HEADER HYDROLASE 31-MAR-16 5J3T TITLE CRYSTAL STRUCTURE OF S. POMBE DCP2:DCP1:EDC1 MRNA DECAPPING COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA-DECAPPING ENZYME SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MRNA DECAPPING COMPLEX SUBUNIT 2; COMPND 7 CHAIN: B; COMPND 8 EC: 3.6.1.62; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: EDC1; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: DCP1, SPBC3B9.21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNEAPG; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 13 ORGANISM_COMMON: FISSION YEAST; SOURCE 14 ORGANISM_TAXID: 4896; SOURCE 15 STRAIN: 972 / ATCC 24843; SOURCE 16 GENE: DCP2, SPAC19A8.12; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 19 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PNYC; SOURCE 22 MOL_ID: 3; SOURCE 23 SYNTHETIC: YES; SOURCE 24 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 25 ORGANISM_COMMON: FISSION YEAST; SOURCE 26 ORGANISM_TAXID: 4896 KEYWDS HYDROLASE, DECAPPING, MRNA DECAY, EVH1, NUDIX EXPDTA X-RAY DIFFRACTION AUTHOR E.VALKOV,S.MUTHUKUMAR,C.T.CHANG,S.JONAS,O.WEICHENRIEDER,E.IZAURRALDE REVDAT 4 10-JAN-24 5J3T 1 LINK REVDAT 3 15-JUN-16 5J3T 1 JRNL REVDAT 2 01-JUN-16 5J3T 1 JRNL REVDAT 1 18-MAY-16 5J3T 0 JRNL AUTH E.VALKOV,S.MUTHUKUMAR,C.T.CHANG,S.JONAS,O.WEICHENRIEDER, JRNL AUTH 2 E.IZAURRALDE JRNL TITL STRUCTURE OF THE DCP2-DCP1 MRNA-DECAPPING COMPLEX IN THE JRNL TITL 2 ACTIVATED CONFORMATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 574 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 27183195 JRNL DOI 10.1038/NSMB.3232 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 45762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2288 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.64 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.46 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3340 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2485 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3173 REMARK 3 BIN R VALUE (WORKING SET) : 0.2475 REMARK 3 BIN FREE R VALUE : 0.2669 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 167 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3134 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.81390 REMARK 3 B22 (A**2) : -0.09840 REMARK 3 B33 (A**2) : 0.91230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.62850 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.216 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.099 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.096 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.098 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.096 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3343 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4539 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1177 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 82 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 486 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3343 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 427 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4151 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.49 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.35 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 20.1023 22.0834 4.2633 REMARK 3 T TENSOR REMARK 3 T11: -0.0860 T22: -0.0831 REMARK 3 T33: -0.0106 T12: -0.0007 REMARK 3 T13: 0.0247 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.2324 L22: 2.3213 REMARK 3 L33: 0.9371 L12: -1.0110 REMARK 3 L13: -0.7164 L23: 0.2350 REMARK 3 S TENSOR REMARK 3 S11: -0.0563 S12: -0.1835 S13: -0.0511 REMARK 3 S21: -0.1454 S22: 0.0880 S23: -0.3118 REMARK 3 S31: 0.0429 S32: 0.0761 S33: -0.0317 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 10.9019 38.6792 27.6891 REMARK 3 T TENSOR REMARK 3 T11: -0.0231 T22: -0.0207 REMARK 3 T33: -0.0874 T12: 0.0112 REMARK 3 T13: -0.0063 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.4840 L22: 0.5329 REMARK 3 L33: 1.6901 L12: 0.2597 REMARK 3 L13: 0.9407 L23: 0.5175 REMARK 3 S TENSOR REMARK 3 S11: -0.1093 S12: -0.0666 S13: 0.0581 REMARK 3 S21: 0.1031 S22: 0.0282 S23: 0.0622 REMARK 3 S31: -0.1746 S32: -0.0511 S33: 0.0811 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 25.3558 23.1952 17.7057 REMARK 3 T TENSOR REMARK 3 T11: -0.1376 T22: 0.1359 REMARK 3 T33: -0.0987 T12: 0.0479 REMARK 3 T13: -0.1054 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.6681 L22: 3.7051 REMARK 3 L33: 0.9579 L12: 0.3587 REMARK 3 L13: -0.6731 L23: 0.2409 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: -0.0587 S13: -0.1089 REMARK 3 S21: 0.0779 S22: -0.0528 S23: -0.5756 REMARK 3 S31: 0.0489 S32: 0.5882 S33: 0.0309 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45926 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02800 REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.65300 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5J3Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.55 M SODIUM FORMATE, 0.1 M SODIUM REMARK 280 ACETATE (PH 4.8), VAPOR DIFFUSION, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.40450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.68550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.40450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.68550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 335 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 421 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 PHE B 207 REMARK 465 LYS B 208 REMARK 465 LYS B 209 REMARK 465 ASN B 210 REMARK 465 LYS B 211 REMARK 465 PRO B 212 REMARK 465 GLN B 213 REMARK 465 THR B 214 REMARK 465 MET B 215 REMARK 465 LYS B 216 REMARK 465 THR B 242 REMARK 465 SER C 180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 11 -59.22 71.09 REMARK 500 HIS A 32 70.45 39.20 REMARK 500 HIS A 32 70.45 45.49 REMARK 500 GLN A 60 4.51 -69.42 REMARK 500 ASP A 91 -118.09 57.30 REMARK 500 GLU A 99 -52.64 -16.19 REMARK 500 ASN A 100 42.83 -80.05 REMARK 500 ARG B 167 -96.20 62.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 92 OH REMARK 620 2 PHE B 185 O 93.6 REMARK 620 3 HOH B 429 O 85.1 126.9 REMARK 620 4 HOH B 439 O 84.8 152.3 80.6 REMARK 620 5 HOH B 463 O 151.8 95.3 68.2 99.1 REMARK 620 6 HOH B 513 O 99.0 75.5 157.2 77.5 109.2 REMARK 620 N 1 2 3 4 5 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J3Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S. POMBE DCP1:EDC1 MRNA DECAPPING COMPLEX REMARK 900 RELATED ID: 5J3Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S. POMBE DCP2:DCP1 MRNA DECAPPING COMPLEX DBREF 5J3T A 1 127 UNP Q9P805 DCP1_SCHPO 1 127 DBREF 5J3T B 1 242 UNP O13828 DCP2_SCHPO 1 242 DBREF 5J3T C 155 180 UNP Q10108 YAQ9_SCHPO 155 180 SEQADV 5J3T GLY A -2 UNP Q9P805 EXPRESSION TAG SEQADV 5J3T PRO A -1 UNP Q9P805 EXPRESSION TAG SEQADV 5J3T HIS A 0 UNP Q9P805 EXPRESSION TAG SEQRES 1 A 130 GLY PRO HIS MET GLU ASP GLU ASN ILE LEU ARG ASN ALA SEQRES 2 A 130 VAL ASN LEU GLN VAL LEU LYS PHE HIS TYR PRO GLU ILE SEQRES 3 A 130 GLU SER ILE ILE ASP ILE ALA SER HIS VAL ALA VAL TYR SEQRES 4 A 130 GLN PHE ASP VAL GLY SER GLN LYS TRP LEU LYS THR SER SEQRES 5 A 130 ILE GLU GLY THR PHE PHE LEU VAL LYS ASP GLN ARG ALA SEQRES 6 A 130 ARG VAL GLY TYR VAL ILE LEU ASN ARG ASN SER PRO GLU SEQRES 7 A 130 ASN LEU TYR LEU PHE ILE ASN HIS PRO SER ASN VAL HIS SEQRES 8 A 130 LEU VAL ASP ARG TYR LEU ILE HIS ARG THR GLU ASN GLN SEQRES 9 A 130 HIS VAL VAL GLY LEU TRP MET PHE ASP PRO ASN ASP MET SEQRES 10 A 130 SER ARG ILE PHE ASN ILE VAL LYS GLU SER LEU LEU ARG SEQRES 1 B 242 MET SER PHE THR ASN ALA THR PHE SER GLN VAL LEU ASP SEQRES 2 B 242 ASP LEU SER ALA ARG PHE ILE LEU ASN LEU PRO ALA GLU SEQRES 3 B 242 GLU GLN SER SER VAL GLU ARG LEU CYS PHE GLN ILE GLU SEQRES 4 B 242 GLN ALA HIS TRP PHE TYR GLU ASP PHE ILE ARG ALA GLN SEQRES 5 B 242 ASN ASP GLN LEU PRO SER LEU GLY LEU ARG VAL PHE SER SEQRES 6 B 242 ALA LYS LEU PHE ALA HIS CYS PRO LEU LEU TRP LYS TRP SEQRES 7 B 242 SER LYS VAL HIS GLU GLU ALA PHE ASP ASP PHE LEU ARG SEQRES 8 B 242 TYR LYS THR ARG ILE PRO VAL ARG GLY ALA ILE MET LEU SEQRES 9 B 242 ASP MET SER MET GLN GLN CYS VAL LEU VAL LYS GLY TRP SEQRES 10 B 242 LYS ALA SER SER GLY TRP GLY PHE PRO LYS GLY LYS ILE SEQRES 11 B 242 ASP LYS ASP GLU SER ASP VAL ASP CYS ALA ILE ARG GLU SEQRES 12 B 242 VAL TYR GLU GLU THR GLY PHE ASP CYS SER SER ARG ILE SEQRES 13 B 242 ASN PRO ASN GLU PHE ILE ASP MET THR ILE ARG GLY GLN SEQRES 14 B 242 ASN VAL ARG LEU TYR ILE ILE PRO GLY ILE SER LEU ASP SEQRES 15 B 242 THR ARG PHE GLU SER ARG THR ARG LYS GLU ILE SER LYS SEQRES 16 B 242 ILE GLU TRP HIS ASN LEU MET ASP LEU PRO THR PHE LYS SEQRES 17 B 242 LYS ASN LYS PRO GLN THR MET LYS ASN LYS PHE TYR MET SEQRES 18 B 242 VAL ILE PRO PHE LEU ALA PRO LEU LYS LYS TRP ILE LYS SEQRES 19 B 242 LYS ARG ASN ILE ALA ASN ASN THR SEQRES 1 C 26 SER ILE LEU TYR ALA GLY PRO THR PHE THR HIS SER PRO SEQRES 2 C 26 ALA ALA SER ASN LEU PRO ILE PRO THR PHE LEU HIS SER HET FMT A 201 3 HET FMT A 202 3 HET FMT B 301 3 HET FMT B 302 3 HET FMT B 303 3 HET MG B 304 1 HETNAM FMT FORMIC ACID HETNAM MG MAGNESIUM ION FORMUL 4 FMT 5(C H2 O2) FORMUL 9 MG MG 2+ FORMUL 10 HOH *215(H2 O) HELIX 1 1 ASP A 3 ASN A 9 1 7 HELIX 2 2 ASN A 12 HIS A 19 1 8 HELIX 3 4 PHE B 8 PHE B 19 1 12 HELIX 4 5 ALA B 25 GLN B 28 1 4 HELIX 5 6 VAL B 31 ASP B 47 1 17 HELIX 6 7 ILE B 49 GLN B 52 1 4 HELIX 7 8 LEU B 61 PHE B 69 1 9 HELIX 8 9 TRP B 76 VAL B 81 1 6 HELIX 9 10 GLU B 83 LEU B 90 1 8 HELIX 10 3 PRO A 111 SER A 124 1 14 HELIX 11 11 ASP B 136 THR B 148 1 13 HELIX 12 12 ILE B 223 ASN B 240 1 18 SHEET 1 1 1 ILE A 23 ASP A 39 0 SHEET 1 2 1 LYS A 44 ASP A 59 0 SHEET 1 3 1 VAL A 64 ASN A 70 0 SHEET 1 4 1 LEU A 77 PHE A 80 0 SHEET 1 5 1 VAL A 87 VAL A 90 0 SHEET 1 6 1 TYR A 93 THR A 98 0 SHEET 1 7 1 HIS A 102 MET A 108 0 SHEET 1 8 1 VAL B 98 MET B 103 0 SHEET 1 9 1 GLN B 110 LYS B 115 0 SHEET 1 10 1 LYS B 127 LYS B 129 0 SHEET 1 11 1 PHE B 161 ILE B 166 0 SHEET 1 12 1 GLN B 169 ILE B 176 0 SHEET 1 13 1 LYS B 195 ASN B 200 0 SHEET 1 14 1 ILE C 156 ALA C 159 0 LINK OH TYR B 92 MG MG B 304 1555 1555 2.43 LINK O PHE B 185 MG MG B 304 1555 4556 2.24 LINK MG MG B 304 O HOH B 429 1555 4546 2.31 LINK MG MG B 304 O HOH B 439 1555 4546 2.57 LINK MG MG B 304 O HOH B 463 1555 4546 2.52 LINK MG MG B 304 O HOH B 513 1555 4546 2.18 SITE 1 AC1 7 SER A 31 HIS A 32 THR A 53 ARG A 71 SITE 2 AC1 7 HOH A 319 ASN B 22 LEU B 23 SITE 1 AC2 8 PHE A 80 ILE A 81 ASN A 82 HIS A 83 SITE 2 AC2 8 ASN A 86 HIS A 96 ARG A 97 ASN A 119 SITE 1 AC3 4 GLY B 124 PHE B 125 LYS B 127 MET B 221 SITE 1 AC4 4 ARG A 92 ASN B 157 GLU B 160 HOH B 486 SITE 1 AC5 7 ARG B 91 TYR B 92 GLN B 109 LYS B 195 SITE 2 AC5 7 ILE B 196 GLU B 197 HOH B 439 SITE 1 AC6 6 TYR B 92 PHE B 185 HOH B 429 HOH B 439 SITE 2 AC6 6 HOH B 463 HOH B 513 CRYST1 98.809 41.371 93.718 90.00 114.04 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010121 0.000000 0.004514 0.00000 SCALE2 0.000000 0.024172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011684 0.00000