HEADER HYDROLASE/INHIBITOR 31-MAR-16 5J40 TITLE THE X-RAY STRUCTURE OF JCV HELICASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LARGE T ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 261-628; COMPND 5 SYNONYM: LT-AG; COMPND 6 EC: 3.6.4.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JC POLYOMAVIRUS; SOURCE 3 ORGANISM_COMMON: JCPYV; SOURCE 4 ORGANISM_TAXID: 10632; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28B.1 KEYWDS HELICASE, HEXAMER, ZN, ATP, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.TER HAAR REVDAT 3 06-MAR-24 5J40 1 JRNL REMARK REVDAT 2 24-AUG-16 5J40 1 JRNL REVDAT 1 20-JUL-16 5J40 0 JRNL AUTH D.BONAFOUX,S.NANTHAKUMAR,U.K.BANDARAGE,C.MEMMOTT,D.LOWE, JRNL AUTH 2 A.M.ARONOV,G.R.BHISETTI,K.C.BONANNO,J.COLL,J.LEEMAN, JRNL AUTH 3 C.A.LEPRE,F.LU,E.PEROLA,R.RIJNBRAND,W.P.TAYLOR,D.WILSON, JRNL AUTH 4 Y.ZHOU,J.ZWAHLEN,E.TER HAAR JRNL TITL FRAGMENT-BASED DISCOVERY OF DUAL JC VIRUS AND BK VIRUS JRNL TITL 2 HELICASE INHIBITORS. JRNL REF J.MED.CHEM. V. 59 7138 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27385654 JRNL DOI 10.1021/ACS.JMEDCHEM.6B00486 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 22756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1182 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.34 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2958 REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2798 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.41 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 160 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2841 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.16740 REMARK 3 B22 (A**2) : 3.16740 REMARK 3 B33 (A**2) : -6.33490 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.225 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.193 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.210 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.189 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2935 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3984 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1034 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 72 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 418 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2935 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 372 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3571 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.93 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.49 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|701 - A|701 A|266 - A|356 } REMARK 3 ORIGIN FOR THE GROUP (A): -23.8626 7.2237 -13.2047 REMARK 3 T TENSOR REMARK 3 T11: -0.0932 T22: -0.0817 REMARK 3 T33: 0.0388 T12: -0.0017 REMARK 3 T13: 0.0055 T23: 0.0731 REMARK 3 L TENSOR REMARK 3 L11: 2.3756 L22: 3.7905 REMARK 3 L33: 1.9320 L12: 1.4718 REMARK 3 L13: -0.5944 L23: 1.2575 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: 0.2252 S13: 0.0988 REMARK 3 S21: -0.1540 S22: 0.0266 S23: 0.2707 REMARK 3 S31: 0.0409 S32: -0.2316 S33: -0.0518 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|357 - A|512 A|518 - A|628 } REMARK 3 ORIGIN FOR THE GROUP (A): -31.6083 19.1621 15.4486 REMARK 3 T TENSOR REMARK 3 T11: -0.0835 T22: -0.1435 REMARK 3 T33: -0.0435 T12: -0.0126 REMARK 3 T13: 0.0606 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 2.9199 L22: 1.3581 REMARK 3 L33: 1.2479 L12: 0.4762 REMARK 3 L13: 0.2280 L23: -0.0289 REMARK 3 S TENSOR REMARK 3 S11: 0.2423 S12: -0.0589 S13: -0.0697 REMARK 3 S21: 0.0374 S22: -0.1265 S23: -0.2346 REMARK 3 S31: -0.1029 S32: 0.0656 S33: -0.1158 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999971 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22759 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 38.972 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAMERIC BUTTONS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-30% PEG400, 0.1 M LISO4, 0.1M HEPES REMARK 280 (PH 7.0), 0.2 M NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 92230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -172.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 257 REMARK 465 SER A 258 REMARK 465 HIS A 259 REMARK 465 MET A 260 REMARK 465 GLU A 261 REMARK 465 GLU A 262 REMARK 465 PRO A 263 REMARK 465 GLU A 264 REMARK 465 GLU A 265 REMARK 465 LYS A 513 REMARK 465 HIS A 514 REMARK 465 GLN A 515 REMARK 465 ASN A 516 REMARK 465 LYS A 517 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 266 OG1 CG2 REMARK 470 HIS A 355 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 536 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 314 -65.90 -98.83 REMARK 500 LYS A 419 -2.48 70.41 REMARK 500 ASP A 467 14.17 59.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1076 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A1077 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1078 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A1079 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1080 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A1081 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH A1082 DISTANCE = 7.82 ANGSTROMS REMARK 525 HOH A1083 DISTANCE = 8.58 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 8.98 ANGSTROMS REMARK 525 HOH A1085 DISTANCE = 9.32 ANGSTROMS REMARK 525 HOH A1086 DISTANCE = 10.56 ANGSTROMS REMARK 525 HOH A1087 DISTANCE = 14.17 ANGSTROMS REMARK 525 HOH A1088 DISTANCE = 14.53 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 303 SG REMARK 620 2 CYS A 306 SG 121.4 REMARK 620 3 HIS A 314 NE2 105.7 116.4 REMARK 620 4 HIS A 318 ND1 108.4 106.3 95.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J47 RELATED DB: PDB REMARK 900 RELATED ID: 5J4V RELATED DB: PDB REMARK 900 RELATED ID: 5J4Y RELATED DB: PDB DBREF 5J40 A 261 628 UNP P03072 LT_POVJC 261 628 SEQADV 5J40 GLY A 257 UNP P03072 EXPRESSION TAG SEQADV 5J40 SER A 258 UNP P03072 EXPRESSION TAG SEQADV 5J40 HIS A 259 UNP P03072 EXPRESSION TAG SEQADV 5J40 MET A 260 UNP P03072 EXPRESSION TAG SEQADV 5J40 ASP A 280 UNP P03072 GLU 280 ENGINEERED MUTATION SEQADV 5J40 ASN A 295 UNP P03072 ASP 295 ENGINEERED MUTATION SEQADV 5J40 ALA A 299 UNP P03072 ASN 299 ENGINEERED MUTATION SEQADV 5J40 ALA A 301 UNP P03072 GLN 301 ENGINEERED MUTATION SEQADV 5J40 ALA A 302 UNP P03072 GLN 302 ENGINEERED MUTATION SEQADV 5J40 ALA A 304 UNP P03072 LYS 304 ENGINEERED MUTATION SEQADV 5J40 ALA A 305 UNP P03072 LYS 305 ENGINEERED MUTATION SEQADV 5J40 ALA A 307 UNP P03072 GLU 307 ENGINEERED MUTATION SEQADV 5J40 ALA A 308 UNP P03072 LYS 308 ENGINEERED MUTATION SEQADV 5J40 ALA A 309 UNP P03072 LYS 309 ENGINEERED MUTATION SEQADV 5J40 LEU A 354 UNP P03072 ILE 354 ENGINEERED MUTATION SEQADV 5J40 GLU A 408 UNP P03072 ASP 408 ENGINEERED MUTATION SEQADV 5J40 ALA A 624 UNP P03072 ARG 624 ENGINEERED MUTATION SEQRES 1 A 372 GLY SER HIS MET GLU GLU PRO GLU GLU THR LYS GLN VAL SEQRES 2 A 372 SER TRP LYS LEU VAL THR GLN TYR ALA LEU ASP THR LYS SEQRES 3 A 372 CYS GLU ASP VAL PHE LEU LEU MET GLY MET TYR LEU ASN SEQRES 4 A 372 PHE GLN GLU ALA PRO ALA ALA CYS ALA ALA CYS ALA ALA SEQRES 5 A 372 ALA ASP GLN PRO ASN HIS PHE ASN HIS HIS GLU LYS HIS SEQRES 6 A 372 TYR TYR ASN ALA GLN ILE PHE ALA ASP SER LYS ASN GLN SEQRES 7 A 372 LYS SER ILE CYS GLN GLN ALA VAL ASP THR VAL ALA ALA SEQRES 8 A 372 LYS GLN ARG VAL ASP SER LEU HIS MET THR ARG GLU GLU SEQRES 9 A 372 MET LEU VAL GLU ARG PHE ASN PHE LEU LEU ASP LYS MET SEQRES 10 A 372 ASP LEU ILE PHE GLY ALA HIS GLY ASN ALA VAL LEU GLU SEQRES 11 A 372 GLN TYR MET ALA GLY VAL ALA TRP ILE HIS CYS LEU LEU SEQRES 12 A 372 PRO GLN MET ASP THR VAL ILE TYR GLU PHE LEU LYS CYS SEQRES 13 A 372 ILE VAL LEU ASN ILE PRO LYS LYS ARG TYR TRP LEU PHE SEQRES 14 A 372 LYS GLY PRO ILE ASP SER GLY LYS THR THR LEU ALA ALA SEQRES 15 A 372 ALA LEU LEU ASP LEU CYS GLY GLY LYS SER LEU ASN VAL SEQRES 16 A 372 ASN MET PRO LEU GLU ARG LEU ASN PHE GLU LEU GLY VAL SEQRES 17 A 372 GLY ILE ASP GLN PHE MET VAL VAL PHE GLU ASP VAL LYS SEQRES 18 A 372 GLY THR GLY ALA GLU SER ARG ASP LEU PRO SER GLY HIS SEQRES 19 A 372 GLY ILE SER ASN LEU ASP CYS LEU ARG ASP TYR LEU ASP SEQRES 20 A 372 GLY SER VAL LYS VAL ASN LEU GLU ARG LYS HIS GLN ASN SEQRES 21 A 372 LYS ARG THR GLN VAL PHE PRO PRO GLY ILE VAL THR MET SEQRES 22 A 372 ASN GLU TYR SER VAL PRO ARG THR LEU GLN ALA ARG PHE SEQRES 23 A 372 VAL ARG GLN ILE ASP PHE ARG PRO LYS ALA TYR LEU ARG SEQRES 24 A 372 LYS SER LEU SER CYS SER GLU TYR LEU LEU GLU LYS ARG SEQRES 25 A 372 ILE LEU GLN SER GLY MET THR LEU LEU LEU LEU LEU ILE SEQRES 26 A 372 TRP PHE ARG PRO VAL ALA ASP PHE ALA ALA ALA ILE HIS SEQRES 27 A 372 GLU ARG ILE VAL GLN TRP LYS GLU ARG LEU ASP LEU GLU SEQRES 28 A 372 ILE SER MET TYR THR PHE SER THR MET LYS ALA ASN VAL SEQRES 29 A 372 GLY MET GLY ALA PRO ILE LEU ASP HET ZN A 701 1 HET MES A 702 24 HET SO4 A 703 5 HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM SO4 SULFATE ION FORMUL 2 ZN ZN 2+ FORMUL 3 MES C6 H13 N O4 S FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *288(H2 O) HELIX 1 AA1 SER A 270 LYS A 282 1 13 HELIX 2 AA2 ASP A 285 ASN A 295 1 11 HELIX 3 AA3 ALA A 299 ALA A 302 5 4 HELIX 4 AA4 CYS A 303 ALA A 309 1 7 HELIX 5 AA5 GLN A 311 ASN A 316 1 6 HELIX 6 AA6 HIS A 317 ASP A 330 1 14 HELIX 7 AA7 ASN A 333 MET A 356 1 24 HELIX 8 AA8 THR A 357 PHE A 377 1 21 HELIX 9 AA9 VAL A 384 CYS A 397 1 14 HELIX 10 AB1 GLN A 401 ASN A 416 1 16 HELIX 11 AB2 GLY A 432 GLY A 445 1 14 HELIX 12 AB3 PRO A 454 GLY A 463 1 10 HELIX 13 AB4 VAL A 464 ILE A 466 5 3 HELIX 14 AB5 ALA A 481 ASP A 485 5 5 HELIX 15 AB6 HIS A 490 CYS A 497 1 8 HELIX 16 AB7 LEU A 498 GLY A 504 1 7 HELIX 17 AB8 PRO A 535 ALA A 540 1 6 HELIX 18 AB9 LYS A 551 CYS A 560 1 10 HELIX 19 AC1 GLU A 562 LYS A 567 1 6 HELIX 20 AC2 SER A 572 ARG A 584 1 13 HELIX 21 AC3 PRO A 585 PHE A 589 5 5 HELIX 22 AC4 ALA A 590 ALA A 592 5 3 HELIX 23 AC5 ILE A 593 ILE A 608 1 16 HELIX 24 AC6 SER A 609 GLY A 623 1 15 SHEET 1 AA1 5 GLY A 446 LEU A 449 0 SHEET 2 AA1 5 MET A 470 VAL A 476 1 O VAL A 472 N LEU A 449 SHEET 3 AA1 5 GLY A 525 MET A 529 1 O THR A 528 N PHE A 473 SHEET 4 AA1 5 TYR A 422 LYS A 426 1 N PHE A 425 O VAL A 527 SHEET 5 AA1 5 ARG A 544 ASP A 547 1 O ILE A 546 N LYS A 426 SHEET 1 AA2 2 VAL A 508 ASN A 509 0 SHEET 2 AA2 2 THR A 519 GLN A 520 -1 O GLN A 520 N VAL A 508 LINK SG CYS A 303 ZN ZN A 701 1555 1555 2.35 LINK SG CYS A 306 ZN ZN A 701 1555 1555 2.21 LINK NE2 HIS A 314 ZN ZN A 701 1555 1555 2.03 LINK ND1 HIS A 318 ZN ZN A 701 1555 1555 1.93 SITE 1 AC1 4 CYS A 303 CYS A 306 HIS A 314 HIS A 318 SITE 1 AC2 7 ILE A 581 TRP A 582 LYS A 601 ASP A 605 SITE 2 AC2 7 SER A 609 MET A 610 HOH A 901 SITE 1 AC3 8 ASP A 430 SER A 431 GLY A 432 LYS A 433 SITE 2 AC3 8 THR A 434 THR A 435 HOH A 823 HOH A 854 CRYST1 109.910 109.910 67.890 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009098 0.005253 0.000000 0.00000 SCALE2 0.000000 0.010506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014730 0.00000