HEADER OXIDOREDUCTASE 31-MAR-16 5J3R TITLE CRYSTAL STRUCTURE OF YEAST MONOTHIOL GLUTAREDOXIN GRX6 IN COMPLEX WITH TITLE 2 A GLUTATHIONE-COORDINATED [2FE-2S] CLUSTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOTHIOL GLUTAREDOXIN-6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 37-231; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 STRAIN: S288C; SOURCE 5 GENE: GRX6; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS GLUTAREDOXIN, IRON-SULFUR CLUSTER, SACCHAROMYCES CEREVISIAE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ABDALLA,Y.-N.DAI,C.-B.CHI,W.CHENG,D.-D.CAO,K.ZHOU,W.ALI,Y.CHEN,C.- AUTHOR 2 Z.ZHOU REVDAT 2 08-NOV-23 5J3R 1 REMARK LINK REVDAT 1 19-OCT-16 5J3R 0 JRNL AUTH M.ABDALLA,Y.-N.DAI,C.-B.CHI,W.CHENG,D.-D.CAO,K.ZHOU,W.ALI, JRNL AUTH 2 Y.CHEN,C.-Z.ZHOU JRNL TITL CRYSTAL STRUCTURE OF YEAST MONOTHIOL GLUTAREDOXIN GRX6 IN JRNL TITL 2 COMPLEX WITH A GLUTATHIONE-COORDINATED [2FE-2S] CLUSTER JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 732 2016 JRNL REFN ESSN 2053-230X JRNL PMID 27710937 JRNL DOI 10.1107/S2053230X16013418 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 10375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 525 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 622 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 918 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.466 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 958 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1286 ; 1.368 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 113 ; 5.743 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ;25.429 ;25.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 179 ;13.324 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;24.248 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 140 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 707 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5J3R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10929 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3L4N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES SODIUM, 0.8 M POTASSIUM REMARK 280 SODIUM TARTRATE TETRAHYDRATE, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 287.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.88150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.32850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.32850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.32225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.32850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.32850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.44075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.32850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.32850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 121.32225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.32850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.32850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.44075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.88150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S1 FES A 301 LIES ON A SPECIAL POSITION. REMARK 375 S2 FES A 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 37 REMARK 465 GLU A 38 REMARK 465 GLU A 39 REMARK 465 THR A 40 REMARK 465 SER A 41 REMARK 465 LYS A 42 REMARK 465 ALA A 43 REMARK 465 PHE A 44 REMARK 465 SER A 45 REMARK 465 THR A 46 REMARK 465 ASN A 47 REMARK 465 MET A 48 REMARK 465 ASP A 49 REMARK 465 ASN A 50 REMARK 465 MET A 51 REMARK 465 ALA A 52 REMARK 465 GLY A 53 REMARK 465 GLY A 54 REMARK 465 SER A 55 REMARK 465 SER A 56 REMARK 465 ARG A 57 REMARK 465 GLU A 58 REMARK 465 TYR A 59 REMARK 465 ALA A 60 REMARK 465 ALA A 61 REMARK 465 MET A 62 REMARK 465 PRO A 63 REMARK 465 THR A 64 REMARK 465 SER A 65 REMARK 465 THR A 66 REMARK 465 THR A 67 REMARK 465 ASN A 68 REMARK 465 LYS A 69 REMARK 465 GLY A 70 REMARK 465 SER A 71 REMARK 465 SER A 72 REMARK 465 GLU A 73 REMARK 465 VAL A 74 REMARK 465 ASP A 75 REMARK 465 GLU A 76 REMARK 465 GLU A 77 REMARK 465 ILE A 78 REMARK 465 ASN A 79 REMARK 465 GLU A 80 REMARK 465 ILE A 81 REMARK 465 LYS A 82 REMARK 465 GLN A 83 REMARK 465 LYS A 84 REMARK 465 VAL A 85 REMARK 465 GLY A 86 REMARK 465 LEU A 87 REMARK 465 GLN A 88 REMARK 465 GLN A 89 REMARK 465 PRO A 90 REMARK 465 ILE A 91 REMARK 465 ALA A 92 REMARK 465 SER A 93 REMARK 465 VAL A 94 REMARK 465 ASP A 95 REMARK 465 ASP A 96 REMARK 465 SER A 97 REMARK 465 LEU A 98 REMARK 465 SER A 99 REMARK 465 ALA A 100 REMARK 465 ILE A 101 REMARK 465 LYS A 102 REMARK 465 ASN A 103 REMARK 465 ASP A 104 REMARK 465 LYS A 105 REMARK 465 GLY A 106 REMARK 465 SER A 107 REMARK 465 ARG A 108 REMARK 465 ILE A 109 REMARK 465 THR A 110 REMARK 465 LYS A 111 REMARK 465 GLU A 226 REMARK 465 LYS A 227 REMARK 465 PRO A 228 REMARK 465 SER A 229 REMARK 465 ASN A 230 REMARK 465 ASN A 231 REMARK 465 LEU A 232 REMARK 465 GLU A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 217 19.23 49.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 136 SG REMARK 620 2 FES A 301 S1 122.5 REMARK 620 3 FES A 301 S2 107.8 97.1 REMARK 620 4 GSH A 302 SG2 113.9 100.5 114.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 136 SG REMARK 620 2 FES A 301 S1 122.3 REMARK 620 3 FES A 301 S2 107.7 97.1 REMARK 620 4 GSH A 302 SG2 104.2 49.6 57.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH A 302 DBREF 5J3R A 37 231 UNP Q12438 GLRX6_YEAST 37 231 SEQADV 5J3R LEU A 232 UNP Q12438 EXPRESSION TAG SEQADV 5J3R GLU A 233 UNP Q12438 EXPRESSION TAG SEQADV 5J3R HIS A 234 UNP Q12438 EXPRESSION TAG SEQADV 5J3R HIS A 235 UNP Q12438 EXPRESSION TAG SEQADV 5J3R HIS A 236 UNP Q12438 EXPRESSION TAG SEQADV 5J3R HIS A 237 UNP Q12438 EXPRESSION TAG SEQADV 5J3R HIS A 238 UNP Q12438 EXPRESSION TAG SEQADV 5J3R HIS A 239 UNP Q12438 EXPRESSION TAG SEQRES 1 A 203 LYS GLU GLU THR SER LYS ALA PHE SER THR ASN MET ASP SEQRES 2 A 203 ASN MET ALA GLY GLY SER SER ARG GLU TYR ALA ALA MET SEQRES 3 A 203 PRO THR SER THR THR ASN LYS GLY SER SER GLU VAL ASP SEQRES 4 A 203 GLU GLU ILE ASN GLU ILE LYS GLN LYS VAL GLY LEU GLN SEQRES 5 A 203 GLN PRO ILE ALA SER VAL ASP ASP SER LEU SER ALA ILE SEQRES 6 A 203 LYS ASN ASP LYS GLY SER ARG ILE THR LYS ALA PHE ASN SEQRES 7 A 203 VAL GLN LYS GLU TYR SER LEU ILE LEU ASP LEU SER PRO SEQRES 8 A 203 ILE ILE ILE PHE SER LYS SER THR CYS SER TYR SER LYS SEQRES 9 A 203 GLY MET LYS GLU LEU LEU GLU ASN GLU TYR GLN PHE ILE SEQRES 10 A 203 PRO ASN TYR TYR ILE ILE GLU LEU ASP LYS HIS GLY HIS SEQRES 11 A 203 GLY GLU GLU LEU GLN GLU TYR ILE LYS LEU VAL THR GLY SEQRES 12 A 203 ARG GLY THR VAL PRO ASN LEU LEU VAL ASN GLY VAL SER SEQRES 13 A 203 ARG GLY GLY ASN GLU GLU ILE LYS LYS LEU HIS THR GLN SEQRES 14 A 203 GLY LYS LEU LEU GLU SER LEU GLN VAL TRP SER ASP GLY SEQRES 15 A 203 LYS PHE SER VAL GLU GLN ARG GLU LYS PRO SER ASN ASN SEQRES 16 A 203 LEU GLU HIS HIS HIS HIS HIS HIS HET FES A 301 4 HET GSH A 302 20 HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM GSH GLUTATHIONE FORMUL 2 FES FE2 S2 FORMUL 3 GSH C10 H17 N3 O6 S FORMUL 4 HOH *53(H2 O) HELIX 1 AA1 ASN A 114 SER A 126 1 13 HELIX 2 AA2 CYS A 136 GLU A 149 1 14 HELIX 3 AA3 HIS A 166 GLY A 179 1 14 HELIX 4 AA4 GLY A 195 GLN A 205 1 11 HELIX 5 AA5 LYS A 207 TRP A 215 1 9 SHEET 1 AA1 4 TYR A 157 GLU A 160 0 SHEET 2 AA1 4 ILE A 128 SER A 132 1 N ILE A 130 O ILE A 159 SHEET 3 AA1 4 ASN A 185 VAL A 188 -1 O LEU A 187 N ILE A 129 SHEET 4 AA1 4 VAL A 191 SER A 192 -1 O VAL A 191 N VAL A 188 SHEET 1 AA2 2 TYR A 150 ILE A 153 0 SHEET 2 AA2 2 SER A 221 GLN A 224 -1 O SER A 221 N ILE A 153 LINK SG CYS A 136 FE1 FES A 301 1555 1555 2.34 LINK SG CYS A 136 FE2 FES A 301 1555 7555 2.34 LINK FE1 FES A 301 SG2 GSH A 302 1555 1555 2.22 LINK FE2 FES A 301 SG2 GSH A 302 1555 7555 2.21 CISPEP 1 ILE A 153 PRO A 154 0 -4.35 CISPEP 2 VAL A 183 PRO A 184 0 -8.94 SITE 1 AC1 3 CYS A 136 TYR A 138 GSH A 302 SITE 1 AC2 13 LYS A 133 THR A 135 SER A 137 TYR A 138 SITE 2 AC2 13 GLN A 171 THR A 182 VAL A 183 GLY A 195 SITE 3 AC2 13 ASN A 196 GLU A 197 GLU A 198 FES A 301 SITE 4 AC2 13 HOH A 401 CRYST1 58.657 58.657 161.763 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017048 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006182 0.00000