HEADER OXIDOREDUCTASE 04-APR-16 5J62 TITLE FMN-DEPENDENT NITROREDUCTASE (CDR20291_0684) FROM CLOSTRIDIUM TITLE 2 DIFFICILE R20291 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEPTOCLOSTRIDIUM DIFFICILE (STRAIN R20291); SOURCE 3 ORGANISM_TAXID: 645463; SOURCE 4 STRAIN: R20291; SOURCE 5 GENE: CDR20291_0684; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS NITROREDUCTASE, HYPERVIRULENT, CLOSTRIDIUM DIFFICILE, R20291, KEYWDS 2 METRONIDAZOLE RESISTANCE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.WANG,S.M.POWELL,N.HESSAMI,F.Z.NAJAR,L.M.THOMAS,A.H.WEST,E.A.KARR, AUTHOR 2 G.B.RICHTER-ADDO REVDAT 4 27-SEP-23 5J62 1 REMARK REVDAT 3 22-NOV-17 5J62 1 REMARK REVDAT 2 05-OCT-16 5J62 1 JRNL REVDAT 1 21-SEP-16 5J62 0 JRNL AUTH B.WANG,S.M.POWELL,N.HESSAMI,F.Z.NAJAR,L.M.THOMAS,E.A.KARR, JRNL AUTH 2 A.H.WEST,G.B.RICHTER-ADDO JRNL TITL CRYSTAL STRUCTURES OF TWO NITROREDUCTASES FROM HYPERVIRULENT JRNL TITL 2 CLOSTRIDIUM DIFFICILE AND FUNCTIONALLY RELATED INTERACTIONS JRNL TITL 3 WITH THE ANTIBIOTIC METRONIDAZOLE. JRNL REF NITRIC OXIDE V. 60 32 2016 JRNL REFN ESSN 1089-8611 JRNL PMID 27623089 JRNL DOI 10.1016/J.NIOX.2016.09.003 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1415 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1951 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3259 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.190 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3401 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3235 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4622 ; 1.766 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7467 ; 1.041 ; 2.983 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 417 ; 5.865 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;36.896 ;25.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 589 ;15.609 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ; 8.659 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 527 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3833 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 727 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1671 ; 3.998 ; 4.232 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1670 ; 3.975 ; 4.230 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2087 ; 5.489 ; 6.321 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5J62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28386 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.90 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 0.74200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, PHASER 2.5.6 REMARK 200 STARTING MODEL: ENSEMBLE MODEL OF 3PXV AND 3EK3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, PH 5.6 10% PEG REMARK 280 1500, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.96050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.16150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.16150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.98025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.16150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.16150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.94075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.16150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.16150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.98025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.16150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.16150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.94075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.96050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ASN A 3 REMARK 465 ASN A 4 REMARK 465 PHE A 5 REMARK 465 ALA A 214 REMARK 465 GLU A 215 REMARK 465 ASN A 216 REMARK 465 LEU A 217 REMARK 465 TYR A 218 REMARK 465 PHE A 219 REMARK 465 GLN A 220 REMARK 465 GLY A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ASN B 3 REMARK 465 ASN B 4 REMARK 465 PHE B 5 REMARK 465 GLN B 6 REMARK 465 ASN B 216 REMARK 465 LEU B 217 REMARK 465 TYR B 218 REMARK 465 PHE B 219 REMARK 465 GLN B 220 REMARK 465 GLY B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 HIS B 230 REMARK 465 HIS B 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 105 N - CA - CB ANGL. DEV. = -9.1 DEGREES REMARK 500 ARG B 17 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 212 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 144 58.65 -92.30 REMARK 500 ASP A 158 80.35 32.20 REMARK 500 PRO B 51 48.03 -84.48 REMARK 500 ALA B 214 -127.25 46.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J6C RELATED DB: PDB DBREF 5J62 A 1 213 UNP C9YJD4 C9YJD4_PEPDR 1 213 DBREF 5J62 B 1 213 UNP C9YJD4 C9YJD4_PEPDR 1 213 SEQADV 5J62 ALA A 214 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 GLU A 215 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 ASN A 216 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 LEU A 217 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 TYR A 218 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 PHE A 219 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 GLN A 220 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 GLY A 221 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS A 222 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS A 223 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS A 224 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS A 225 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS A 226 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS A 227 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS A 228 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS A 229 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS A 230 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS A 231 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 ALA B 214 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 GLU B 215 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 ASN B 216 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 LEU B 217 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 TYR B 218 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 PHE B 219 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 GLN B 220 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 GLY B 221 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS B 222 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS B 223 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS B 224 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS B 225 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS B 226 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS B 227 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS B 228 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS B 229 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS B 230 UNP C9YJD4 EXPRESSION TAG SEQADV 5J62 HIS B 231 UNP C9YJD4 EXPRESSION TAG SEQRES 1 A 231 MET ASN ASN ASN PHE GLN ASP ASN GLN THR ILE ASN LEU SEQRES 2 A 231 ILE GLN SER ARG ARG SER ILE ARG LYS PHE THR THR GLU SEQRES 3 A 231 GLN ILE SER ASP GLU GLN VAL ASN THR LEU LEU HIS CYS SEQRES 4 A 231 ALA PHE ALA ALA PRO SER GLY CYS ASN LYS GLN PRO TRP SEQRES 5 A 231 HIS ILE THR VAL VAL GLN ASP GLN LYS LEU LEU LYS GLU SEQRES 6 A 231 ILE SER ASP ASP THR LEU SER ARG ILE HIS GLU VAL SER SEQRES 7 A 231 ASN VAL GLU ILE ASN LYS ASN PHE LYS LEU PHE TYR GLY SEQRES 8 A 231 ALA PRO THR VAL LEU PHE ILE SER TYR ASP GLU SER SER SEQRES 9 A 231 SER TRP ALA PRO TYR ASP ILE GLY ILE LEU THR GLY ASN SEQRES 10 A 231 ILE THR THR ALA ALA GLN ALA LEU GLY LEU GLY SER CYS SEQRES 11 A 231 ILE ILE GLY MET VAL ARG GLY LEU PHE THR PRO VAL GLU SEQRES 12 A 231 GLN GLY ASP ILE GLU GLY LEU VAL SER VAL LEU ASP LYS SEQRES 13 A 231 GLU ASP VAL LYS GLU SER GLU SER ILE LYS MET LYS PHE SEQRES 14 A 231 ASP THR ASN LYS LYS TYR ARG GLU LEU LEU ASP ILE PRO SEQRES 15 A 231 GLU GLY TYR SER VAL PRO PHE GLY ILE ALA VAL GLY ILE SEQRES 16 A 231 PRO ASP GLY ASN LEU PRO ASN ALA ARG GLU VAL VAL TYR SEQRES 17 A 231 LYS VAL SER ARG VAL ALA GLU ASN LEU TYR PHE GLN GLY SEQRES 18 A 231 HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 231 MET ASN ASN ASN PHE GLN ASP ASN GLN THR ILE ASN LEU SEQRES 2 B 231 ILE GLN SER ARG ARG SER ILE ARG LYS PHE THR THR GLU SEQRES 3 B 231 GLN ILE SER ASP GLU GLN VAL ASN THR LEU LEU HIS CYS SEQRES 4 B 231 ALA PHE ALA ALA PRO SER GLY CYS ASN LYS GLN PRO TRP SEQRES 5 B 231 HIS ILE THR VAL VAL GLN ASP GLN LYS LEU LEU LYS GLU SEQRES 6 B 231 ILE SER ASP ASP THR LEU SER ARG ILE HIS GLU VAL SER SEQRES 7 B 231 ASN VAL GLU ILE ASN LYS ASN PHE LYS LEU PHE TYR GLY SEQRES 8 B 231 ALA PRO THR VAL LEU PHE ILE SER TYR ASP GLU SER SER SEQRES 9 B 231 SER TRP ALA PRO TYR ASP ILE GLY ILE LEU THR GLY ASN SEQRES 10 B 231 ILE THR THR ALA ALA GLN ALA LEU GLY LEU GLY SER CYS SEQRES 11 B 231 ILE ILE GLY MET VAL ARG GLY LEU PHE THR PRO VAL GLU SEQRES 12 B 231 GLN GLY ASP ILE GLU GLY LEU VAL SER VAL LEU ASP LYS SEQRES 13 B 231 GLU ASP VAL LYS GLU SER GLU SER ILE LYS MET LYS PHE SEQRES 14 B 231 ASP THR ASN LYS LYS TYR ARG GLU LEU LEU ASP ILE PRO SEQRES 15 B 231 GLU GLY TYR SER VAL PRO PHE GLY ILE ALA VAL GLY ILE SEQRES 16 B 231 PRO ASP GLY ASN LEU PRO ASN ALA ARG GLU VAL VAL TYR SEQRES 17 B 231 LYS VAL SER ARG VAL ALA GLU ASN LEU TYR PHE GLN GLY SEQRES 18 B 231 HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS HET FMN A 301 31 HET GOL A 302 6 HET PO4 A 303 5 HET FMN B 301 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 GOL C3 H8 O3 FORMUL 5 PO4 O4 P 3- FORMUL 7 HOH *138(H2 O) HELIX 1 AA1 ASN A 8 ARG A 17 1 10 HELIX 2 AA2 SER A 29 ALA A 42 1 14 HELIX 3 AA3 SER A 45 LYS A 49 5 5 HELIX 4 AA4 ASP A 59 ASN A 79 1 21 HELIX 5 AA5 TRP A 106 LEU A 125 1 20 HELIX 6 AA6 VAL A 135 THR A 140 1 6 HELIX 7 AA7 GLY A 145 ASP A 155 1 11 HELIX 8 AA8 VAL A 159 LEU A 179 1 21 HELIX 9 AA9 ASN B 8 ARG B 17 1 10 HELIX 10 AB1 SER B 29 ALA B 42 1 14 HELIX 11 AB2 SER B 45 LYS B 49 5 5 HELIX 12 AB3 ASP B 59 SER B 78 1 20 HELIX 13 AB4 TRP B 106 LEU B 125 1 20 HELIX 14 AB5 GLY B 133 PHE B 139 5 7 HELIX 15 AB6 GLU B 143 VAL B 153 1 11 HELIX 16 AB7 LEU B 154 GLU B 157 5 4 HELIX 17 AB8 ASP B 170 LEU B 179 1 10 SHEET 1 AA1 5 GLY A 128 GLY A 133 0 SHEET 2 AA1 5 TYR A 185 GLY A 194 -1 O GLY A 190 N ILE A 132 SHEET 3 AA1 5 THR A 94 ASP A 101 -1 N THR A 94 O VAL A 193 SHEET 4 AA1 5 TRP A 52 VAL A 57 -1 N VAL A 57 O VAL A 95 SHEET 5 AA1 5 VAL B 210 VAL B 213 1 O VAL B 213 N VAL A 56 SHEET 1 AA2 5 VAL A 210 VAL A 213 0 SHEET 2 AA2 5 TRP B 52 VAL B 57 1 O VAL B 56 N SER A 211 SHEET 3 AA2 5 THR B 94 TYR B 100 -1 O PHE B 97 N THR B 55 SHEET 4 AA2 5 SER B 186 GLY B 194 -1 O VAL B 193 N THR B 94 SHEET 5 AA2 5 GLY B 128 ILE B 132 -1 N ILE B 132 O GLY B 190 SHEET 1 AA3 2 VAL B 80 ILE B 82 0 SHEET 2 AA3 2 VAL B 159 GLU B 161 -1 O LYS B 160 N GLU B 81 SITE 1 AC1 21 ARG A 17 ARG A 18 SER A 19 ARG A 21 SITE 2 AC1 21 TYR A 90 CYS A 130 ILE A 131 ILE A 132 SITE 3 AC1 21 GLY A 133 GLU A 143 GLU A 148 ARG A 204 SITE 4 AC1 21 HOH A 405 HOH A 421 HOH A 446 PRO B 44 SITE 5 AC1 21 SER B 45 GLY B 46 ASN B 48 TRP B 106 SITE 6 AC1 21 ASP B 110 SITE 1 AC2 7 ASP A 180 ILE A 181 PRO A 182 GLU A 183 SITE 2 AC2 7 HOH A 402 ARG B 204 GLU B 205 SITE 1 AC3 4 CYS A 47 HOH A 442 ASP B 146 FMN B 301 SITE 1 AC4 21 PRO A 44 SER A 45 GLY A 46 ASN A 48 SITE 2 AC4 21 TRP A 106 ASP A 110 PO4 A 303 HOH A 442 SITE 3 AC4 21 ARG B 17 ARG B 18 SER B 19 ARG B 21 SITE 4 AC4 21 TYR B 90 CYS B 130 ILE B 131 ILE B 132 SITE 5 AC4 21 GLY B 133 MET B 134 ARG B 204 HOH B 402 SITE 6 AC4 21 HOH B 433 CRYST1 100.323 100.323 99.921 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009968 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009968 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010008 0.00000