HEADER HYDROLASE/IMMUNE SYSTEM 01-APR-16 5J56 TITLE RTA-V1C7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RICIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 40-294; COMPND 5 EC: 3.2.2.22; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: VHH SINGLE CHAIN ANTIBODY V1C7; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICINUS COMMUNIS; SOURCE 3 ORGANISM_COMMON: CASTOR BEAN; SOURCE 4 ORGANISM_TAXID: 3988; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 9 ORGANISM_COMMON: ALPACA; SOURCE 10 ORGANISM_TAXID: 30538; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RICIN, RTA, SINGLE CHAIN ANTIBODY (VHH), HYDROLASE-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RUDOLPH REVDAT 7 06-MAR-24 5J56 1 REMARK REVDAT 6 11-DEC-19 5J56 1 REMARK REVDAT 5 13-SEP-17 5J56 1 REMARK REVDAT 4 12-APR-17 5J56 1 COMPND SOURCE REVDAT 3 01-FEB-17 5J56 1 JRNL REVDAT 2 21-DEC-16 5J56 1 JRNL REVDAT 1 07-DEC-16 5J56 0 JRNL AUTH M.J.RUDOLPH,D.J.VANCE,M.S.CASSIDY,Y.RONG,N.J.MANTIS JRNL TITL STRUCTURAL ANALYSIS OF SINGLE DOMAIN ANTIBODIES BOUND TO A JRNL TITL 2 SECOND NEUTRALIZING HOT SPOT ON RICIN TOXIN'S ENZYMATIC JRNL TITL 3 SUBUNIT. JRNL REF J. BIOL. CHEM. V. 292 872 2017 JRNL REFN ESSN 1083-351X JRNL PMID 27903650 JRNL DOI 10.1074/JBC.M116.758102 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 49537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7482 - 4.6271 1.00 3009 152 0.1414 0.1541 REMARK 3 2 4.6271 - 3.6731 1.00 2882 152 0.1397 0.1955 REMARK 3 3 3.6731 - 3.2089 1.00 2816 132 0.1838 0.2071 REMARK 3 4 3.2089 - 2.9155 1.00 2832 114 0.1960 0.2552 REMARK 3 5 2.9155 - 2.7065 1.00 2758 162 0.1848 0.2019 REMARK 3 6 2.7065 - 2.5470 1.00 2793 122 0.1913 0.2367 REMARK 3 7 2.5470 - 2.4194 1.00 2783 123 0.1899 0.2674 REMARK 3 8 2.4194 - 2.3141 1.00 2728 133 0.1792 0.2313 REMARK 3 9 2.3141 - 2.2250 1.00 2751 143 0.1894 0.2334 REMARK 3 10 2.2250 - 2.1482 1.00 2747 148 0.1900 0.2276 REMARK 3 11 2.1482 - 2.0811 1.00 2742 130 0.1985 0.2727 REMARK 3 12 2.0811 - 2.0216 1.00 2709 157 0.2007 0.2720 REMARK 3 13 2.0216 - 1.9684 1.00 2736 125 0.2082 0.1997 REMARK 3 14 1.9684 - 1.9203 1.00 2775 135 0.2183 0.2588 REMARK 3 15 1.9203 - 1.8767 1.00 2704 157 0.2423 0.2489 REMARK 3 16 1.8767 - 1.8367 1.00 2718 146 0.2707 0.2745 REMARK 3 17 1.8367 - 1.8000 1.00 2677 146 0.3001 0.3440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.40 REMARK 3 SHRINKAGE RADIUS : 1.20 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 3089 REMARK 3 ANGLE : 1.609 4188 REMARK 3 CHIRALITY : 0.089 457 REMARK 3 PLANARITY : 0.009 551 REMARK 3 DIHEDRAL : 14.585 1114 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 5:17) REMARK 3 ORIGIN FOR THE GROUP (A): 38.9267 18.1391 10.0733 REMARK 3 T TENSOR REMARK 3 T11: 0.3263 T22: 0.4677 REMARK 3 T33: 0.4712 T12: -0.0653 REMARK 3 T13: -0.0319 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 10.2444 L22: 2.2849 REMARK 3 L33: 8.7621 L12: -8.5169 REMARK 3 L13: -5.8616 L23: 6.6010 REMARK 3 S TENSOR REMARK 3 S11: 0.1144 S12: -0.3078 S13: 0.9825 REMARK 3 S21: -0.3457 S22: 0.5277 S23: -1.1671 REMARK 3 S31: -0.6254 S32: 1.0090 S33: -0.5007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 18:32) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3562 11.3139 16.3027 REMARK 3 T TENSOR REMARK 3 T11: 0.2974 T22: 0.4256 REMARK 3 T33: 0.3339 T12: -0.0032 REMARK 3 T13: -0.1044 T23: 0.0534 REMARK 3 L TENSOR REMARK 3 L11: 9.8341 L22: 7.7378 REMARK 3 L33: 9.1798 L12: -2.7517 REMARK 3 L13: -6.4568 L23: 7.4424 REMARK 3 S TENSOR REMARK 3 S11: -0.2106 S12: -0.9617 S13: 0.0269 REMARK 3 S21: 1.0234 S22: 0.4137 S23: -0.6586 REMARK 3 S31: 0.3757 S32: 1.0806 S33: -0.1153 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 33:56) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9742 20.9624 27.5419 REMARK 3 T TENSOR REMARK 3 T11: 0.6944 T22: 0.4785 REMARK 3 T33: 0.4102 T12: -0.0156 REMARK 3 T13: -0.0627 T23: -0.1218 REMARK 3 L TENSOR REMARK 3 L11: 4.5631 L22: 6.0299 REMARK 3 L33: 8.5644 L12: 3.2521 REMARK 3 L13: -0.9381 L23: -4.9649 REMARK 3 S TENSOR REMARK 3 S11: 0.3164 S12: -0.8029 S13: 0.2071 REMARK 3 S21: 1.5673 S22: -0.2233 S23: -0.1183 REMARK 3 S31: -0.4030 S32: 0.4561 S33: -0.0802 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 57:97) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0231 23.0889 7.7568 REMARK 3 T TENSOR REMARK 3 T11: 0.2194 T22: 0.2482 REMARK 3 T33: 0.2836 T12: -0.0408 REMARK 3 T13: -0.0382 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 3.4868 L22: 2.9485 REMARK 3 L33: 8.7936 L12: -1.4075 REMARK 3 L13: -4.7638 L23: 2.6655 REMARK 3 S TENSOR REMARK 3 S11: 0.0696 S12: -0.2210 S13: 0.3613 REMARK 3 S21: 0.0597 S22: 0.0638 S23: -0.1030 REMARK 3 S31: -0.1838 S32: 0.5315 S33: -0.1342 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 98:140) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6434 22.1412 6.4432 REMARK 3 T TENSOR REMARK 3 T11: 0.2548 T22: 0.2975 REMARK 3 T33: 0.2938 T12: 0.0442 REMARK 3 T13: -0.0081 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 2.3240 L22: 4.6246 REMARK 3 L33: 2.4187 L12: 0.7584 REMARK 3 L13: 0.3045 L23: 0.4816 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: 0.0098 S13: 0.4001 REMARK 3 S21: 0.1897 S22: -0.0266 S23: 0.5683 REMARK 3 S31: -0.3284 S32: -0.1771 S33: 0.1427 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 141:180) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0203 15.5264 1.2133 REMARK 3 T TENSOR REMARK 3 T11: 0.1987 T22: 0.2618 REMARK 3 T33: 0.2615 T12: 0.0213 REMARK 3 T13: -0.0223 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 1.3414 L22: 4.3880 REMARK 3 L33: 9.2857 L12: -0.3959 REMARK 3 L13: 0.0698 L23: -5.4325 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: 0.0723 S13: -0.0171 REMARK 3 S21: -0.0084 S22: -0.1586 S23: -0.2363 REMARK 3 S31: -0.0467 S32: 0.2789 S33: 0.0638 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 181:201) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3777 1.0263 9.2519 REMARK 3 T TENSOR REMARK 3 T11: 0.2844 T22: 0.3570 REMARK 3 T33: 0.2947 T12: 0.1005 REMARK 3 T13: -0.0140 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 2.8836 L22: 6.3138 REMARK 3 L33: 6.6986 L12: 0.3028 REMARK 3 L13: -4.4043 L23: 0.0740 REMARK 3 S TENSOR REMARK 3 S11: -0.1527 S12: -0.1409 S13: -0.3292 REMARK 3 S21: 0.0038 S22: 0.0529 S23: -0.5424 REMARK 3 S31: 0.9240 S32: 0.8400 S33: 0.1584 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 202:248) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6618 2.6881 23.5884 REMARK 3 T TENSOR REMARK 3 T11: 0.2367 T22: 0.3586 REMARK 3 T33: 0.2928 T12: 0.0462 REMARK 3 T13: 0.0227 T23: -0.0460 REMARK 3 L TENSOR REMARK 3 L11: 0.9693 L22: 3.0599 REMARK 3 L33: 6.6626 L12: 0.2494 REMARK 3 L13: -0.1090 L23: 0.7569 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: -0.1132 S13: 0.0816 REMARK 3 S21: 0.2764 S22: -0.1646 S23: 0.4333 REMARK 3 S31: -0.1611 S32: -0.5470 S33: 0.2173 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 249:259) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0712 11.3332 26.6053 REMARK 3 T TENSOR REMARK 3 T11: 0.4677 T22: 0.3832 REMARK 3 T33: 0.2579 T12: 0.0267 REMARK 3 T13: 0.0803 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 9.2069 L22: 2.3692 REMARK 3 L33: 9.5992 L12: -4.2693 REMARK 3 L13: -0.2527 L23: 8.4678 REMARK 3 S TENSOR REMARK 3 S11: -0.1016 S12: -0.3056 S13: 0.1802 REMARK 3 S21: 0.9391 S22: -0.0506 S23: 0.3508 REMARK 3 S31: -0.3617 S32: -0.3600 S33: 0.0861 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 0:17) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3013 6.8392 -28.8609 REMARK 3 T TENSOR REMARK 3 T11: 0.7625 T22: 0.6066 REMARK 3 T33: 0.3924 T12: -0.1912 REMARK 3 T13: 0.1085 T23: 0.0596 REMARK 3 L TENSOR REMARK 3 L11: 9.7150 L22: 2.6353 REMARK 3 L33: 4.8926 L12: 4.1206 REMARK 3 L13: 2.0289 L23: 4.1015 REMARK 3 S TENSOR REMARK 3 S11: -1.1846 S12: 1.3017 S13: -0.4930 REMARK 3 S21: -1.8278 S22: 1.1054 S23: -0.3400 REMARK 3 S31: -0.5100 S32: 0.0808 S33: -0.1047 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 18:31) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5730 10.7440 -21.4456 REMARK 3 T TENSOR REMARK 3 T11: 0.3533 T22: 0.3274 REMARK 3 T33: 0.3777 T12: -0.0161 REMARK 3 T13: 0.0805 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.9222 L22: 0.9593 REMARK 3 L33: 7.1698 L12: 1.9317 REMARK 3 L13: 1.1972 L23: -0.4263 REMARK 3 S TENSOR REMARK 3 S11: -0.2173 S12: 0.5218 S13: -0.2184 REMARK 3 S21: -0.1336 S22: 0.1305 S23: -0.0486 REMARK 3 S31: 0.4626 S32: -0.0798 S33: 0.0777 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 32:95) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2801 4.5075 -19.3822 REMARK 3 T TENSOR REMARK 3 T11: 0.4100 T22: 0.4026 REMARK 3 T33: 0.3320 T12: -0.1099 REMARK 3 T13: 0.0365 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 4.4372 L22: 4.0907 REMARK 3 L33: 9.5402 L12: 1.9579 REMARK 3 L13: -0.3677 L23: -0.5201 REMARK 3 S TENSOR REMARK 3 S11: -0.4891 S12: 0.4098 S13: -0.4267 REMARK 3 S21: -0.5105 S22: 0.3544 S23: 0.3100 REMARK 3 S31: 0.7528 S32: -1.1426 S33: 0.0957 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 96:128) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1876 11.9810 -21.2688 REMARK 3 T TENSOR REMARK 3 T11: 0.3378 T22: 0.4901 REMARK 3 T33: 0.2755 T12: -0.0570 REMARK 3 T13: -0.0355 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 4.7735 L22: 6.9204 REMARK 3 L33: 7.8729 L12: 3.5387 REMARK 3 L13: 3.1634 L23: 4.2740 REMARK 3 S TENSOR REMARK 3 S11: -0.3743 S12: 0.7153 S13: -0.0527 REMARK 3 S21: -0.8530 S22: 0.3383 S23: 0.3907 REMARK 3 S31: -0.1907 S32: -0.5649 S33: 0.0992 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J56 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V1.0 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49957 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.729 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.99600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE PH 4.6 AND 8% REMARK 280 PEG4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.34400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.67200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.67200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 143.34400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 422 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ILE A 1 REMARK 465 PHE A 2 REMARK 465 PRO A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 35 REMARK 465 ALA A 260 REMARK 465 PRO A 261 REMARK 465 PRO A 262 REMARK 465 PRO A 263 REMARK 465 SER A 264 REMARK 465 SER A 265 REMARK 465 GLN A 266 REMARK 465 PHE A 267 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 201 O HOH B 259 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 41 -4.84 80.44 REMARK 500 ILE A 175 -61.99 -121.96 REMARK 500 PRO B 14 133.86 -39.26 REMARK 500 SER B 127 163.05 177.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 273 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 274 DISTANCE = 6.18 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J57 RELATED DB: PDB DBREF 5J56 A 1 267 UNP P02879 RICI_RICCO 36 302 DBREF 5J56 B 0 128 PDB 5J56 5J56 0 128 SEQADV 5J56 MET A 0 UNP P02879 INITIATING METHIONINE SEQRES 1 A 268 MET ILE PHE PRO LYS GLN TYR PRO ILE ILE ASN PHE THR SEQRES 2 A 268 THR ALA GLY ALA THR VAL GLN SER TYR THR ASN PHE ILE SEQRES 3 A 268 ARG ALA VAL ARG GLY ARG LEU THR THR GLY ALA ASP VAL SEQRES 4 A 268 ARG HIS GLU ILE PRO VAL LEU PRO ASN ARG VAL GLY LEU SEQRES 5 A 268 PRO ILE ASN GLN ARG PHE ILE LEU VAL GLU LEU SER ASN SEQRES 6 A 268 HIS ALA GLU LEU SER VAL THR LEU ALA LEU ASP VAL THR SEQRES 7 A 268 ASN ALA TYR VAL VAL GLY TYR ARG ALA GLY ASN SER ALA SEQRES 8 A 268 TYR PHE PHE HIS PRO ASP ASN GLN GLU ASP ALA GLU ALA SEQRES 9 A 268 ILE THR HIS LEU PHE THR ASP VAL GLN ASN ARG TYR THR SEQRES 10 A 268 PHE ALA PHE GLY GLY ASN TYR ASP ARG LEU GLU GLN LEU SEQRES 11 A 268 ALA GLY ASN LEU ARG GLU ASN ILE GLU LEU GLY ASN GLY SEQRES 12 A 268 PRO LEU GLU GLU ALA ILE SER ALA LEU TYR TYR TYR SER SEQRES 13 A 268 THR GLY GLY THR GLN LEU PRO THR LEU ALA ARG SER PHE SEQRES 14 A 268 ILE ILE CYS ILE GLN MET ILE SER GLU ALA ALA ARG PHE SEQRES 15 A 268 GLN TYR ILE GLU GLY GLU MET ARG THR ARG ILE ARG TYR SEQRES 16 A 268 ASN ARG ARG SER ALA PRO ASP PRO SER VAL ILE THR LEU SEQRES 17 A 268 GLU ASN SER TRP GLY ARG LEU SER THR ALA ILE GLN GLU SEQRES 18 A 268 SER ASN GLN GLY ALA PHE ALA SER PRO ILE GLN LEU GLN SEQRES 19 A 268 ARG ARG ASN GLY SER LYS PHE SER VAL TYR ASP VAL SER SEQRES 20 A 268 ILE LEU ILE PRO ILE ILE ALA LEU MET VAL TYR ARG CYS SEQRES 21 A 268 ALA PRO PRO PRO SER SER GLN PHE SEQRES 1 B 129 ALA GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL SEQRES 2 B 129 GLN PRO GLY GLY SER LEU ARG LEU SER CYS VAL ALA SER SEQRES 3 B 129 GLU PHE SER GLY PHE THR LEU ASP TYR TYR ALA ILE GLY SEQRES 4 B 129 TRP PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU GLY LEU SEQRES 5 B 129 SER SER ILE SER SER SER SER ASP GLY PHE THR SER TYR SEQRES 6 B 129 SER ASP SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP SEQRES 7 B 129 ASN ALA LYS ASN THR VAL TYR LEU GLN MET ASN SER LEU SEQRES 8 B 129 LYS PRO GLU ASP THR ALA VAL TYR TYR CYS ALA ALA ARG SEQRES 9 B 129 LEU GLY GLY TRP ALA SER PHE SER PRO GLN GLU TYR ASP SEQRES 10 B 129 TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SER HET PG4 A 301 7 HET ACY A 302 4 HET ACY A 303 4 HET EDO A 304 4 HET CL A 305 1 HET CL A 306 1 HET CL A 307 1 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM ACY ACETIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PG4 C8 H18 O5 FORMUL 4 ACY 2(C2 H4 O2) FORMUL 6 EDO C2 H6 O2 FORMUL 7 CL 3(CL 1-) FORMUL 10 HOH *231(H2 O) HELIX 1 AA1 THR A 17 THR A 33 1 17 HELIX 2 AA2 PRO A 52 GLN A 55 5 4 HELIX 3 AA3 ASN A 97 THR A 105 1 9 HELIX 4 AA4 ASN A 122 GLY A 131 1 10 HELIX 5 AA5 LEU A 133 ILE A 137 5 5 HELIX 6 AA6 GLY A 140 TYR A 154 1 15 HELIX 7 AA7 GLN A 160 ILE A 175 1 16 HELIX 8 AA8 ILE A 175 PHE A 181 1 7 HELIX 9 AA9 PHE A 181 TYR A 194 1 14 HELIX 10 AB1 ASP A 201 GLU A 220 1 20 HELIX 11 AB2 SER A 246 ILE A 249 5 4 HELIX 12 AB3 THR B 31 ASP B 33 5 3 HELIX 13 AB4 ASN B 78 LYS B 80 5 3 HELIX 14 AB5 LYS B 91 THR B 95 5 5 HELIX 15 AB6 SER B 111 TYR B 115 5 5 SHEET 1 AA1 6 ILE A 8 THR A 12 0 SHEET 2 AA1 6 PHE A 57 SER A 63 1 O GLU A 61 N PHE A 11 SHEET 3 AA1 6 SER A 69 ASP A 75 -1 O VAL A 70 N LEU A 62 SHEET 4 AA1 6 VAL A 81 ALA A 86 -1 O VAL A 82 N ALA A 73 SHEET 5 AA1 6 SER A 89 PHE A 92 -1 O SER A 89 N ALA A 86 SHEET 6 AA1 6 ASN A 113 THR A 116 1 O ASN A 113 N ALA A 90 SHEET 1 AA2 2 VAL A 38 ARG A 39 0 SHEET 2 AA2 2 ILE A 42 PRO A 43 -1 O ILE A 42 N ARG A 39 SHEET 1 AA3 2 ALA A 225 GLN A 233 0 SHEET 2 AA3 2 LYS A 239 ASP A 244 -1 O PHE A 240 N LEU A 232 SHEET 1 AA4 4 LEU B 4 SER B 7 0 SHEET 2 AA4 4 LEU B 18 ALA B 24 -1 O SER B 21 N SER B 7 SHEET 3 AA4 4 THR B 82 MET B 87 -1 O MET B 87 N LEU B 18 SHEET 4 AA4 4 PHE B 72 ASP B 77 -1 N ASP B 77 O THR B 82 SHEET 1 AA5 6 GLY B 10 VAL B 12 0 SHEET 2 AA5 6 THR B 122 VAL B 126 1 O THR B 125 N VAL B 12 SHEET 3 AA5 6 ALA B 96 LEU B 104 -1 N TYR B 98 O THR B 122 SHEET 4 AA5 6 TYR B 35 GLN B 42 -1 N PHE B 40 O TYR B 99 SHEET 5 AA5 6 GLU B 49 ILE B 54 -1 O SER B 52 N TRP B 39 SHEET 6 AA5 6 THR B 62 TYR B 64 -1 O SER B 63 N SER B 53 SHEET 1 AA6 4 GLY B 10 VAL B 12 0 SHEET 2 AA6 4 THR B 122 VAL B 126 1 O THR B 125 N VAL B 12 SHEET 3 AA6 4 ALA B 96 LEU B 104 -1 N TYR B 98 O THR B 122 SHEET 4 AA6 4 TYR B 117 TRP B 118 -1 O TYR B 117 N ALA B 102 SITE 1 AC1 6 HIS A 94 THR A 116 PHE A 117 ALA A 118 SITE 2 AC1 6 TYR A 154 CL A 307 SITE 1 AC2 6 ALA A 118 PHE A 119 GLY A 120 ARG A 125 SITE 2 AC2 6 LEU A 161 HOH A 492 SITE 1 AC3 5 GLU A 146 ARG A 166 SER A 167 ILE A 170 SITE 2 AC3 5 HOH A 469 SITE 1 AC4 4 HIS A 94 TYR A 154 GLY A 157 HOH A 470 SITE 1 AC5 3 THR A 13 HIS A 65 GLU A 145 SITE 1 AC6 1 ARG A 180 SITE 1 AC7 3 PHE A 117 ALA A 118 PG4 A 301 CRYST1 64.768 64.768 215.016 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015440 0.008914 0.000000 0.00000 SCALE2 0.000000 0.017828 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004651 0.00000