data_5J3I
# 
_entry.id   5J3I 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.391 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   5J3I         pdb_00005j3i 10.2210/pdb5j3i/pdb 
WWPDB D_1000219885 ?            ?                   
BMRB  30054        ?            10.13018/BMR30054   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2016-11-16 
2 'Structure model' 1 1 2023-06-14 
3 'Structure model' 1 2 2024-05-15 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Data collection'     
2 2 'Structure model' 'Database references' 
3 2 'Structure model' Other                 
4 2 'Structure model' 'Structure summary'   
5 3 'Structure model' 'Data collection'     
6 3 'Structure model' 'Database references' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 2 'Structure model' database_2           
2 2 'Structure model' entity               
3 2 'Structure model' pdbx_database_status 
4 2 'Structure model' pdbx_nmr_software    
5 3 'Structure model' chem_comp_atom       
6 3 'Structure model' chem_comp_bond       
7 3 'Structure model' database_2           
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 2 'Structure model' '_database_2.pdbx_DOI'                       
2 2 'Structure model' '_database_2.pdbx_database_accession'        
3 2 'Structure model' '_entity.pdbx_number_of_molecules'           
4 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 
5 2 'Structure model' '_pdbx_nmr_software.name'                    
6 3 'Structure model' '_database_2.pdbx_DOI'                       
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_mr                  REL 
_pdbx_database_status.entry_id                        5J3I 
_pdbx_database_status.recvd_initial_deposition_date   2016-03-30 
_pdbx_database_status.SG_entry                        Y 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    PDBJ 
_pdbx_database_status.status_code_cs                  REL 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            REL 
# 
loop_
_pdbx_database_related.db_name 
_pdbx_database_related.details 
_pdbx_database_related.db_id 
_pdbx_database_related.content_type 
BMRB . 30054 unspecified 
PDB  . 5J3G  unspecified 
PDB  . 5J3F  unspecified 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Lan, W.' 1 
'Hu, Z.'  2 
'Cao, C.' 3 
# 
_citation.abstract                  ? 
_citation.abstract_id_CAS           ? 
_citation.book_id_ISBN              ? 
_citation.book_publisher            ? 
_citation.book_publisher_city       ? 
_citation.book_title                ? 
_citation.coordinate_linkage        ? 
_citation.country                   UK 
_citation.database_id_Medline       ? 
_citation.details                   ? 
_citation.id                        primary 
_citation.journal_abbrev            'Sci Rep' 
_citation.journal_id_ASTM           ? 
_citation.journal_id_CSD            ? 
_citation.journal_id_ISSN           2045-2322 
_citation.journal_full              ? 
_citation.journal_issue             ? 
_citation.journal_volume            6 
_citation.language                  ? 
_citation.page_first                25737 
_citation.page_last                 25737 
_citation.title                     'Structural investigation into physiological DNA phosphorothioate modification' 
_citation.year                      2016 
_citation.database_id_CSD           ? 
_citation.pdbx_database_id_DOI      10.1038/srep25737 
_citation.pdbx_database_id_PubMed   27169778 
_citation.unpublished_flag          ? 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Lan, W.'   1 ? 
primary 'Hu, Z.'    2 ? 
primary 'Shen, J.'  3 ? 
primary 'Wang, C.'  4 ? 
primary 'Jiang, F.' 5 ? 
primary 'Liu, H.'   6 ? 
primary 'Long, D.'  7 ? 
primary 'Liu, M.'   8 ? 
primary 'Cao, C.'   9 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer man 
;DNA (5'-D(*CP*GP*(SSG)P*CP*CP*GP*CP*CP*GP*A)-3')
;
3047.047 1 ? ? ? ? 
2 polymer man 
;DNA (5'-D(*TP*CP*GP*GP*CP*GP*(SSG)P*CP*CP*G)-3')
;
3078.058 1 ? ? ? ? 
# 
loop_
_entity_poly.entity_id 
_entity_poly.type 
_entity_poly.nstd_linkage 
_entity_poly.nstd_monomer 
_entity_poly.pdbx_seq_one_letter_code 
_entity_poly.pdbx_seq_one_letter_code_can 
_entity_poly.pdbx_strand_id 
_entity_poly.pdbx_target_identifier 
1 polydeoxyribonucleotide no yes '(DC)(DG)(GS)(DC)(DC)(DG)(DC)(DC)(DG)(DA)' CGGCCGCCGA A ? 
2 polydeoxyribonucleotide no yes '(DT)(DC)(DG)(DG)(DC)(DG)(GS)(DC)(DC)(DG)' TCGGCGGCCG B ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DG n 
1 3  GS n 
1 4  DC n 
1 5  DC n 
1 6  DG n 
1 7  DC n 
1 8  DC n 
1 9  DG n 
1 10 DA n 
2 1  DT n 
2 2  DC n 
2 3  DG n 
2 4  DG n 
2 5  DC n 
2 6  DG n 
2 7  GS n 
2 8  DC n 
2 9  DC n 
2 10 DG n 
# 
loop_
_entity_src_gen.entity_id 
_entity_src_gen.pdbx_src_id 
_entity_src_gen.pdbx_alt_source_flag 
_entity_src_gen.pdbx_seq_type 
_entity_src_gen.pdbx_beg_seq_num 
_entity_src_gen.pdbx_end_seq_num 
_entity_src_gen.gene_src_common_name 
_entity_src_gen.gene_src_genus 
_entity_src_gen.pdbx_gene_src_gene 
_entity_src_gen.gene_src_species 
_entity_src_gen.gene_src_strain 
_entity_src_gen.gene_src_tissue 
_entity_src_gen.gene_src_tissue_fraction 
_entity_src_gen.gene_src_details 
_entity_src_gen.pdbx_gene_src_fragment 
_entity_src_gen.pdbx_gene_src_scientific_name 
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 
_entity_src_gen.pdbx_gene_src_variant 
_entity_src_gen.pdbx_gene_src_cell_line 
_entity_src_gen.pdbx_gene_src_atcc 
_entity_src_gen.pdbx_gene_src_organ 
_entity_src_gen.pdbx_gene_src_organelle 
_entity_src_gen.pdbx_gene_src_cell 
_entity_src_gen.pdbx_gene_src_cellular_location 
_entity_src_gen.host_org_common_name 
_entity_src_gen.pdbx_host_org_scientific_name 
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 
_entity_src_gen.host_org_genus 
_entity_src_gen.pdbx_host_org_gene 
_entity_src_gen.pdbx_host_org_organ 
_entity_src_gen.host_org_species 
_entity_src_gen.pdbx_host_org_tissue 
_entity_src_gen.pdbx_host_org_tissue_fraction 
_entity_src_gen.pdbx_host_org_strain 
_entity_src_gen.pdbx_host_org_variant 
_entity_src_gen.pdbx_host_org_cell_line 
_entity_src_gen.pdbx_host_org_atcc 
_entity_src_gen.pdbx_host_org_culture_collection 
_entity_src_gen.pdbx_host_org_cell 
_entity_src_gen.pdbx_host_org_organelle 
_entity_src_gen.pdbx_host_org_cellular_location 
_entity_src_gen.pdbx_host_org_vector_type 
_entity_src_gen.pdbx_host_org_vector 
_entity_src_gen.host_org_details 
_entity_src_gen.expression_system_id 
_entity_src_gen.plasmid_name 
_entity_src_gen.plasmid_details 
_entity_src_gen.pdbx_description 
1 1 sample 'Biological sequence' 1 10 ? ? ? ? ? ? ? ? ? 'Streptomyces lividans' 1916 ? ? ? ? ? ? ? ? 'Streptomyces lividans' 1916 
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
2 1 sample 'Biological sequence' 1 10 ? ? ? ? ? ? ? ? ? 'Streptomyces lividans' 1916 ? ? ? ? ? ? ? ? 'Streptomyces lividans' 1916 
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P'   331.222 
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'    307.197 
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P'   347.221 
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P'   322.208 
GS 'DNA linking' n "GUANOSINE-5'-THIO-MONOPHOSPHATE"    ? 'C10 H14 N5 O6 P S' 363.287 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC CYT A . n 
A 1 2  DG 2  2  2  DG GUA A . n 
A 1 3  GS 3  3  3  GS SSG A . n 
A 1 4  DC 4  4  4  DC CYT A . n 
A 1 5  DC 5  5  5  DC CYT A . n 
A 1 6  DG 6  6  6  DG GUA A . n 
A 1 7  DC 7  7  7  DC CYT A . n 
A 1 8  DC 8  8  8  DC CYT A . n 
A 1 9  DG 9  9  9  DG GUA A . n 
A 1 10 DA 10 10 10 DA ADE A . n 
B 2 1  DT 1  11 11 DT THY B . n 
B 2 2  DC 2  12 12 DC CYT B . n 
B 2 3  DG 3  13 13 DG GUA B . n 
B 2 4  DG 4  14 14 DG GUA B . n 
B 2 5  DC 5  15 15 DC CYT B . n 
B 2 6  DG 6  16 16 DG GUA B . n 
B 2 7  GS 7  17 17 GS SSG B . n 
B 2 8  DC 8  18 18 DC CYT B . n 
B 2 9  DC 9  19 19 DC CYT B . n 
B 2 10 DG 10 20 20 DG GUA B . n 
# 
_exptl.absorpt_coefficient_mu     ? 
_exptl.absorpt_correction_T_max   ? 
_exptl.absorpt_correction_T_min   ? 
_exptl.absorpt_correction_type    ? 
_exptl.absorpt_process_details    ? 
_exptl.entry_id                   5J3I 
_exptl.crystals_number            ? 
_exptl.details                    ? 
_exptl.method                     'SOLUTION NMR' 
_exptl.method_details             ? 
# 
_struct.entry_id                     5J3I 
_struct.title                        'NMR solution structure of [Sp, Sp]-PT dsDNA' 
_struct.pdbx_model_details           ? 
_struct.pdbx_formula_weight          ? 
_struct.pdbx_formula_weight_method   ? 
_struct.pdbx_model_type_details      ? 
_struct.pdbx_CASP_flag               ? 
# 
_struct_keywords.entry_id        5J3I 
_struct_keywords.text            'DNA, [Sp, Sp]-PT dsDNA' 
_struct_keywords.pdbx_keywords   DNA 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
# 
loop_
_struct_ref.id 
_struct_ref.db_name 
_struct_ref.db_code 
_struct_ref.pdbx_db_accession 
_struct_ref.pdbx_db_isoform 
_struct_ref.entity_id 
_struct_ref.pdbx_seq_one_letter_code 
_struct_ref.pdbx_align_begin 
1 PDB 5J3I 5J3I ? 1 ? 1 
2 PDB 5J3I 5J3I ? 2 ? 1 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 5J3I A 1 ? 10 ? 5J3I 1  ? 10 ? 1  10 
2 2 5J3I B 1 ? 10 ? 5J3I 11 ? 20 ? 11 20 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 2220 ? 
1 MORE         7    ? 
1 'SSA (A^2)'  3660 ? 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   ? 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A DG 2  "O3'" ? ? ? 1_555 A GS 3  P  ? ? A DG 2  A GS 3  1_555 ? ? ? ? ? ? ?            1.615 ? ? 
covale2  covale both ? A GS 3  "O3'" ? ? ? 1_555 A DC 4  P  ? ? A GS 3  A DC 4  1_555 ? ? ? ? ? ? ?            1.613 ? ? 
covale3  covale both ? B DG 6  "O3'" ? ? ? 1_555 B GS 7  P  ? ? B DG 16 B GS 17 1_555 ? ? ? ? ? ? ?            1.615 ? ? 
covale4  covale both ? B GS 7  "O3'" ? ? ? 1_555 B DC 8  P  ? ? B GS 17 B DC 18 1_555 ? ? ? ? ? ? ?            1.612 ? ? 
hydrog1  hydrog ?    ? A DC 1  N3    ? ? ? 1_555 B DG 10 N1 ? ? A DC 1  B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A DC 1  N4    ? ? ? 1_555 B DG 10 O6 ? ? A DC 1  B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A DC 1  O2    ? ? ? 1_555 B DG 10 N2 ? ? A DC 1  B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A DG 2  N1    ? ? ? 1_555 B DC 9  N3 ? ? A DG 2  B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A DG 2  N2    ? ? ? 1_555 B DC 9  O2 ? ? A DG 2  B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A DG 2  O6    ? ? ? 1_555 B DC 9  N4 ? ? A DG 2  B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A GS 3  N1    ? ? ? 1_555 B DC 8  N3 ? ? A GS 3  B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A GS 3  N2    ? ? ? 1_555 B DC 8  O2 ? ? A GS 3  B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A GS 3  O6    ? ? ? 1_555 B DC 8  N4 ? ? A GS 3  B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A DC 4  N3    ? ? ? 1_555 B GS 7  N1 ? ? A DC 4  B GS 17 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A DC 4  N4    ? ? ? 1_555 B GS 7  O6 ? ? A DC 4  B GS 17 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A DC 4  O2    ? ? ? 1_555 B GS 7  N2 ? ? A DC 4  B GS 17 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? A DC 5  N3    ? ? ? 1_555 B DG 6  N1 ? ? A DC 5  B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? A DC 5  N4    ? ? ? 1_555 B DG 6  O6 ? ? A DC 5  B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? A DC 5  O2    ? ? ? 1_555 B DG 6  N2 ? ? A DC 5  B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? A DG 6  N1    ? ? ? 1_555 B DC 5  N3 ? ? A DG 6  B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? A DG 6  N2    ? ? ? 1_555 B DC 5  O2 ? ? A DG 6  B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? A DG 6  O6    ? ? ? 1_555 B DC 5  N4 ? ? A DG 6  B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ?    ? A DC 7  N3    ? ? ? 1_555 B DG 4  N1 ? ? A DC 7  B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ?    ? A DC 7  N4    ? ? ? 1_555 B DG 4  O6 ? ? A DC 7  B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ?    ? A DC 7  O2    ? ? ? 1_555 B DG 4  N2 ? ? A DC 7  B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ?    ? A DC 8  N3    ? ? ? 1_555 B DG 3  N1 ? ? A DC 8  B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ?    ? A DC 8  N4    ? ? ? 1_555 B DG 3  O6 ? ? A DC 8  B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ?    ? A DC 8  O2    ? ? ? 1_555 B DG 3  N2 ? ? A DC 8  B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ?    ? A DG 9  N1    ? ? ? 1_555 B DC 2  N3 ? ? A DG 9  B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ?    ? A DG 9  N2    ? ? ? 1_555 B DC 2  O2 ? ? A DG 9  B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog27 hydrog ?    ? A DG 9  O6    ? ? ? 1_555 B DC 2  N4 ? ? A DG 9  B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog28 hydrog ?    ? A DA 10 N1    ? ? ? 1_555 B DT 1  N3 ? ? A DA 10 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog29 hydrog ?    ? A DA 10 N6    ? ? ? 1_555 B DT 1  O4 ? ? A DA 10 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
_pdbx_nmr_ensemble.entry_id                                      5J3I 
_pdbx_nmr_ensemble.conformers_calculated_total_number            100 
_pdbx_nmr_ensemble.conformers_submitted_total_number             20 
_pdbx_nmr_ensemble.conformer_selection_criteria                  'structures with the lowest energy' 
_pdbx_nmr_ensemble.representative_conformer                      ? 
_pdbx_nmr_ensemble.average_constraints_per_residue               ? 
_pdbx_nmr_ensemble.average_constraint_violations_per_residue     ? 
_pdbx_nmr_ensemble.maximum_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.average_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.distance_constraint_violation_method          ? 
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method     ? 
# 
_pdbx_nmr_representative.entry_id             5J3I 
_pdbx_nmr_representative.conformer_id         1 
_pdbx_nmr_representative.selection_criteria   'lowest energy' 
# 
_pdbx_nmr_sample_details.solution_id      1 
_pdbx_nmr_sample_details.contents         '1.0 mM Sp dsDNA, 90% H2O/10% D2O' 
_pdbx_nmr_sample_details.solvent_system   '90% H2O/10% D2O' 
_pdbx_nmr_sample_details.label            'Sp dsDNA' 
_pdbx_nmr_sample_details.type             solution 
_pdbx_nmr_sample_details.details          ? 
# 
_pdbx_nmr_exptl_sample.solution_id           1 
_pdbx_nmr_exptl_sample.component             'Sp dsDNA' 
_pdbx_nmr_exptl_sample.concentration         1.0 
_pdbx_nmr_exptl_sample.concentration_range   ? 
_pdbx_nmr_exptl_sample.concentration_units   mM 
_pdbx_nmr_exptl_sample.isotopic_labeling     'natural abundance' 
# 
loop_
_pdbx_nmr_exptl_sample_conditions.conditions_id 
_pdbx_nmr_exptl_sample_conditions.temperature 
_pdbx_nmr_exptl_sample_conditions.pressure_units 
_pdbx_nmr_exptl_sample_conditions.pressure 
_pdbx_nmr_exptl_sample_conditions.pH 
_pdbx_nmr_exptl_sample_conditions.ionic_strength 
_pdbx_nmr_exptl_sample_conditions.details 
_pdbx_nmr_exptl_sample_conditions.ionic_strength_err 
_pdbx_nmr_exptl_sample_conditions.ionic_strength_units 
_pdbx_nmr_exptl_sample_conditions.label 
_pdbx_nmr_exptl_sample_conditions.pH_err 
_pdbx_nmr_exptl_sample_conditions.pH_units 
_pdbx_nmr_exptl_sample_conditions.pressure_err 
_pdbx_nmr_exptl_sample_conditions.temperature_err 
_pdbx_nmr_exptl_sample_conditions.temperature_units 
1 298 atm 1.0 7.0 360 ? ? mM H2O 0.1 pH ? ? K 
2 298 atm 1.0 7.0 360 ? ? mM D2O ?   pH ? ? K 
# 
loop_
_pdbx_nmr_exptl.experiment_id 
_pdbx_nmr_exptl.conditions_id 
_pdbx_nmr_exptl.solution_id 
_pdbx_nmr_exptl.type 
_pdbx_nmr_exptl.spectrometer_id 
_pdbx_nmr_exptl.sample_state 
1 1 1 '2D 1H-1H NOESY'   1 anisotropic 
2 2 1 '2D 1H-1H TOCSY'   1 anisotropic 
3 2 1 '2D 1H-1H DQCOSY'  1 anisotropic 
4 2 1 '2D 1H-1H NOESY'   1 anisotropic 
5 2 1 '2D 1H-31P HETCOR' 2 anisotropic 
# 
_pdbx_nmr_refine.entry_id           5J3I 
_pdbx_nmr_refine.method             'simulated annealing' 
_pdbx_nmr_refine.details            ? 
_pdbx_nmr_refine.software_ordinal   2 
# 
loop_
_pdbx_nmr_software.ordinal 
_pdbx_nmr_software.classification 
_pdbx_nmr_software.name 
_pdbx_nmr_software.version 
_pdbx_nmr_software.authors 
1 refinement                  'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 
2 'structure calculation'     'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 
3 'chemical shift assignment' Sparky       ? Goddard                                    
4 'peak picking'              Sparky       ? Goddard                                    
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA OP3    O N N 1   
DA P      P N N 2   
DA OP1    O N N 3   
DA OP2    O N N 4   
DA "O5'"  O N N 5   
DA "C5'"  C N N 6   
DA "C4'"  C N R 7   
DA "O4'"  O N N 8   
DA "C3'"  C N S 9   
DA "O3'"  O N N 10  
DA "C2'"  C N N 11  
DA "C1'"  C N R 12  
DA N9     N Y N 13  
DA C8     C Y N 14  
DA N7     N Y N 15  
DA C5     C Y N 16  
DA C6     C Y N 17  
DA N6     N N N 18  
DA N1     N Y N 19  
DA C2     C Y N 20  
DA N3     N Y N 21  
DA C4     C Y N 22  
DA HOP3   H N N 23  
DA HOP2   H N N 24  
DA "H5'"  H N N 25  
DA "H5''" H N N 26  
DA "H4'"  H N N 27  
DA "H3'"  H N N 28  
DA "HO3'" H N N 29  
DA "H2'"  H N N 30  
DA "H2''" H N N 31  
DA "H1'"  H N N 32  
DA H8     H N N 33  
DA H61    H N N 34  
DA H62    H N N 35  
DA H2     H N N 36  
DC OP3    O N N 37  
DC P      P N N 38  
DC OP1    O N N 39  
DC OP2    O N N 40  
DC "O5'"  O N N 41  
DC "C5'"  C N N 42  
DC "C4'"  C N R 43  
DC "O4'"  O N N 44  
DC "C3'"  C N S 45  
DC "O3'"  O N N 46  
DC "C2'"  C N N 47  
DC "C1'"  C N R 48  
DC N1     N N N 49  
DC C2     C N N 50  
DC O2     O N N 51  
DC N3     N N N 52  
DC C4     C N N 53  
DC N4     N N N 54  
DC C5     C N N 55  
DC C6     C N N 56  
DC HOP3   H N N 57  
DC HOP2   H N N 58  
DC "H5'"  H N N 59  
DC "H5''" H N N 60  
DC "H4'"  H N N 61  
DC "H3'"  H N N 62  
DC "HO3'" H N N 63  
DC "H2'"  H N N 64  
DC "H2''" H N N 65  
DC "H1'"  H N N 66  
DC H41    H N N 67  
DC H42    H N N 68  
DC H5     H N N 69  
DC H6     H N N 70  
DG OP3    O N N 71  
DG P      P N N 72  
DG OP1    O N N 73  
DG OP2    O N N 74  
DG "O5'"  O N N 75  
DG "C5'"  C N N 76  
DG "C4'"  C N R 77  
DG "O4'"  O N N 78  
DG "C3'"  C N S 79  
DG "O3'"  O N N 80  
DG "C2'"  C N N 81  
DG "C1'"  C N R 82  
DG N9     N Y N 83  
DG C8     C Y N 84  
DG N7     N Y N 85  
DG C5     C Y N 86  
DG C6     C N N 87  
DG O6     O N N 88  
DG N1     N N N 89  
DG C2     C N N 90  
DG N2     N N N 91  
DG N3     N N N 92  
DG C4     C Y N 93  
DG HOP3   H N N 94  
DG HOP2   H N N 95  
DG "H5'"  H N N 96  
DG "H5''" H N N 97  
DG "H4'"  H N N 98  
DG "H3'"  H N N 99  
DG "HO3'" H N N 100 
DG "H2'"  H N N 101 
DG "H2''" H N N 102 
DG "H1'"  H N N 103 
DG H8     H N N 104 
DG H1     H N N 105 
DG H21    H N N 106 
DG H22    H N N 107 
DT OP3    O N N 108 
DT P      P N N 109 
DT OP1    O N N 110 
DT OP2    O N N 111 
DT "O5'"  O N N 112 
DT "C5'"  C N N 113 
DT "C4'"  C N R 114 
DT "O4'"  O N N 115 
DT "C3'"  C N S 116 
DT "O3'"  O N N 117 
DT "C2'"  C N N 118 
DT "C1'"  C N R 119 
DT N1     N N N 120 
DT C2     C N N 121 
DT O2     O N N 122 
DT N3     N N N 123 
DT C4     C N N 124 
DT O4     O N N 125 
DT C5     C N N 126 
DT C7     C N N 127 
DT C6     C N N 128 
DT HOP3   H N N 129 
DT HOP2   H N N 130 
DT "H5'"  H N N 131 
DT "H5''" H N N 132 
DT "H4'"  H N N 133 
DT "H3'"  H N N 134 
DT "HO3'" H N N 135 
DT "H2'"  H N N 136 
DT "H2''" H N N 137 
DT "H1'"  H N N 138 
DT H3     H N N 139 
DT H71    H N N 140 
DT H72    H N N 141 
DT H73    H N N 142 
DT H6     H N N 143 
GS P      P N S 144 
GS OP1    O N N 145 
GS S2P    S N N 146 
GS OP3    O N N 147 
GS "O5'"  O N N 148 
GS "C5'"  C N N 149 
GS "C4'"  C N R 150 
GS "O4'"  O N N 151 
GS "C3'"  C N S 152 
GS "O3'"  O N N 153 
GS "C2'"  C N N 154 
GS "C1'"  C N R 155 
GS N9     N Y N 156 
GS C8     C Y N 157 
GS N7     N Y N 158 
GS C5     C Y N 159 
GS C6     C N N 160 
GS O6     O N N 161 
GS N1     N N N 162 
GS C2     C N N 163 
GS N2     N N N 164 
GS N3     N N N 165 
GS C4     C Y N 166 
GS HSP2   H N N 167 
GS HOP3   H N N 168 
GS "H5'"  H N N 169 
GS "H5''" H N N 170 
GS "H4'"  H N N 171 
GS "H3'"  H N N 172 
GS "HO3'" H N N 173 
GS "H2'"  H N N 174 
GS "H2''" H N N 175 
GS "H1'"  H N N 176 
GS H8     H N N 177 
GS HN1    H N N 178 
GS HN21   H N N 179 
GS HN22   H N N 180 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA OP3   P      sing N N 1   
DA OP3   HOP3   sing N N 2   
DA P     OP1    doub N N 3   
DA P     OP2    sing N N 4   
DA P     "O5'"  sing N N 5   
DA OP2   HOP2   sing N N 6   
DA "O5'" "C5'"  sing N N 7   
DA "C5'" "C4'"  sing N N 8   
DA "C5'" "H5'"  sing N N 9   
DA "C5'" "H5''" sing N N 10  
DA "C4'" "O4'"  sing N N 11  
DA "C4'" "C3'"  sing N N 12  
DA "C4'" "H4'"  sing N N 13  
DA "O4'" "C1'"  sing N N 14  
DA "C3'" "O3'"  sing N N 15  
DA "C3'" "C2'"  sing N N 16  
DA "C3'" "H3'"  sing N N 17  
DA "O3'" "HO3'" sing N N 18  
DA "C2'" "C1'"  sing N N 19  
DA "C2'" "H2'"  sing N N 20  
DA "C2'" "H2''" sing N N 21  
DA "C1'" N9     sing N N 22  
DA "C1'" "H1'"  sing N N 23  
DA N9    C8     sing Y N 24  
DA N9    C4     sing Y N 25  
DA C8    N7     doub Y N 26  
DA C8    H8     sing N N 27  
DA N7    C5     sing Y N 28  
DA C5    C6     sing Y N 29  
DA C5    C4     doub Y N 30  
DA C6    N6     sing N N 31  
DA C6    N1     doub Y N 32  
DA N6    H61    sing N N 33  
DA N6    H62    sing N N 34  
DA N1    C2     sing Y N 35  
DA C2    N3     doub Y N 36  
DA C2    H2     sing N N 37  
DA N3    C4     sing Y N 38  
DC OP3   P      sing N N 39  
DC OP3   HOP3   sing N N 40  
DC P     OP1    doub N N 41  
DC P     OP2    sing N N 42  
DC P     "O5'"  sing N N 43  
DC OP2   HOP2   sing N N 44  
DC "O5'" "C5'"  sing N N 45  
DC "C5'" "C4'"  sing N N 46  
DC "C5'" "H5'"  sing N N 47  
DC "C5'" "H5''" sing N N 48  
DC "C4'" "O4'"  sing N N 49  
DC "C4'" "C3'"  sing N N 50  
DC "C4'" "H4'"  sing N N 51  
DC "O4'" "C1'"  sing N N 52  
DC "C3'" "O3'"  sing N N 53  
DC "C3'" "C2'"  sing N N 54  
DC "C3'" "H3'"  sing N N 55  
DC "O3'" "HO3'" sing N N 56  
DC "C2'" "C1'"  sing N N 57  
DC "C2'" "H2'"  sing N N 58  
DC "C2'" "H2''" sing N N 59  
DC "C1'" N1     sing N N 60  
DC "C1'" "H1'"  sing N N 61  
DC N1    C2     sing N N 62  
DC N1    C6     sing N N 63  
DC C2    O2     doub N N 64  
DC C2    N3     sing N N 65  
DC N3    C4     doub N N 66  
DC C4    N4     sing N N 67  
DC C4    C5     sing N N 68  
DC N4    H41    sing N N 69  
DC N4    H42    sing N N 70  
DC C5    C6     doub N N 71  
DC C5    H5     sing N N 72  
DC C6    H6     sing N N 73  
DG OP3   P      sing N N 74  
DG OP3   HOP3   sing N N 75  
DG P     OP1    doub N N 76  
DG P     OP2    sing N N 77  
DG P     "O5'"  sing N N 78  
DG OP2   HOP2   sing N N 79  
DG "O5'" "C5'"  sing N N 80  
DG "C5'" "C4'"  sing N N 81  
DG "C5'" "H5'"  sing N N 82  
DG "C5'" "H5''" sing N N 83  
DG "C4'" "O4'"  sing N N 84  
DG "C4'" "C3'"  sing N N 85  
DG "C4'" "H4'"  sing N N 86  
DG "O4'" "C1'"  sing N N 87  
DG "C3'" "O3'"  sing N N 88  
DG "C3'" "C2'"  sing N N 89  
DG "C3'" "H3'"  sing N N 90  
DG "O3'" "HO3'" sing N N 91  
DG "C2'" "C1'"  sing N N 92  
DG "C2'" "H2'"  sing N N 93  
DG "C2'" "H2''" sing N N 94  
DG "C1'" N9     sing N N 95  
DG "C1'" "H1'"  sing N N 96  
DG N9    C8     sing Y N 97  
DG N9    C4     sing Y N 98  
DG C8    N7     doub Y N 99  
DG C8    H8     sing N N 100 
DG N7    C5     sing Y N 101 
DG C5    C6     sing N N 102 
DG C5    C4     doub Y N 103 
DG C6    O6     doub N N 104 
DG C6    N1     sing N N 105 
DG N1    C2     sing N N 106 
DG N1    H1     sing N N 107 
DG C2    N2     sing N N 108 
DG C2    N3     doub N N 109 
DG N2    H21    sing N N 110 
DG N2    H22    sing N N 111 
DG N3    C4     sing N N 112 
DT OP3   P      sing N N 113 
DT OP3   HOP3   sing N N 114 
DT P     OP1    doub N N 115 
DT P     OP2    sing N N 116 
DT P     "O5'"  sing N N 117 
DT OP2   HOP2   sing N N 118 
DT "O5'" "C5'"  sing N N 119 
DT "C5'" "C4'"  sing N N 120 
DT "C5'" "H5'"  sing N N 121 
DT "C5'" "H5''" sing N N 122 
DT "C4'" "O4'"  sing N N 123 
DT "C4'" "C3'"  sing N N 124 
DT "C4'" "H4'"  sing N N 125 
DT "O4'" "C1'"  sing N N 126 
DT "C3'" "O3'"  sing N N 127 
DT "C3'" "C2'"  sing N N 128 
DT "C3'" "H3'"  sing N N 129 
DT "O3'" "HO3'" sing N N 130 
DT "C2'" "C1'"  sing N N 131 
DT "C2'" "H2'"  sing N N 132 
DT "C2'" "H2''" sing N N 133 
DT "C1'" N1     sing N N 134 
DT "C1'" "H1'"  sing N N 135 
DT N1    C2     sing N N 136 
DT N1    C6     sing N N 137 
DT C2    O2     doub N N 138 
DT C2    N3     sing N N 139 
DT N3    C4     sing N N 140 
DT N3    H3     sing N N 141 
DT C4    O4     doub N N 142 
DT C4    C5     sing N N 143 
DT C5    C7     sing N N 144 
DT C5    C6     doub N N 145 
DT C7    H71    sing N N 146 
DT C7    H72    sing N N 147 
DT C7    H73    sing N N 148 
DT C6    H6     sing N N 149 
GS P     OP1    doub N N 150 
GS P     S2P    sing N N 151 
GS P     OP3    sing N N 152 
GS P     "O5'"  sing N N 153 
GS S2P   HSP2   sing N N 154 
GS OP3   HOP3   sing N N 155 
GS "O5'" "C5'"  sing N N 156 
GS "C5'" "C4'"  sing N N 157 
GS "C5'" "H5'"  sing N N 158 
GS "C5'" "H5''" sing N N 159 
GS "C4'" "O4'"  sing N N 160 
GS "C4'" "C3'"  sing N N 161 
GS "C4'" "H4'"  sing N N 162 
GS "O4'" "C1'"  sing N N 163 
GS "C3'" "O3'"  sing N N 164 
GS "C3'" "C2'"  sing N N 165 
GS "C3'" "H3'"  sing N N 166 
GS "O3'" "HO3'" sing N N 167 
GS "C2'" "C1'"  sing N N 168 
GS "C2'" "H2'"  sing N N 169 
GS "C2'" "H2''" sing N N 170 
GS "C1'" N9     sing N N 171 
GS "C1'" "H1'"  sing N N 172 
GS N9    C8     sing Y N 173 
GS N9    C4     sing Y N 174 
GS C8    N7     doub Y N 175 
GS C8    H8     sing N N 176 
GS N7    C5     sing Y N 177 
GS C5    C6     sing N N 178 
GS C5    C4     doub Y N 179 
GS C6    O6     doub N N 180 
GS C6    N1     sing N N 181 
GS N1    C2     sing N N 182 
GS N1    HN1    sing N N 183 
GS C2    N2     sing N N 184 
GS C2    N3     doub N N 185 
GS N2    HN21   sing N N 186 
GS N2    HN22   sing N N 187 
GS N3    C4     sing N N 188 
# 
_ndb_struct_conf_na.entry_id   5J3I 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 10 1_555 0.211  -0.142 0.188 -4.396 -5.052  -3.623 1  A_DC1:DG20_B  A 1  ? B 20 ? 19 1 
1 A DG 2  1_555 B DC 9  1_555 -0.241 -0.150 0.112 3.289  -8.615  -3.137 2  A_DG2:DC19_B  A 2  ? B 19 ? 19 1 
1 A GS 3  1_555 B DC 8  1_555 -0.378 -0.208 0.002 6.261  -8.113  -3.559 3  A_GS3:DC18_B  A 3  ? B 18 ? 19 1 
1 A DC 4  1_555 B GS 7  1_555 0.308  -0.184 0.018 -5.774 -10.408 -2.810 4  A_DC4:GS17_B  A 4  ? B 17 ? 19 1 
1 A DC 5  1_555 B DG 6  1_555 0.247  -0.183 0.152 -2.632 -12.550 -3.448 5  A_DC5:DG16_B  A 5  ? B 16 ? 19 1 
1 A DG 6  1_555 B DC 5  1_555 -0.242 -0.185 0.220 1.873  -11.688 -4.073 6  A_DG6:DC15_B  A 6  ? B 15 ? 19 1 
1 A DC 7  1_555 B DG 4  1_555 0.224  -0.166 0.168 -2.913 -9.925  -3.591 7  A_DC7:DG14_B  A 7  ? B 14 ? 19 1 
1 A DC 8  1_555 B DG 3  1_555 0.252  -0.158 0.117 -3.560 -7.899  -3.222 8  A_DC8:DG13_B  A 8  ? B 13 ? 19 1 
1 A DG 9  1_555 B DC 2  1_555 -0.238 -0.160 0.158 3.587  -8.237  -3.383 9  A_DG9:DC12_B  A 9  ? B 12 ? 19 1 
1 A DA 10 1_555 B DT 1  1_555 0.061  -0.077 0.096 4.407  -0.615  -3.952 10 A_DA10:DT11_B A 10 ? B 11 ? 20 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1 1_555 B DG 10 1_555 A DG 2  1_555 B DC 9 1_555 -0.050 0.402  3.271 0.488  9.151  29.982 -1.016 0.186  3.249 17.190 -0.917 
31.320 1 AA_DC1DG2:DC19DG20_BB  A 1 ? B 20 ? A 2  ? B 19 ? 
1 A DG 2 1_555 B DC 9  1_555 A GS 3  1_555 B DC 8 1_555 0.182  0.394  3.271 1.330  3.799  38.370 0.124  -0.111 3.298 5.761  -2.017 
38.573 2 AA_DG2GS3:DC18DC19_BB  A 2 ? B 19 ? A 3  ? B 18 ? 
1 A GS 3 1_555 B DC 8  1_555 A DC 4  1_555 B GS 7 1_555 -0.066 0.407  4.025 -0.104 -0.818 43.447 0.647  0.077  4.017 -1.105 0.140  
43.455 3 AA_GS3DC4:GS17DC18_BB  A 3 ? B 18 ? A 4  ? B 17 ? 
1 A DC 4 1_555 B GS 7  1_555 A DC 5  1_555 B DG 6 1_555 -0.405 0.562  3.348 -2.014 -4.890 39.657 1.392  0.357  3.275 -7.170 2.953  
39.994 4 AA_DC4DC5:DG16GS17_BB  A 4 ? B 17 ? A 5  ? B 16 ? 
1 A DC 5 1_555 B DG 6  1_555 A DG 6  1_555 B DC 5 1_555 -0.053 0.656  3.431 -0.798 -6.407 37.989 1.816  -0.022 3.281 -9.756 1.215  
38.513 5 AA_DC5DG6:DC15DG16_BB  A 5 ? B 16 ? A 6  ? B 15 ? 
1 A DG 6 1_555 B DC 5  1_555 A DC 7  1_555 B DG 4 1_555 0.386  0.529  3.631 1.620  -0.965 41.918 0.851  -0.352 3.630 -1.348 -2.263 
41.959 6 AA_DG6DC7:DG14DC15_BB  A 6 ? B 15 ? A 7  ? B 14 ? 
1 A DC 7 1_555 B DG 4  1_555 A DC 8  1_555 B DG 3 1_555 -0.139 0.380  3.488 -0.778 1.959  38.871 0.316  0.108  3.504 2.941  1.168  
38.926 7 AA_DC7DC8:DG13DG14_BB  A 7 ? B 14 ? A 8  ? B 13 ? 
1 A DC 8 1_555 B DG 3  1_555 A DG 9  1_555 B DC 2 1_555 0.158  0.382  3.307 -0.016 4.278  34.027 -0.035 -0.270 3.329 7.275  0.027  
34.287 8 AA_DC8DG9:DC12DG13_BB  A 8 ? B 13 ? A 9  ? B 12 ? 
1 A DG 9 1_555 B DC 2  1_555 A DA 10 1_555 B DT 1 1_555 0.119  -0.035 3.578 -0.597 5.488  34.920 -0.944 -0.292 3.529 9.074  0.987  
35.340 9 AA_DG9DA10:DT11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? 
# 
loop_
_pdbx_nmr_spectrometer.spectrometer_id 
_pdbx_nmr_spectrometer.model 
_pdbx_nmr_spectrometer.type 
_pdbx_nmr_spectrometer.manufacturer 
_pdbx_nmr_spectrometer.field_strength 
_pdbx_nmr_spectrometer.details 
1 DD2 ? Agilent 600 ? 
2 DD2 ? Agilent 500 ? 
# 
_atom_sites.entry_id                    5J3I 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
H 
N 
O 
P 
S 
# 
loop_