HEADER HYDROLASE 31-MAR-16 5J46 TITLE CRYSTAL STRUCTURE OF A PEPTIDE DEFORMYLASE FROM BURKHOLDERIA TITLE 2 MULTIVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE DEFORMYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PDF,POLYPEPTIDE DEFORMYLASE; COMPND 5 EC: 3.5.1.88; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA MULTIVORANS (STRAIN ATCC 17616 / SOURCE 3 249); SOURCE 4 ORGANISM_TAXID: 395019; SOURCE 5 STRAIN: ATCC 17616 / 249; SOURCE 6 GENE: DEF, BMULJ_00106; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BUMUA.00078.A.B1 KEYWDS SSGCID, PEPTIDE DEFORMYLASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 2 GENOMICS CENTER FOR INFECTIOUS DISEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 27-SEP-23 5J46 1 REMARK REVDAT 1 13-APR-16 5J46 0 JRNL AUTH K.T.POTTS,J.ABENDROTH,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A PEPTIDE DEFORMYLASE FROM BURKHOLDERIA JRNL TITL 2 MULTIVORANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 12944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.210 REMARK 3 FREE R VALUE TEST SET COUNT : 1322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9265 - 4.0531 0.99 1373 139 0.1447 0.1650 REMARK 3 2 4.0531 - 3.2183 0.99 1343 118 0.1559 0.1845 REMARK 3 3 3.2183 - 2.8118 0.99 1290 156 0.1947 0.2045 REMARK 3 4 2.8118 - 2.5549 0.99 1274 150 0.1913 0.2366 REMARK 3 5 2.5549 - 2.3719 1.00 1239 168 0.1993 0.2493 REMARK 3 6 2.3719 - 2.2321 1.00 1263 158 0.1903 0.2199 REMARK 3 7 2.2321 - 2.1203 1.00 1271 163 0.1947 0.2620 REMARK 3 8 2.1203 - 2.0280 1.00 1291 123 0.2132 0.2404 REMARK 3 9 2.0280 - 1.9500 1.00 1278 147 0.2229 0.2672 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1349 REMARK 3 ANGLE : 0.841 1825 REMARK 3 CHIRALITY : 0.053 210 REMARK 3 PLANARITY : 0.005 238 REMARK 3 DIHEDRAL : 14.523 838 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5356 12.1053 24.9452 REMARK 3 T TENSOR REMARK 3 T11: 0.3802 T22: 0.3341 REMARK 3 T33: 0.3410 T12: -0.0043 REMARK 3 T13: -0.0275 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 4.0193 L22: 3.3081 REMARK 3 L33: 4.8565 L12: -1.4075 REMARK 3 L13: -0.0578 L23: 1.3413 REMARK 3 S TENSOR REMARK 3 S11: 0.2072 S12: -0.5354 S13: -0.2654 REMARK 3 S21: 0.5152 S22: -0.3490 S23: 0.0513 REMARK 3 S31: 0.6581 S32: 0.3759 S33: 0.2682 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4949 9.0266 15.4847 REMARK 3 T TENSOR REMARK 3 T11: 0.4004 T22: 0.2324 REMARK 3 T33: 0.2627 T12: -0.0766 REMARK 3 T13: 0.0212 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 4.2475 L22: 3.9574 REMARK 3 L33: 4.2083 L12: 0.4506 REMARK 3 L13: 1.1484 L23: 0.6527 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.3552 S13: -0.4669 REMARK 3 S21: -0.1779 S22: 0.0457 S23: 0.1442 REMARK 3 S31: 0.9637 S32: -0.0893 S33: -0.0281 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1484 17.4635 3.1053 REMARK 3 T TENSOR REMARK 3 T11: 0.5260 T22: 0.5851 REMARK 3 T33: 0.2838 T12: -0.1348 REMARK 3 T13: -0.1068 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.8259 L22: 6.2789 REMARK 3 L33: 0.7037 L12: -0.3184 REMARK 3 L13: -0.4505 L23: -1.6198 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: 0.8601 S13: 0.2131 REMARK 3 S21: -1.3372 S22: 0.3461 S23: 0.3238 REMARK 3 S31: 0.2947 S32: -0.3518 S33: -0.2852 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0068 27.9968 16.5699 REMARK 3 T TENSOR REMARK 3 T11: 0.3664 T22: 0.2758 REMARK 3 T33: 0.3370 T12: -0.0158 REMARK 3 T13: -0.0686 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 4.5779 L22: 5.4950 REMARK 3 L33: 4.9511 L12: -0.5122 REMARK 3 L13: 2.8825 L23: -1.5428 REMARK 3 S TENSOR REMARK 3 S11: -0.4362 S12: 0.1925 S13: 0.5944 REMARK 3 S21: -0.0287 S22: -0.0232 S23: 0.5692 REMARK 3 S31: -0.9918 S32: -0.5830 S33: 0.3833 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2244 10.3326 3.4445 REMARK 3 T TENSOR REMARK 3 T11: 0.6418 T22: 0.6349 REMARK 3 T33: 0.4518 T12: -0.2174 REMARK 3 T13: -0.1136 T23: -0.1127 REMARK 3 L TENSOR REMARK 3 L11: 2.8972 L22: 5.1104 REMARK 3 L33: 0.5513 L12: -0.4385 REMARK 3 L13: 0.6243 L23: -0.5938 REMARK 3 S TENSOR REMARK 3 S11: 0.2497 S12: 0.1446 S13: -0.5652 REMARK 3 S21: -0.2900 S22: -0.2685 S23: 1.1773 REMARK 3 S31: 0.6107 S32: -1.0889 S33: 0.0779 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7443 18.1899 8.6145 REMARK 3 T TENSOR REMARK 3 T11: 0.3220 T22: 0.4229 REMARK 3 T33: 0.2537 T12: -0.1286 REMARK 3 T13: -0.0474 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.5954 L22: 5.4326 REMARK 3 L33: 5.9428 L12: -0.1308 REMARK 3 L13: 1.6450 L23: 2.5436 REMARK 3 S TENSOR REMARK 3 S11: -0.2615 S12: 0.6787 S13: 0.0632 REMARK 3 S21: -0.6339 S22: 0.0164 S23: 0.4479 REMARK 3 S31: 0.1638 S32: -0.4439 S33: 0.2882 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6553 27.0076 13.7826 REMARK 3 T TENSOR REMARK 3 T11: 0.3939 T22: 0.3713 REMARK 3 T33: 0.2496 T12: -0.1420 REMARK 3 T13: 0.0036 T23: 0.0922 REMARK 3 L TENSOR REMARK 3 L11: 3.8827 L22: 6.5356 REMARK 3 L33: 1.0705 L12: 0.9428 REMARK 3 L13: 0.7369 L23: -2.2446 REMARK 3 S TENSOR REMARK 3 S11: -0.4325 S12: 0.7152 S13: 0.2560 REMARK 3 S21: -0.9540 S22: 0.2437 S23: -0.3571 REMARK 3 S31: -1.0606 S32: 0.5525 S33: 0.0743 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5437 27.7451 27.6915 REMARK 3 T TENSOR REMARK 3 T11: 0.3668 T22: 0.2067 REMARK 3 T33: 0.3463 T12: -0.1190 REMARK 3 T13: -0.0437 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 2.9593 L22: 5.2948 REMARK 3 L33: 4.9115 L12: 2.5593 REMARK 3 L13: -3.6679 L23: -4.2689 REMARK 3 S TENSOR REMARK 3 S11: -0.2557 S12: -0.2349 S13: 0.1550 REMARK 3 S21: -0.1619 S22: -0.1219 S23: -0.4037 REMARK 3 S31: -0.4928 S32: 0.7651 S33: 0.3915 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12954 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2W3T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUMUA.00078.A.B1.PS37840 AT 14MG/ML, REMARK 280 MIXED 1:1 WITH MCSG1(B5), 0.2M MGCL2, 0.1M TRIS HCL PH 8.5, 25% REMARK 280 (W/V) PEG 3350, CRYO PROTECTED WITH 20% EG IN 2 STEPS, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.93500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.93500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.86000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.53500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.86000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.53500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.93500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.86000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.53500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.93500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.86000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 34.53500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 385 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 HIS A 6 REMARK 465 ARG A 7 REMARK 465 PHE A 8 REMARK 465 THR A 9 REMARK 465 GLU A 10 REMARK 465 TYR A 11 REMARK 465 ARG A 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 THR A 14 OG1 CG2 REMARK 470 MET A 15 CG SD CE REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 ASN A 82 CG OD1 ND2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 LYS A 175 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 355 O HOH A 374 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 106 SG REMARK 620 2 HIS A 148 NE2 113.7 REMARK 620 3 HIS A 152 NE2 100.4 101.7 REMARK 620 4 HOH A 302 O 123.7 116.0 94.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUMUA.00078.A RELATED DB: TARGETTRACK DBREF1 5J46 A 15 181 UNP A0A0H3KB98_BURM1 DBREF2 5J46 A A0A0H3KB98 1 167 SEQADV 5J46 MET A -7 UNP A0A0H3KB9 INITIATING METHIONINE SEQADV 5J46 ALA A -6 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 HIS A -5 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 HIS A -4 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 HIS A -3 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 HIS A -2 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 HIS A -1 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 HIS A 0 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 MET A 1 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 ALA A 2 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 ASN A 3 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 ALA A 4 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 ALA A 5 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 HIS A 6 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 ARG A 7 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 PHE A 8 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 THR A 9 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 GLU A 10 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 TYR A 11 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 ARG A 12 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 LYS A 13 UNP A0A0H3KB9 EXPRESSION TAG SEQADV 5J46 THR A 14 UNP A0A0H3KB9 EXPRESSION TAG SEQRES 1 A 189 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ASN ALA ALA SEQRES 2 A 189 HIS ARG PHE THR GLU TYR ARG LYS THR MET ALA LEU LEU SEQRES 3 A 189 ASN ILE LEU HIS TYR PRO ASP LYS ARG LEU HIS LYS VAL SEQRES 4 A 189 ALA LYS PRO VAL ASP LYS VAL ASP ASP ARG ILE ARG LYS SEQRES 5 A 189 LEU VAL ALA ASP MET ALA GLU THR MET TYR ALA ALA PRO SEQRES 6 A 189 GLY ILE GLY LEU ALA ALA THR GLN VAL ASP VAL HIS GLU SEQRES 7 A 189 ARG VAL ILE VAL ILE ASP VAL SER GLU ASP LYS ASN GLU SEQRES 8 A 189 LEU ARG ALA PHE ILE ASN PRO GLU ILE ILE TRP SER SER SEQRES 9 A 189 ASP GLY LYS GLN VAL TYR GLU GLU GLY CYS LEU SER VAL SEQRES 10 A 189 PRO GLY ILE TYR ASP GLU VAL GLU ARG PRO ASP ARG VAL SEQRES 11 A 189 ARG VAL ARG ALA LEU ASN GLU GLN GLY GLU THR PHE GLU SEQRES 12 A 189 LEU ASP CYS GLU GLY LEU LEU ALA VAL CYS ILE GLN HIS SEQRES 13 A 189 GLU MET ASP HIS LEU MET GLY ARG VAL PHE VAL GLU TYR SEQRES 14 A 189 LEU SER PRO LEU LYS GLN SER ARG ILE LYS THR LYS MET SEQRES 15 A 189 LYS LYS LEU GLU ARG ALA MET HET ZN A 200 1 HET EDO A 201 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *85(H2 O) HELIX 1 AA1 ASP A 25 LYS A 30 5 6 HELIX 2 AA2 ASP A 39 ALA A 56 1 18 HELIX 3 AA3 THR A 64 ASP A 67 5 4 HELIX 4 AA4 GLY A 140 MET A 154 1 15 HELIX 5 AA5 VAL A 157 LEU A 162 5 6 HELIX 6 AA6 SER A 163 GLU A 178 1 16 SHEET 1 AA1 5 GLY A 60 ALA A 62 0 SHEET 2 AA1 5 VAL A 72 ILE A 75 -1 O VAL A 74 N LEU A 61 SHEET 3 AA1 5 ARG A 85 SER A 95 -1 O PHE A 87 N ILE A 73 SHEET 4 AA1 5 ARG A 121 LEU A 127 -1 O LEU A 127 N ILE A 88 SHEET 5 AA1 5 THR A 133 GLU A 139 -1 O CYS A 138 N VAL A 122 SHEET 1 AA2 2 LYS A 99 GLU A 104 0 SHEET 2 AA2 2 ASP A 114 PRO A 119 -1 O ARG A 118 N GLN A 100 LINK SG CYS A 106 ZN ZN A 200 1555 1555 2.31 LINK NE2 HIS A 148 ZN ZN A 200 1555 1555 2.13 LINK NE2 HIS A 152 ZN ZN A 200 1555 1555 2.07 LINK ZN ZN A 200 O HOH A 302 1555 1555 2.15 CISPEP 1 TYR A 23 PRO A 24 0 5.58 CISPEP 2 ALA A 56 PRO A 57 0 -9.56 SITE 1 AC1 6 GLN A 65 CYS A 106 HIS A 148 HIS A 152 SITE 2 AC1 6 MET A 181 HOH A 302 SITE 1 AC2 2 TYR A 54 ARG A 169 CRYST1 41.720 69.070 119.870 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023969 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008342 0.00000