HEADER OXIDOREDUCTASE/INHIBITOR 04-APR-16 5J6D TITLE DISCOVERY OF ACYL GUANIDINE TRYPTOPHAN HYDROXYLASE-1 INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTOPHAN 5-HYDROXYLASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 102-402; COMPND 5 SYNONYM: TRYPTOPHAN 5-MONOOXYGENASE 1; COMPND 6 EC: 1.14.16.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TPH1, TPH, TPRH, TRPH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS TPH1, IRON, ACYL, QUANIDINE, OXIDOREDUCTASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.J.STEIN,D.R.GOLDBERG,S.DE LOMBAERT REVDAT 3 27-SEP-23 5J6D 1 JRNL REMARK LINK REVDAT 2 15-JUN-16 5J6D 1 JRNL REVDAT 1 25-MAY-16 5J6D 0 JRNL AUTH D.R.GOLDBERG,S.DE LOMBAERT,R.AIELLO,P.BOURASSA,N.BARUCCI, JRNL AUTH 2 Q.ZHANG,V.PARALKAR,A.J.STEIN,J.VALENTINE,W.ZAVADOSKI JRNL TITL DISCOVERY OF ACYL GUANIDINE TRYPTOPHAN HYDROXYLASE-1 JRNL TITL 2 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 26 2855 2016 JRNL REFN ESSN 1464-3405 JRNL PMID 27146606 JRNL DOI 10.1016/J.BMCL.2016.04.057 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2245 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4074 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.111 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4305 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3852 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5848 ; 1.461 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8830 ; 1.001 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 7.692 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;29.519 ;23.353 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 608 ;12.379 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.857 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 642 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4857 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1015 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2156 ; 2.497 ; 4.988 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2153 ; 2.497 ; 4.987 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2676 ; 3.766 ; 7.447 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2677 ; 3.765 ; 7.449 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2149 ; 2.601 ; 4.826 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2150 ; 2.601 ; 4.827 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3171 ; 3.902 ; 7.247 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4875 ; 5.837 ;38.706 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4816 ; 5.772 ;38.735 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5J6D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47119 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.79600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3HF8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, CBTP PH 8.4, 2.5 MM REMARK 280 TCEP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.36300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.23400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.78050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.23400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.36300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.78050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 394 REMARK 465 ARG A 395 REMARK 465 PRO A 396 REMARK 465 PHE A 397 REMARK 465 GLY A 398 REMARK 465 VAL A 399 REMARK 465 LYS A 400 REMARK 465 TYR A 401 REMARK 465 ASN A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 ALA B 131 REMARK 465 ASP B 132 REMARK 465 HIS B 133 REMARK 465 PRO B 134 REMARK 465 GLY B 135 REMARK 465 PHE B 136 REMARK 465 LYS B 137 REMARK 465 GLY B 158 REMARK 465 ASP B 159 REMARK 465 GLU B 165 REMARK 465 PHE B 166 REMARK 465 THR B 167 REMARK 465 GLU B 168 REMARK 465 GLU B 169 REMARK 465 GLU B 170 REMARK 465 ILE B 171 REMARK 465 SER B 201 REMARK 465 LYS B 202 REMARK 465 TYR B 203 REMARK 465 CYS B 204 REMARK 465 GLY B 205 REMARK 465 TYR B 206 REMARK 465 ARG B 207 REMARK 465 GLU B 208 REMARK 465 ASP B 209 REMARK 465 ASN B 210 REMARK 465 ILE B 211 REMARK 465 PRO B 212 REMARK 465 GLN B 213 REMARK 465 LYS B 322 REMARK 465 GLN B 323 REMARK 465 ASP B 324 REMARK 465 GLY B 325 REMARK 465 GLN B 326 REMARK 465 LEU B 327 REMARK 465 GLY B 347 REMARK 465 HIS B 348 REMARK 465 ALA B 349 REMARK 465 VAL B 375 REMARK 465 SER B 376 REMARK 465 GLU B 377 REMARK 465 SER B 378 REMARK 465 THR B 392 REMARK 465 ILE B 393 REMARK 465 LYS B 394 REMARK 465 ARG B 395 REMARK 465 PRO B 396 REMARK 465 PHE B 397 REMARK 465 GLY B 398 REMARK 465 VAL B 399 REMARK 465 LYS B 400 REMARK 465 TYR B 401 REMARK 465 ASN B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 465 HIS B 405 REMARK 465 HIS B 406 REMARK 465 HIS B 407 REMARK 465 HIS B 408 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 ASP A 132 CG OD1 OD2 REMARK 470 PHE A 136 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ASN A 139 CG OD1 ND2 REMARK 470 ARG A 142 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 GLU A 208 CG CD OE1 OE2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 GLN A 326 CG CD OE1 NE2 REMARK 470 GLU A 388 CG CD OE1 OE2 REMARK 470 ASP B 130 CG OD1 OD2 REMARK 470 VAL B 140 CG1 CG2 REMARK 470 TYR B 141 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 142 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 ARG B 144 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 PHE B 148 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 151 CG CD1 CD2 REMARK 470 ASN B 154 CG OD1 ND2 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 VAL B 164 CG1 CG2 REMARK 470 LYS B 172 CG CD CE NZ REMARK 470 THR B 173 OG1 CG2 REMARK 470 TRP B 174 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 174 CZ3 CH2 REMARK 470 THR B 176 OG1 CG2 REMARK 470 VAL B 177 CG1 CG2 REMARK 470 PHE B 178 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 179 CG CD OE1 NE2 REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 LEU B 181 CG CD1 CD2 REMARK 470 ASN B 182 CG OD1 ND2 REMARK 470 LYS B 183 CG CD CE NZ REMARK 470 LEU B 184 CG CD1 CD2 REMARK 470 TYR B 185 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS B 188 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 191 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 194 CG CD1 CD2 REMARK 470 LYS B 195 CG CD CE NZ REMARK 470 LEU B 199 CG CD1 CD2 REMARK 470 LEU B 214 CG CD1 CD2 REMARK 470 ASP B 216 CG OD1 OD2 REMARK 470 LYS B 222 CG CD CE NZ REMARK 470 GLU B 223 CG CD OE1 OE2 REMARK 470 ARG B 224 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 256 CG1 CG2 REMARK 470 SER B 260 OG REMARK 470 ASP B 261 CG OD1 OD2 REMARK 470 PHE B 263 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 283 CG CD OE1 OE2 REMARK 470 SER B 285 OG REMARK 470 PHE B 286 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 288 CG CD OE1 NE2 REMARK 470 GLU B 292 CG CD OE1 OE2 REMARK 470 LEU B 295 CG CD1 CD2 REMARK 470 GLU B 303 CG CD OE1 OE2 REMARK 470 ARG B 328 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 342 CG CD CE NZ REMARK 470 LYS B 350 CG CD CE NZ REMARK 470 LYS B 352 CG CD CE NZ REMARK 470 LYS B 357 CG CD CE NZ REMARK 470 ILE B 358 CG1 CG2 CD1 REMARK 470 LYS B 361 CG CD CE NZ REMARK 470 GLU B 363 CG CD OE1 OE2 REMARK 470 GLU B 380 CG CD OE1 OE2 REMARK 470 ASP B 381 CG OD1 OD2 REMARK 470 LYS B 383 CG CD CE NZ REMARK 470 GLU B 384 CG CD OE1 OE2 REMARK 470 LYS B 385 CG CD CE NZ REMARK 470 ARG B 387 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 388 CG CD OE1 OE2 REMARK 470 LYS B 391 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 124 CA - C - O ANGL. DEV. = -17.3 DEGREES REMARK 500 MET B 124 CA - C - O ANGL. DEV. = -17.2 DEGREES REMARK 500 MET B 124 CA - C - N ANGL. DEV. = 15.9 DEGREES REMARK 500 MET B 124 CA - C - N ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 127 -93.01 -128.94 REMARK 500 THR A 315 -77.23 -122.33 REMARK 500 THR A 367 1.03 83.48 REMARK 500 SER B 127 -91.40 -118.81 REMARK 500 ASP B 261 82.11 -157.74 REMARK 500 THR B 315 -76.82 -113.27 REMARK 500 THR B 367 44.02 -147.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 367 THR B 368 92.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 272 NE2 REMARK 620 2 HIS A 277 NE2 90.6 REMARK 620 3 GLU A 317 OE2 90.6 92.6 REMARK 620 4 TRS A 502 N 100.2 166.0 96.2 REMARK 620 5 TRS A 502 O2 94.1 93.3 172.4 77.1 REMARK 620 6 TRS A 502 O3 175.2 92.7 92.7 76.1 82.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 272 NE2 REMARK 620 2 HIS B 277 NE2 102.3 REMARK 620 3 GLU B 317 OE2 87.1 84.7 REMARK 620 4 TRS B 502 N 94.3 163.2 93.5 REMARK 620 5 TRS B 502 O1 106.4 101.5 163.3 76.0 REMARK 620 6 TRS B 502 O2 171.1 83.5 86.7 79.7 78.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6H5 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6H5 B 504 DBREF 5J6D A 102 402 UNP P17752 TPH1_HUMAN 102 402 DBREF 5J6D B 102 402 UNP P17752 TPH1_HUMAN 102 402 SEQADV 5J6D HIS A 403 UNP P17752 EXPRESSION TAG SEQADV 5J6D HIS A 404 UNP P17752 EXPRESSION TAG SEQADV 5J6D HIS A 405 UNP P17752 EXPRESSION TAG SEQADV 5J6D HIS A 406 UNP P17752 EXPRESSION TAG SEQADV 5J6D HIS A 407 UNP P17752 EXPRESSION TAG SEQADV 5J6D HIS A 408 UNP P17752 EXPRESSION TAG SEQADV 5J6D HIS B 403 UNP P17752 EXPRESSION TAG SEQADV 5J6D HIS B 404 UNP P17752 EXPRESSION TAG SEQADV 5J6D HIS B 405 UNP P17752 EXPRESSION TAG SEQADV 5J6D HIS B 406 UNP P17752 EXPRESSION TAG SEQADV 5J6D HIS B 407 UNP P17752 EXPRESSION TAG SEQADV 5J6D HIS B 408 UNP P17752 EXPRESSION TAG SEQRES 1 A 307 MET GLU THR VAL PRO TRP PHE PRO LYS LYS ILE SER ASP SEQRES 2 A 307 LEU ASP HIS CYS ALA ASN ARG VAL LEU MET TYR GLY SER SEQRES 3 A 307 GLU LEU ASP ALA ASP HIS PRO GLY PHE LYS ASP ASN VAL SEQRES 4 A 307 TYR ARG LYS ARG ARG LYS TYR PHE ALA ASP LEU ALA MET SEQRES 5 A 307 ASN TYR LYS HIS GLY ASP PRO ILE PRO LYS VAL GLU PHE SEQRES 6 A 307 THR GLU GLU GLU ILE LYS THR TRP GLY THR VAL PHE GLN SEQRES 7 A 307 GLU LEU ASN LYS LEU TYR PRO THR HIS ALA CYS ARG GLU SEQRES 8 A 307 TYR LEU LYS ASN LEU PRO LEU LEU SER LYS TYR CYS GLY SEQRES 9 A 307 TYR ARG GLU ASP ASN ILE PRO GLN LEU GLU ASP VAL SER SEQRES 10 A 307 ASN PHE LEU LYS GLU ARG THR GLY PHE SER ILE ARG PRO SEQRES 11 A 307 VAL ALA GLY TYR LEU SER PRO ARG ASP PHE LEU SER GLY SEQRES 12 A 307 LEU ALA PHE ARG VAL PHE HIS CYS THR GLN TYR VAL ARG SEQRES 13 A 307 HIS SER SER ASP PRO PHE TYR THR PRO GLU PRO ASP THR SEQRES 14 A 307 CYS HIS GLU LEU LEU GLY HIS VAL PRO LEU LEU ALA GLU SEQRES 15 A 307 PRO SER PHE ALA GLN PHE SER GLN GLU ILE GLY LEU ALA SEQRES 16 A 307 SER LEU GLY ALA SER GLU GLU ALA VAL GLN LYS LEU ALA SEQRES 17 A 307 THR CYS TYR PHE PHE THR VAL GLU PHE GLY LEU CYS LYS SEQRES 18 A 307 GLN ASP GLY GLN LEU ARG VAL PHE GLY ALA GLY LEU LEU SEQRES 19 A 307 SER SER ILE SER GLU LEU LYS HIS ALA LEU SER GLY HIS SEQRES 20 A 307 ALA LYS VAL LYS PRO PHE ASP PRO LYS ILE THR CYS LYS SEQRES 21 A 307 GLN GLU CYS LEU ILE THR THR PHE GLN ASP VAL TYR PHE SEQRES 22 A 307 VAL SER GLU SER PHE GLU ASP ALA LYS GLU LYS MET ARG SEQRES 23 A 307 GLU PHE THR LYS THR ILE LYS ARG PRO PHE GLY VAL LYS SEQRES 24 A 307 TYR ASN HIS HIS HIS HIS HIS HIS SEQRES 1 B 307 MET GLU THR VAL PRO TRP PHE PRO LYS LYS ILE SER ASP SEQRES 2 B 307 LEU ASP HIS CYS ALA ASN ARG VAL LEU MET TYR GLY SER SEQRES 3 B 307 GLU LEU ASP ALA ASP HIS PRO GLY PHE LYS ASP ASN VAL SEQRES 4 B 307 TYR ARG LYS ARG ARG LYS TYR PHE ALA ASP LEU ALA MET SEQRES 5 B 307 ASN TYR LYS HIS GLY ASP PRO ILE PRO LYS VAL GLU PHE SEQRES 6 B 307 THR GLU GLU GLU ILE LYS THR TRP GLY THR VAL PHE GLN SEQRES 7 B 307 GLU LEU ASN LYS LEU TYR PRO THR HIS ALA CYS ARG GLU SEQRES 8 B 307 TYR LEU LYS ASN LEU PRO LEU LEU SER LYS TYR CYS GLY SEQRES 9 B 307 TYR ARG GLU ASP ASN ILE PRO GLN LEU GLU ASP VAL SER SEQRES 10 B 307 ASN PHE LEU LYS GLU ARG THR GLY PHE SER ILE ARG PRO SEQRES 11 B 307 VAL ALA GLY TYR LEU SER PRO ARG ASP PHE LEU SER GLY SEQRES 12 B 307 LEU ALA PHE ARG VAL PHE HIS CYS THR GLN TYR VAL ARG SEQRES 13 B 307 HIS SER SER ASP PRO PHE TYR THR PRO GLU PRO ASP THR SEQRES 14 B 307 CYS HIS GLU LEU LEU GLY HIS VAL PRO LEU LEU ALA GLU SEQRES 15 B 307 PRO SER PHE ALA GLN PHE SER GLN GLU ILE GLY LEU ALA SEQRES 16 B 307 SER LEU GLY ALA SER GLU GLU ALA VAL GLN LYS LEU ALA SEQRES 17 B 307 THR CYS TYR PHE PHE THR VAL GLU PHE GLY LEU CYS LYS SEQRES 18 B 307 GLN ASP GLY GLN LEU ARG VAL PHE GLY ALA GLY LEU LEU SEQRES 19 B 307 SER SER ILE SER GLU LEU LYS HIS ALA LEU SER GLY HIS SEQRES 20 B 307 ALA LYS VAL LYS PRO PHE ASP PRO LYS ILE THR CYS LYS SEQRES 21 B 307 GLN GLU CYS LEU ILE THR THR PHE GLN ASP VAL TYR PHE SEQRES 22 B 307 VAL SER GLU SER PHE GLU ASP ALA LYS GLU LYS MET ARG SEQRES 23 B 307 GLU PHE THR LYS THR ILE LYS ARG PRO PHE GLY VAL LYS SEQRES 24 B 307 TYR ASN HIS HIS HIS HIS HIS HIS HET FE A 501 1 HET TRS A 502 8 HET GOL A 503 6 HET 6H5 A 504 40 HET FE B 501 1 HET TRS B 502 8 HET GOL B 503 6 HET 6H5 B 504 40 HETNAM FE FE (III) ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETNAM 6H5 4-[(N-{[2-(3-METHOXYPHENOXY)-6-(PIPERIDIN-1-YL) HETNAM 2 6H5 PHENYL]METHYL}CARBAMIMIDOYL)CARBAMOYL]-L-PHENYLALANINE HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FE 2(FE 3+) FORMUL 4 TRS 2(C4 H12 N O3 1+) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 6H5 2(C30 H35 N5 O5) FORMUL 11 HOH *140(H2 O) HELIX 1 AA1 LYS A 111 CYS A 118 5 8 HELIX 2 AA2 ASP A 138 TYR A 155 1 18 HELIX 3 AA3 THR A 167 ALA A 189 1 23 HELIX 4 AA4 CYS A 190 GLY A 205 1 16 HELIX 5 AA5 GLN A 213 GLY A 226 1 14 HELIX 6 AA6 SER A 237 ALA A 246 1 10 HELIX 7 AA7 ASP A 269 HIS A 277 1 9 HELIX 8 AA8 HIS A 277 ALA A 282 1 6 HELIX 9 AA9 GLU A 283 LEU A 298 1 16 HELIX 10 AB1 SER A 301 PHE A 314 1 14 HELIX 11 AB2 GLY A 331 SER A 336 1 6 HELIX 12 AB3 SER A 337 LEU A 345 1 9 HELIX 13 AB4 ASP A 355 CYS A 360 1 6 HELIX 14 AB5 SER A 378 LYS A 391 1 14 HELIX 15 AB6 LYS B 111 SER B 113 5 3 HELIX 16 AB7 ASP B 114 ALA B 119 1 6 HELIX 17 AB8 ASN B 139 TYR B 155 1 17 HELIX 18 AB9 THR B 173 ALA B 189 1 17 HELIX 19 AC1 CYS B 190 LEU B 197 1 8 HELIX 20 AC2 GLU B 215 THR B 225 1 11 HELIX 21 AC3 SER B 237 PHE B 247 1 11 HELIX 22 AC4 ASP B 269 HIS B 277 1 9 HELIX 23 AC5 HIS B 277 ALA B 282 1 6 HELIX 24 AC6 GLU B 283 LEU B 298 1 16 HELIX 25 AC7 SER B 301 THR B 315 1 15 HELIX 26 AC8 GLY B 331 SER B 336 1 6 HELIX 27 AC9 SER B 337 SER B 346 1 10 HELIX 28 AD1 ASP B 355 CYS B 360 1 6 HELIX 29 AD2 GLU B 380 LYS B 391 1 12 SHEET 1 AA1 2 SER A 228 PRO A 231 0 SHEET 2 AA1 2 VAL A 249 CYS A 252 1 O PHE A 250 N SER A 228 SHEET 1 AA2 4 GLN A 326 VAL A 329 0 SHEET 2 AA2 4 LEU A 320 GLN A 323 -1 N CYS A 321 O ARG A 328 SHEET 3 AA2 4 VAL A 372 SER A 376 1 O PHE A 374 N LEU A 320 SHEET 4 AA2 4 LYS A 350 PRO A 353 1 N LYS A 352 O VAL A 375 SHEET 1 AA3 2 SER B 228 PRO B 231 0 SHEET 2 AA3 2 VAL B 249 CYS B 252 1 O PHE B 250 N SER B 228 LINK NE2 HIS A 272 FE FE A 501 1555 1555 2.16 LINK NE2 HIS A 277 FE FE A 501 1555 1555 2.08 LINK OE2 GLU A 317 FE FE A 501 1555 1555 2.15 LINK FE FE A 501 N TRS A 502 1555 1555 2.25 LINK FE FE A 501 O2 TRS A 502 1555 1555 2.17 LINK FE FE A 501 O3 TRS A 502 1555 1555 2.21 LINK NE2 HIS B 272 FE FE B 501 1555 1555 2.24 LINK NE2 HIS B 277 FE FE B 501 1555 1555 2.36 LINK OE2 GLU B 317 FE FE B 501 1555 1555 1.90 LINK FE FE B 501 N TRS B 502 1555 1555 2.43 LINK FE FE B 501 O1 TRS B 502 1555 1555 2.18 LINK FE FE B 501 O2 TRS B 502 1555 1555 2.10 SITE 1 AC1 4 HIS A 272 HIS A 277 GLU A 317 TRS A 502 SITE 1 AC2 9 HIS A 272 GLU A 273 HIS A 277 TYR A 312 SITE 2 AC2 9 GLU A 317 FE A 501 6H5 A 504 HOH A 606 SITE 3 AC2 9 HOH A 621 SITE 1 AC3 5 TRP A 107 LYS A 110 ASP A 114 VAL B 122 SITE 2 AC3 5 MET B 124 SITE 1 AC4 22 TYR A 235 LEU A 236 ARG A 257 TYR A 264 SITE 2 AC4 22 THR A 265 PRO A 266 GLU A 267 PRO A 268 SITE 3 AC4 22 HIS A 272 ALA A 309 TYR A 312 PHE A 313 SITE 4 AC4 22 GLU A 317 GLY A 333 SER A 336 SER A 337 SITE 5 AC4 22 ILE A 366 TRS A 502 HOH A 641 HOH A 696 SITE 6 AC4 22 MET B 102 THR B 104 SITE 1 AC5 4 HIS B 272 HIS B 277 GLU B 317 TRS B 502 SITE 1 AC6 10 PHE B 241 PRO B 268 HIS B 272 GLU B 273 SITE 2 AC6 10 HIS B 277 GLU B 317 FE B 501 6H5 B 504 SITE 3 AC6 10 HOH B 603 HOH B 605 SITE 1 AC7 7 VAL A 122 MET A 124 TRP B 107 LYS B 110 SITE 2 AC7 7 LYS B 111 ASP B 114 HOH B 613 SITE 1 AC8 17 MET A 102 LEU B 129 TYR B 235 LEU B 236 SITE 2 AC8 17 ARG B 257 TYR B 264 THR B 265 PRO B 268 SITE 3 AC8 17 HIS B 272 TYR B 312 PHE B 313 GLU B 317 SITE 4 AC8 17 GLY B 333 SER B 336 SER B 337 ILE B 366 SITE 5 AC8 17 TRS B 502 CRYST1 58.726 63.561 156.468 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017028 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015733 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006391 0.00000