPASE, TORSIN, ENDOPLASMIC RETICULUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.E.DEMIRCIOGLU,T.U.SCHWARTZ REVDAT 4 03-APR-24 5J1S 1 LINK REVDAT 3 11-DEC-19 5J1S 1 REMARK REVDAT 2 20-SEP-17 5J1S 1 REMARK REVDAT 1 17-AUG-16 5J1S 0 JRNL AUTH F.E.DEMIRCIOGLU,B.A.SOSA,J.INGRAM,H.L.PLOEGH,T.U.SCHWARTZ JRNL TITL STRUCTURES OF TORSINA AND ITS DISEASE-MUTANT COMPLEXED WITH JRNL TITL 2 AN ACTIVATOR REVEAL THE MOLECULAR BASIS FOR PRIMARY JRNL TITL 3 DYSTONIA. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27490483 JRNL DOI 10.7554/ELIFE.17983 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 132851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.510 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.5039 - 3.3718 0.99 10426 159 0.1472 0.1786 REMARK 3 2 3.3718 - 2.6763 1.00 10156 155 0.1495 0.1876 REMARK 3 3 2.6763 - 2.3380 1.00 10061 155 0.1356 0.1781 REMARK 3 4 2.3380 - 2.1242 1.00 10057 153 0.1240 0.1682 REMARK 3 5 2.1242 - 1.9719 1.00 10004 153 0.1225 0.1803 REMARK 3 6 1.9719 - 1.8557 1.00 9988 153 0.1223 0.1858 REMARK 3 7 1.8557 - 1.7627 1.00 9949 152 0.1316 0.2073 REMARK 3 8 1.7627 - 1.6860 1.00 9966 152 0.1330 0.2063 REMARK 3 9 1.6860 - 1.6211 1.00 9948 153 0.1390 0.1895 REMARK 3 10 1.6211 - 1.5651 0.98 9778 149 0.1519 0.2453 REMARK 3 11 1.5651 - 1.5162 0.92 9179 140 0.1682 0.2349 REMARK 3 12 1.5162 - 1.4728 0.84 8354 127 0.1934 0.2580 REMARK 3 13 1.4728 - 1.4341 0.75 7410 114 0.2303 0.2863 REMARK 3 14 1.4341 - 1.3991 0.56 5575 85 0.2774 0.3450 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 5424 REMARK 3 ANGLE : 1.250 7396 REMARK 3 CHIRALITY : 0.099 803 REMARK 3 PLANARITY : 0.008 957 REMARK 3 DIHEDRAL : 20.407 1972 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219789. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 132851 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.399 REMARK 200 RESOLUTION RANGE LOW (A) : 61.445 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 33.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4TVS_A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13 % PEG 6000 5 % MPD 100 MM MES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.86950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.54600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.32950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.54600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.86950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.32950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 49 REMARK 465 PRO A 50 REMARK 465 GLY A 51 REMARK 465 GLN A 52 REMARK 465 LYS A 53 REMARK 465 ARG A 54 REMARK 465 ASP A 332 REMARK 465 MET B 232 REMARK 465 SER B 233 REMARK 465 SER B 234 REMARK 465 VAL B 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 GLU A 310 CG CD OE1 OE2 REMARK 470 ARG B 302 NE CZ NH1 NH2 REMARK 470 LYS C 76 CG CD CE NZ REMARK 470 GLU C 89 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 152 O HOH A 501 1.87 REMARK 500 O HOH A 554 O HOH C 301 1.89 REMARK 500 O HOH A 650 O HOH A 665 2.00 REMARK 500 O HOH A 565 O HOH A 695 2.06 REMARK 500 O HOH C 333 O HOH C 354 2.07 REMARK 500 O HOH B 638 O HOH B 727 2.13 REMARK 500 O HOH A 701 O HOH B 788 2.16 REMARK 500 O HOH A 665 O HOH A 694 2.17 REMARK 500 OD2 ASP A 173 O HOH A 502 2.17 REMARK 500 O HOH C 350 O HOH C 381 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 164 41.97 -87.43 REMARK 500 SER A 243 -91.92 -133.13 REMARK 500 THR A 321 -4.41 74.24 REMARK 500 ASP C 56 13.68 81.44 REMARK 500 ALA C 92 161.91 176.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 744 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 833 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 109 OD1 REMARK 620 2 ATP A 401 O2G 175.9 REMARK 620 3 ATP A 401 O2B 90.2 93.0 REMARK 620 4 HOH A 546 O 93.8 89.0 87.6 REMARK 620 5 HOH A 547 O 84.1 93.0 96.8 175.1 REMARK 620 6 HOH A 562 O 87.4 89.8 171.3 84.2 91.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 320 O REMARK 620 2 GLN B 323 O 83.1 REMARK 620 3 VAL B 325 O 97.7 101.7 REMARK 620 4 HOH B 613 O 85.4 167.5 74.9 REMARK 620 5 HOH B 757 O 173.3 103.4 79.8 88.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 342 OG1 REMARK 620 2 HOH B 800 O 94.6 REMARK 620 3 THR C 58 O 88.0 175.8 REMARK 620 4 THR C 58 OG1 159.8 104.8 73.0 REMARK 620 5 HOH C 362 O 94.2 84.6 98.6 82.6 REMARK 620 6 HOH C 373 O 107.9 74.4 101.6 82.9 150.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 201 DBREF 5J1S A 51 332 UNP O14656 TOR1A_HUMAN 51 332 DBREF 5J1S B 233 470 UNP Q8NFQ8 TOIP2_HUMAN 233 470 DBREF 5J1S C 1 123 PDB 5J1S 5J1S 1 123 SEQADV 5J1S GLY A 49 UNP O14656 EXPRESSION TAG SEQADV 5J1S PRO A 50 UNP O14656 EXPRESSION TAG SEQADV 5J1S GLN A 171 UNP O14656 GLU 171 ENGINEERED MUTATION SEQADV 5J1S MET B 232 UNP Q8NFQ8 INITIATING METHIONINE SEQRES 1 A 284 GLY PRO GLY GLN LYS ARG SER LEU SER ARG GLU ALA LEU SEQRES 2 A 284 GLN LYS ASP LEU ASP ASP ASN LEU PHE GLY GLN HIS LEU SEQRES 3 A 284 ALA LYS LYS ILE ILE LEU ASN ALA VAL PHE GLY PHE ILE SEQRES 4 A 284 ASN ASN PRO LYS PRO LYS LYS PRO LEU THR LEU SER LEU SEQRES 5 A 284 HIS GLY TRP THR GLY THR GLY LYS ASN PHE VAL SER LYS SEQRES 6 A 284 ILE ILE ALA GLU ASN ILE TYR GLU GLY GLY LEU ASN SER SEQRES 7 A 284 ASP TYR VAL HIS LEU PHE VAL ALA THR LEU HIS PHE PRO SEQRES 8 A 284 HIS ALA SER ASN ILE THR LEU TYR LYS ASP GLN LEU GLN SEQRES 9 A 284 LEU TRP ILE ARG GLY ASN VAL SER ALA CYS ALA ARG SER SEQRES 10 A 284 ILE PHE ILE PHE ASP GLN MET ASP LYS MET HIS ALA GLY SEQRES 11 A 284 LEU ILE ASP ALA ILE LYS PRO PHE LEU ASP TYR TYR ASP SEQRES 12 A 284 LEU VAL ASP GLY VAL SER TYR GLN LYS ALA MET PHE ILE SEQRES 13 A 284 PHE LEU SER ASN ALA GLY ALA GLU ARG ILE THR ASP VAL SEQRES 14 A 284 ALA LEU ASP PHE TRP ARG SER GLY LYS GLN ARG GLU ASP SEQRES 15 A 284 ILE LYS LEU LYS ASP ILE GLU HIS ALA LEU SER VAL SER SEQRES 16 A 284 VAL PHE ASN ASN LYS ASN SER GLY PHE TRP HIS SER SER SEQRES 17 A 284 LEU ILE ASP ARG ASN LEU ILE ASP TYR PHE VAL PRO PHE SEQRES 18 A 284 LEU PRO LEU GLU TYR LYS HIS LEU LYS MET CYS ILE ARG SEQRES 19 A 284 VAL GLU MET GLN SER ARG GLY TYR GLU ILE ASP GLU ASP SEQRES 20 A 284 ILE VAL SER ARG VAL ALA GLU GLU MET THR PHE PHE PRO SEQRES 21 A 284 LYS GLU GLU ARG VAL PHE SER ASP LYS GLY CYS LYS THR SEQRES 22 A 284 VAL PHE THR LYS LEU ASP TYR TYR TYR ASP ASP SEQRES 1 B 239 MET SER SER VAL ASN SER TYR TYR SER SER PRO ALA GLN SEQRES 2 B 239 GLN VAL PRO LYS ASN PRO ALA LEU GLU ALA PHE LEU ALA SEQRES 3 B 239 GLN PHE SER GLN LEU GLU ASP LYS PHE PRO GLY GLN SER SEQRES 4 B 239 SER PHE LEU TRP GLN ARG GLY ARG LYS PHE LEU GLN LYS SEQRES 5 B 239 HIS LEU ASN ALA SER ASN PRO THR GLU PRO ALA THR ILE SEQRES 6 B 239 ILE PHE THR ALA ALA ARG GLU GLY ARG GLU THR LEU LYS SEQRES 7 B 239 CYS LEU SER HIS HIS VAL ALA ASP ALA TYR THR SER SER SEQRES 8 B 239 GLN LYS VAL SER PRO ILE GLN ILE ASP GLY ALA GLY ARG SEQRES 9 B 239 THR TRP GLN ASP SER ASP THR VAL LYS LEU LEU VAL ASP SEQRES 10 B 239 LEU GLU LEU SER TYR GLY PHE GLU ASN GLY GLN LYS ALA SEQRES 11 B 239 ALA VAL VAL HIS HIS PHE GLU SER PHE PRO ALA GLY SER SEQRES 12 B 239 THR LEU ILE PHE TYR LYS TYR CYS ASP HIS GLU ASN ALA SEQRES 13 B 239 ALA PHE LYS ASP VAL ALA LEU VAL LEU THR VAL LEU LEU SEQRES 14 B 239 GLU GLU GLU THR LEU GLU ALA SER VAL GLY PRO ARG GLU SEQRES 15 B 239 THR GLU GLU LYS VAL ARG ASP LEU LEU TRP ALA LYS PHE SEQRES 16 B 239 THR ASN SER ASP THR PRO THR SER PHE ASN HIS MET ASP SEQRES 17 B 239 SER ASP LYS LEU SER GLY LEU TRP SER ARG ILE SER HIS SEQRES 18 B 239 LEU VAL LEU PRO VAL GLN PRO VAL SER SER ILE GLU GLU SEQRES 19 B 239 GLN GLY CYS LEU PHE SEQRES 1 C 123 MET GLN VAL GLN LEU VAL GLU THR GLY GLY GLY LEU VAL SEQRES 2 C 123 GLN ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 C 123 GLY ASN ILE PHE SER PHE ASN VAL MET GLY TRP TYR ARG SEQRES 4 C 123 GLN ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA ALA ILE SEQRES 5 C 123 THR SER GLY ASP THR THR THR TYR ALA ASP SER VAL GLN SEQRES 6 C 123 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN ALA SEQRES 7 C 123 VAL TYR LEU GLN MET ASN SER LEU THR PRO GLU ASP THR SEQRES 8 C 123 ALA VAL TYR PHE CYS ASN ALA ARG ARG ASN PRO ILE ASN SEQRES 9 C 123 GLY PRO TYR TYR THR THR ALA TYR TRP GLY GLN GLY THR SEQRES 10 C 123 GLN VAL THR VAL SER SER HET ATP A 401 31 HET MG A 402 1 HET CL A 403 1 HET MES A 404 12 HET MG B 501 1 HET MG C 201 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 MG 3(MG 2+) FORMUL 6 CL CL 1- FORMUL 7 MES C6 H13 N O4 S FORMUL 10 HOH *565(H2 O) HELIX 1 AA1 SER A 57 LEU A 69 1 13 HELIX 2 AA2 GLN A 72 ASN A 88 1 17 HELIX 3 AA3 GLY A 107 TYR A 120 1 14 HELIX 4 AA4 GLY A 122 SER A 126 5 5 HELIX 5 AA5 ALA A 134 PHE A 138 1 5 HELIX 6 AA6 HIS A 140 SER A 142 5 3 HELIX 7 AA7 ASN A 143 CYS A 162 1 20 HELIX 8 AA8 GLN A 171 MET A 175 5 5 HELIX 9 AA9 HIS A 176 ASP A 188 1 13 HELIX 10 AB1 GLY A 210 SER A 224 1 15 HELIX 11 AB2 GLN A 227 ILE A 231 5 5 HELIX 12 AB3 LYS A 232 LEU A 240 1 9 HELIX 13 AB4 ASN A 246 TRP A 253 1 8 HELIX 14 AB5 GLU A 273 ARG A 288 1 16 HELIX 15 AB6 ASP A 293 MET A 304 1 12 HELIX 16 AB7 VAL A 322 TYR A 329 5 8 HELIX 17 AB8 SER B 241 GLN B 245 5 5 HELIX 18 AB9 ASN B 249 PHE B 266 1 18 HELIX 19 AC1 SER B 270 ASN B 286 1 17 HELIX 20 AC2 ALA B 301 GLU B 303 5 3 HELIX 21 AC3 GLY B 304 THR B 320 1 17 HELIX 22 AC4 ASP B 339 ASN B 357 1 19 HELIX 23 AC5 HIS B 366 PHE B 370 5 5 HELIX 24 AC6 PRO B 371 THR B 375 5 5 HELIX 25 AC7 LEU B 376 ASP B 383 1 8 HELIX 26 AC8 GLY B 410 THR B 427 1 18 HELIX 27 AC9 ASP B 439 SER B 451 1 13 HELIX 28 AD1 VAL B 460 GLY B 467 1 8 HELIX 29 AD2 ASP C 62 GLN C 65 5 4 HELIX 30 AD3 THR C 87 THR C 91 5 5 SHEET 1 AA1 5 VAL A 129 VAL A 133 0 SHEET 2 AA1 5 ILE A 166 ASP A 170 1 O ASP A 170 N PHE A 132 SHEET 3 AA1 5 MET A 202 SER A 207 1 O ILE A 204 N PHE A 169 SHEET 4 AA1 5 LEU A 96 GLY A 102 1 N LEU A 100 O PHE A 205 SHEET 5 AA1 5 TYR A 265 PHE A 269 1 O VAL A 267 N SER A 99 SHEET 1 AA2 2 PHE A 306 PHE A 307 0 SHEET 2 AA2 2 PHE A 314 SER A 315 -1 O PHE A 314 N PHE A 307 SHEET 1 AA3 5 ILE B 328 ASP B 331 0 SHEET 2 AA3 5 ALA B 361 HIS B 365 1 O VAL B 363 N ILE B 328 SHEET 3 AA3 5 ALA B 393 LEU B 399 1 O VAL B 395 N VAL B 364 SHEET 4 AA3 5 ALA B 294 ALA B 300 1 N ALA B 294 O LEU B 394 SHEET 5 AA3 5 VAL B 454 PRO B 456 1 O LEU B 455 N ILE B 297 SHEET 1 AA4 4 LEU C 5 THR C 8 0 SHEET 2 AA4 4 LEU C 19 ALA C 25 -1 O SER C 22 N THR C 8 SHEET 3 AA4 4 ALA C 78 MET C 83 -1 O MET C 83 N LEU C 19 SHEET 4 AA4 4 PHE C 68 ASP C 73 -1 N ASP C 73 O ALA C 78 SHEET 1 AA5 6 GLY C 11 GLN C 14 0 SHEET 2 AA5 6 THR C 117 SER C 122 1 O SER C 122 N VAL C 13 SHEET 3 AA5 6 ALA C 92 ARG C 100 -1 N TYR C 94 O THR C 117 SHEET 4 AA5 6 VAL C 34 GLN C 40 -1 N TYR C 38 O PHE C 95 SHEET 5 AA5 6 GLU C 47 THR C 53 -1 O ILE C 52 N MET C 35 SHEET 6 AA5 6 THR C 58 TYR C 60 -1 O THR C 59 N ALA C 51 SHEET 1 AA6 4 GLY C 11 GLN C 14 0 SHEET 2 AA6 4 THR C 117 SER C 122 1 O SER C 122 N VAL C 13 SHEET 3 AA6 4 ALA C 92 ARG C 100 -1 N TYR C 94 O THR C 117 SHEET 4 AA6 4 THR C 110 TRP C 113 -1 O THR C 110 N ARG C 100 SSBOND 1 CYS B 310 CYS B 468 1555 1555 2.07 LINK OD1 ASN A 109 MG MG A 402 1555 1555 2.01 LINK O2G ATP A 401 MG MG A 402 1555 1555 2.02 LINK O2B ATP A 401 MG MG A 402 1555 1555 2.02 LINK MG MG A 402 O HOH A 546 1555 1555 2.17 LINK MG MG A 402 O HOH A 547 1555 1555 2.07 LINK MG MG A 402 O HOH A 562 1555 1555 2.15 LINK O THR B 320 MG MG B 501 1555 1555 2.55 LINK O GLN B 323 MG MG B 501 1555 1555 2.17 LINK O VAL B 325 MG MG B 501 1555 1555 2.60 LINK OG1 THR B 342 MG MG C 201 1555 1555 2.44 LINK MG MG B 501 O HOH B 613 1555 1555 2.04 LINK MG MG B 501 O HOH B 757 1555 1555 2.30 LINK O HOH B 800 MG MG C 201 1555 1555 2.41 LINK O THR C 58 MG MG C 201 1555 1555 2.42 LINK OG1 THR C 58 MG MG C 201 1555 1555 2.80 LINK MG MG C 201 O HOH C 362 1555 1555 2.44 LINK MG MG C 201 O HOH C 373 1555 1555 2.23 CISPEP 1 PHE A 307 PRO A 308 0 -2.52 SITE 1 AC1 25 ASN A 68 LEU A 69 PHE A 70 THR A 104 SITE 2 AC1 25 GLY A 105 THR A 106 GLY A 107 LYS A 108 SITE 3 AC1 25 ASN A 109 PHE A 110 GLN A 171 ASN A 208 SITE 4 AC1 25 CYS A 280 CYS A 319 LYS A 320 MG A 402 SITE 5 AC1 25 HOH A 546 HOH A 547 HOH A 562 HOH A 578 SITE 6 AC1 25 HOH A 612 HOH A 641 HOH A 649 HIS B 384 SITE 7 AC1 25 ARG B 449 SITE 1 AC2 5 ASN A 109 ATP A 401 HOH A 546 HOH A 547 SITE 2 AC2 5 HOH A 562 SITE 1 AC3 3 ASN A 143 TYR A 147 ASN C 33 SITE 1 AC4 7 ASP A 64 ASN A 68 PHE A 110 LYS A 113 SITE 2 AC4 7 ILE A 114 GLU A 117 HOH A 580 SITE 1 AC5 5 THR B 320 GLN B 323 VAL B 325 HOH B 613 SITE 2 AC5 5 HOH B 757 SITE 1 AC6 5 THR B 342 HOH B 800 THR C 58 HOH C 362 SITE 2 AC6 5 HOH C 373 CRYST1 75.739 90.659 105.092 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013203 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009515 0.00000