HEADER HYDROLASE 29-MAR-16 5J1T TITLE TORSINADELTAE-LULL1 COMPLEX, H. SAPIENS, BOUND TO VHH-BS2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TORSIN-1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DYSTONIA 1 PROTEIN,TORSIN ATPASE-1A,TORSIN FAMILY 1 MEMBER COMPND 5 A; COMPND 6 EC: 3.6.4.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: TORSIN-1A-INTERACTING PROTEIN 2; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: LUMENAL DOMAIN-LIKE LAP1; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: VHH DOMAIN BS-2; COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TOR1A, DQ2, DYT1, TA, TORA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: LOBSTR; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: TOR1AIP2, IFRG15, LULL1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: LOBSTR; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 19 ORGANISM_TAXID: 30538; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: LOBSTR KEYWDS AAA+ ATPASE, TORSIN, ENDOPLASMIC RETICULUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.E.DEMIRCIOGLU,T.U.SCHWARTZ REVDAT 3 11-DEC-19 5J1T 1 REMARK REVDAT 2 20-SEP-17 5J1T 1 REMARK REVDAT 1 17-AUG-16 5J1T 0 JRNL AUTH F.E.DEMIRCIOGLU,B.A.SOSA,J.INGRAM,H.L.PLOEGH,T.U.SCHWARTZ JRNL TITL STRUCTURES OF TORSINA AND ITS DISEASE-MUTANT COMPLEXED WITH JRNL TITL 2 AN ACTIVATOR REVEAL THE MOLECULAR BASIS FOR PRIMARY JRNL TITL 3 DYSTONIA. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27490483 JRNL DOI 10.7554/ELIFE.17983 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 134334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.620 REMARK 3 FREE R VALUE TEST SET COUNT : 2182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 67.8124 - 3.5314 0.99 8834 146 0.1574 0.1736 REMARK 3 2 3.5314 - 2.8030 0.98 8512 143 0.1537 0.1481 REMARK 3 3 2.8030 - 2.4486 0.99 8539 139 0.1516 0.2018 REMARK 3 4 2.4486 - 2.2248 0.98 8356 137 0.1336 0.1760 REMARK 3 5 2.2248 - 2.0653 0.99 8406 140 0.1226 0.1549 REMARK 3 6 2.0653 - 1.9435 0.99 8396 139 0.1177 0.1557 REMARK 3 7 1.9435 - 1.8462 0.97 8253 137 0.1139 0.1576 REMARK 3 8 1.8462 - 1.7658 0.98 8330 138 0.1163 0.1855 REMARK 3 9 1.7658 - 1.6978 0.98 8319 137 0.1272 0.1928 REMARK 3 10 1.6978 - 1.6392 0.98 8273 136 0.1344 0.1676 REMARK 3 11 1.6392 - 1.5880 0.98 8264 134 0.1440 0.1972 REMARK 3 12 1.5880 - 1.5426 0.97 8160 136 0.1697 0.2000 REMARK 3 13 1.5426 - 1.5020 0.97 8202 137 0.1865 0.2287 REMARK 3 14 1.5020 - 1.4653 0.97 8185 135 0.2101 0.2641 REMARK 3 15 1.4653 - 1.4320 0.97 8138 134 0.2422 0.2605 REMARK 3 16 1.4320 - 1.4015 0.83 6985 114 0.2759 0.2917 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 5496 REMARK 3 ANGLE : 1.708 7485 REMARK 3 CHIRALITY : 0.089 806 REMARK 3 PLANARITY : 0.009 963 REMARK 3 DIHEDRAL : 14.672 2013 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 134334 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.402 REMARK 200 RESOLUTION RANGE LOW (A) : 67.733 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 30.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19 % PEG3350 200 MM AMMONIUM SULFATE REMARK 280 100 MM BIS-TRIS/HCL PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.71750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.66550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.22250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.66550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.71750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.22250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 49 REMARK 465 PRO A 50 REMARK 465 GLY A 51 REMARK 465 GLN A 52 REMARK 465 LYS A 53 REMARK 465 ASP A 331 REMARK 465 MET B 232 REMARK 465 SER B 233 REMARK 465 SER B 234 REMARK 465 VAL B 235 REMARK 465 MET C 1 REMARK 465 GLN C 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 76 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 322 O HOH B 501 1.82 REMARK 500 NZ LYS A 91 O HOH A 501 1.85 REMARK 500 O HOH B 573 O HOH B 600 1.87 REMARK 500 OE1 GLU A 117 O HOH A 502 1.95 REMARK 500 OG SER B 434 O HOH B 502 1.96 REMARK 500 O HOH A 716 O HOH A 772 1.97 REMARK 500 O HOH B 512 O HOH C 243 2.01 REMARK 500 O HOH A 604 O HOH B 639 2.01 REMARK 500 OE1 GLU A 121 O HOH A 503 2.02 REMARK 500 OE2 GLU B 402 O HOH B 503 2.07 REMARK 500 O HOH B 514 O HOH C 269 2.07 REMARK 500 O HOH B 629 O HOH B 663 2.07 REMARK 500 C SER B 322 O HOH B 501 2.07 REMARK 500 O HOH A 663 O HOH A 751 2.09 REMARK 500 O HOH B 734 O HOH B 751 2.11 REMARK 500 O HOH B 533 O HOH B 693 2.11 REMARK 500 N GLN B 323 O HOH B 504 2.12 REMARK 500 O HOH B 501 O HOH B 504 2.13 REMARK 500 SD MET A 172 O HOH A 751 2.14 REMARK 500 O ASN C 74 O HOH C 201 2.15 REMARK 500 NZ LYS B 360 OD1 ASP B 391 2.17 REMARK 500 O HOH B 510 O HOH B 618 2.18 REMARK 500 O THR B 427 O HOH B 505 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 698 O HOH A 721 2455 1.89 REMARK 500 O HOH A 556 O HOH B 565 4455 1.95 REMARK 500 O HOH B 742 O HOH C 279 4555 2.04 REMARK 500 O HOH A 632 O HOH C 267 2454 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 GLN C 14 CA - CB - CG ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 164 40.25 -90.44 REMARK 500 SER A 243 -90.36 -129.27 REMARK 500 ASP B 391 47.10 -108.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 757 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 758 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH C 281 DISTANCE = 6.56 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 109 OD1 REMARK 620 2 ATP A 401 O2G 174.5 REMARK 620 3 ATP A 401 O2B 89.9 91.0 REMARK 620 4 HOH A 573 O 96.5 89.0 86.2 REMARK 620 5 HOH A 548 O 84.4 90.1 95.9 177.7 REMARK 620 6 HOH A 537 O 88.8 91.2 170.5 84.6 93.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTB A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTB A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J1S RELATED DB: PDB DBREF 5J1T A 51 331 UNP O14656 TOR1A_HUMAN 51 332 DBREF 5J1T B 233 470 UNP Q8NFQ8 TOIP2_HUMAN 233 470 DBREF 5J1T C 1 123 PDB 5J1T 5J1T 1 123 SEQADV 5J1T GLY A 49 UNP O14656 EXPRESSION TAG SEQADV 5J1T PRO A 50 UNP O14656 EXPRESSION TAG SEQADV 5J1T GLN A 171 UNP O14656 GLU 171 ENGINEERED MUTATION SEQADV 5J1T A UNP O14656 GLU 302 DELETION SEQADV 5J1T MET B 232 UNP Q8NFQ8 INITIATING METHIONINE SEQRES 1 A 283 GLY PRO GLY GLN LYS ARG SER LEU SER ARG GLU ALA LEU SEQRES 2 A 283 GLN LYS ASP LEU ASP ASP ASN LEU PHE GLY GLN HIS LEU SEQRES 3 A 283 ALA LYS LYS ILE ILE LEU ASN ALA VAL PHE GLY PHE ILE SEQRES 4 A 283 ASN ASN PRO LYS PRO LYS LYS PRO LEU THR LEU SER LEU SEQRES 5 A 283 HIS GLY TRP THR GLY THR GLY LYS ASN PHE VAL SER LYS SEQRES 6 A 283 ILE ILE ALA GLU ASN ILE TYR GLU GLY GLY LEU ASN SER SEQRES 7 A 283 ASP TYR VAL HIS LEU PHE VAL ALA THR LEU HIS PHE PRO SEQRES 8 A 283 HIS ALA SER ASN ILE THR LEU TYR LYS ASP GLN LEU GLN SEQRES 9 A 283 LEU TRP ILE ARG GLY ASN VAL SER ALA CYS ALA ARG SER SEQRES 10 A 283 ILE PHE ILE PHE ASP GLN MET ASP LYS MET HIS ALA GLY SEQRES 11 A 283 LEU ILE ASP ALA ILE LYS PRO PHE LEU ASP TYR TYR ASP SEQRES 12 A 283 LEU VAL ASP GLY VAL SER TYR GLN LYS ALA MET PHE ILE SEQRES 13 A 283 PHE LEU SER ASN ALA GLY ALA GLU ARG ILE THR ASP VAL SEQRES 14 A 283 ALA LEU ASP PHE TRP ARG SER GLY LYS GLN ARG GLU ASP SEQRES 15 A 283 ILE LYS LEU LYS ASP ILE GLU HIS ALA LEU SER VAL SER SEQRES 16 A 283 VAL PHE ASN ASN LYS ASN SER GLY PHE TRP HIS SER SER SEQRES 17 A 283 LEU ILE ASP ARG ASN LEU ILE ASP TYR PHE VAL PRO PHE SEQRES 18 A 283 LEU PRO LEU GLU TYR LYS HIS LEU LYS MET CYS ILE ARG SEQRES 19 A 283 VAL GLU MET GLN SER ARG GLY TYR GLU ILE ASP GLU ASP SEQRES 20 A 283 ILE VAL SER ARG VAL ALA GLU MET THR PHE PHE PRO LYS SEQRES 21 A 283 GLU GLU ARG VAL PHE SER ASP LYS GLY CYS LYS THR VAL SEQRES 22 A 283 PHE THR LYS LEU ASP TYR TYR TYR ASP ASP SEQRES 1 B 239 MET SER SER VAL ASN SER TYR TYR SER SER PRO ALA GLN SEQRES 2 B 239 GLN VAL PRO LYS ASN PRO ALA LEU GLU ALA PHE LEU ALA SEQRES 3 B 239 GLN PHE SER GLN LEU GLU ASP LYS PHE PRO GLY GLN SER SEQRES 4 B 239 SER PHE LEU TRP GLN ARG GLY ARG LYS PHE LEU GLN LYS SEQRES 5 B 239 HIS LEU ASN ALA SER ASN PRO THR GLU PRO ALA THR ILE SEQRES 6 B 239 ILE PHE THR ALA ALA ARG GLU GLY ARG GLU THR LEU LYS SEQRES 7 B 239 CYS LEU SER HIS HIS VAL ALA ASP ALA TYR THR SER SER SEQRES 8 B 239 GLN LYS VAL SER PRO ILE GLN ILE ASP GLY ALA GLY ARG SEQRES 9 B 239 THR TRP GLN ASP SER ASP THR VAL LYS LEU LEU VAL ASP SEQRES 10 B 239 LEU GLU LEU SER TYR GLY PHE GLU ASN GLY GLN LYS ALA SEQRES 11 B 239 ALA VAL VAL HIS HIS PHE GLU SER PHE PRO ALA GLY SER SEQRES 12 B 239 THR LEU ILE PHE TYR LYS TYR CYS ASP HIS GLU ASN ALA SEQRES 13 B 239 ALA PHE LYS ASP VAL ALA LEU VAL LEU THR VAL LEU LEU SEQRES 14 B 239 GLU GLU GLU THR LEU GLU ALA SER VAL GLY PRO ARG GLU SEQRES 15 B 239 THR GLU GLU LYS VAL ARG ASP LEU LEU TRP ALA LYS PHE SEQRES 16 B 239 THR ASN SER ASP THR PRO THR SER PHE ASN HIS MET ASP SEQRES 17 B 239 SER ASP LYS LEU SER GLY LEU TRP SER ARG ILE SER HIS SEQRES 18 B 239 LEU VAL LEU PRO VAL GLN PRO VAL SER SER ILE GLU GLU SEQRES 19 B 239 GLN GLY CYS LEU PHE SEQRES 1 C 123 MET GLN VAL GLN LEU VAL GLU THR GLY GLY GLY LEU VAL SEQRES 2 C 123 GLN ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 C 123 GLY ASN ILE PHE SER PHE ASN VAL MET GLY TRP TYR ARG SEQRES 4 C 123 GLN ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA ALA ILE SEQRES 5 C 123 THR SER GLY ASP THR THR THR TYR ALA ASP SER VAL GLN SEQRES 6 C 123 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN ALA SEQRES 7 C 123 VAL TYR LEU GLN MET ASN SER LEU THR PRO GLU ASP THR SEQRES 8 C 123 ALA VAL TYR PHE CYS ASN ALA ARG ARG ASN PRO ILE ASN SEQRES 9 C 123 GLY PRO TYR TYR THR THR ALA TYR TRP GLY GLN GLY THR SEQRES 10 C 123 GLN VAL THR VAL SER SER HET ATP A 401 31 HET MG A 402 1 HET CL A 403 1 HET BTB A 404 14 HET BTB A 405 14 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETSYN BTB BIS-TRIS BUFFER FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 MG MG 2+ FORMUL 6 CL CL 1- FORMUL 7 BTB 2(C8 H19 N O5) FORMUL 9 HOH *631(H2 O) HELIX 1 AA1 SER A 57 LEU A 69 1 13 HELIX 2 AA2 GLN A 72 ASN A 88 1 17 HELIX 3 AA3 GLY A 107 TYR A 120 1 14 HELIX 4 AA4 GLY A 122 SER A 126 5 5 HELIX 5 AA5 ALA A 134 PHE A 138 1 5 HELIX 6 AA6 HIS A 140 SER A 142 5 3 HELIX 7 AA7 ASN A 143 CYS A 162 1 20 HELIX 8 AA8 GLN A 171 MET A 175 5 5 HELIX 9 AA9 HIS A 176 ASP A 188 1 13 HELIX 10 AB1 GLY A 210 SER A 224 1 15 HELIX 11 AB2 GLN A 227 ILE A 231 5 5 HELIX 12 AB3 LYS A 232 SER A 241 1 10 HELIX 13 AB4 ASN A 246 TRP A 253 1 8 HELIX 14 AB5 GLU A 273 ARG A 288 1 16 HELIX 15 AB6 ASP A 293 ALA A 301 1 9 HELIX 16 AB7 VAL A 321 TYR A 328 5 8 HELIX 17 AB8 SER B 241 GLN B 245 5 5 HELIX 18 AB9 ASN B 249 PHE B 266 1 18 HELIX 19 AC1 SER B 270 ASN B 286 1 17 HELIX 20 AC2 GLY B 304 TYR B 319 1 16 HELIX 21 AC3 ASP B 339 ASN B 357 1 19 HELIX 22 AC4 HIS B 366 PHE B 370 5 5 HELIX 23 AC5 PRO B 371 THR B 375 5 5 HELIX 24 AC6 LEU B 376 ASP B 383 1 8 HELIX 25 AC7 GLY B 410 THR B 427 1 18 HELIX 26 AC8 ASP B 439 SER B 451 1 13 HELIX 27 AC9 VAL B 460 GLY B 467 1 8 HELIX 28 AD1 ASP C 62 GLN C 65 5 4 HELIX 29 AD2 THR C 87 THR C 91 5 5 SHEET 1 AA1 5 VAL A 129 VAL A 133 0 SHEET 2 AA1 5 ILE A 166 ASP A 170 1 O ILE A 168 N PHE A 132 SHEET 3 AA1 5 MET A 202 SER A 207 1 O ILE A 204 N PHE A 169 SHEET 4 AA1 5 LEU A 96 GLY A 102 1 N LEU A 100 O PHE A 205 SHEET 5 AA1 5 TYR A 265 PHE A 269 1 O VAL A 267 N SER A 99 SHEET 1 AA2 2 PHE A 305 PHE A 306 0 SHEET 2 AA2 2 PHE A 313 SER A 314 -1 O PHE A 313 N PHE A 306 SHEET 1 AA3 5 ILE B 328 ASP B 331 0 SHEET 2 AA3 5 ALA B 361 HIS B 365 1 O VAL B 363 N ILE B 328 SHEET 3 AA3 5 ALA B 393 LEU B 399 1 O VAL B 395 N VAL B 364 SHEET 4 AA3 5 ALA B 294 ALA B 300 1 N ILE B 296 O LEU B 396 SHEET 5 AA3 5 VAL B 454 VAL B 457 1 O LEU B 455 N ILE B 297 SHEET 1 AA4 4 LEU C 5 THR C 8 0 SHEET 2 AA4 4 LEU C 19 ALA C 25 -1 O SER C 22 N THR C 8 SHEET 3 AA4 4 ALA C 78 MET C 83 -1 O MET C 83 N LEU C 19 SHEET 4 AA4 4 PHE C 68 ASP C 73 -1 N THR C 69 O GLN C 82 SHEET 1 AA5 6 GLY C 11 GLN C 14 0 SHEET 2 AA5 6 THR C 117 SER C 122 1 O SER C 122 N VAL C 13 SHEET 3 AA5 6 ALA C 92 ARG C 100 -1 N TYR C 94 O THR C 117 SHEET 4 AA5 6 VAL C 34 GLN C 40 -1 N TYR C 38 O PHE C 95 SHEET 5 AA5 6 GLU C 47 THR C 53 -1 O VAL C 49 N TRP C 37 SHEET 6 AA5 6 THR C 58 TYR C 60 -1 O THR C 59 N ALA C 51 SHEET 1 AA6 4 GLY C 11 GLN C 14 0 SHEET 2 AA6 4 THR C 117 SER C 122 1 O SER C 122 N VAL C 13 SHEET 3 AA6 4 ALA C 92 ARG C 100 -1 N TYR C 94 O THR C 117 SHEET 4 AA6 4 THR C 110 TRP C 113 -1 O THR C 110 N ARG C 100 SSBOND 1 CYS B 310 CYS B 468 1555 1555 2.06 LINK OD1 ASN A 109 MG MG A 402 1555 1555 1.98 LINK O2G ATP A 401 MG MG A 402 1555 1555 2.02 LINK O2B ATP A 401 MG MG A 402 1555 1555 2.11 LINK MG MG A 402 O HOH A 573 1555 1555 2.20 LINK MG MG A 402 O HOH A 548 1555 1555 2.08 LINK MG MG A 402 O HOH A 537 1555 1555 2.09 CISPEP 1 PHE A 306 PRO A 307 0 -13.46 SITE 1 AC1 26 ASN A 68 LEU A 69 PHE A 70 THR A 104 SITE 2 AC1 26 GLY A 105 THR A 106 GLY A 107 LYS A 108 SITE 3 AC1 26 ASN A 109 PHE A 110 GLN A 171 ASN A 208 SITE 4 AC1 26 CYS A 280 CYS A 318 LYS A 319 MG A 402 SITE 5 AC1 26 HOH A 510 HOH A 537 HOH A 548 HOH A 573 SITE 6 AC1 26 HOH A 626 HOH A 633 HOH A 679 HOH A 685 SITE 7 AC1 26 HIS B 384 ARG B 449 SITE 1 AC2 5 ASN A 109 ATP A 401 HOH A 537 HOH A 548 SITE 2 AC2 5 HOH A 573 SITE 1 AC3 3 ASN A 143 TYR A 147 ASN C 33 SITE 1 AC4 11 TRP A 103 GLU A 212 PHE A 306 ASP A 315 SITE 2 AC4 11 HOH A 587 HOH A 604 HOH A 637 ARG B 419 SITE 3 AC4 11 TRP B 423 SER B 440 HOH B 538 SITE 1 AC5 10 TYR A 274 GLU A 302 PHE A 305 GLU A 310 SITE 2 AC5 10 ARG A 311 VAL A 312 HOH A 505 HOH A 544 SITE 3 AC5 10 HOH A 717 HOH A 737 CRYST1 75.435 88.445 105.331 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013256 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011306 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009494 0.00000