data_5J6U # _entry.id 5J6U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5J6U pdb_00005j6u 10.2210/pdb5j6u/pdb WWPDB D_1000219957 ? ? BMRB 30058 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 30058 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5J6U _pdbx_database_status.recvd_initial_deposition_date 2016-04-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Dvorkin, S.A.' 1 ? 'Karsisiotis, A.I.' 2 ? 'Webba da Silva, M.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Adv' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2375-2548 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 4 _citation.language ? _citation.page_first eaat3007 _citation.page_last eaat3007 _citation.title 'Encoding canonical DNA quadruplex structure.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/sciadv.aat3007 _citation.pdbx_database_id_PubMed 30182059 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dvorkin, S.A.' 1 0000-0003-2924-751X primary 'Karsisiotis, A.I.' 2 ? primary 'Webba da Silva, M.' 3 0000-0001-6146-2522 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'DNA (25-MER)' _entity.formula_weight 7978.100 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DG)(DG)(DG)(DT)(DT)(DT)(DG)(DG)(DG)(DG)(DT)(DT)(DT)(DT)(DG)(DG)(DG)(DG)(DA) (DA)(DG)(DG)(DG)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can GGGGTTTGGGGTTTTGGGGAAGGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DT n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DG n 1 12 DT n 1 13 DT n 1 14 DT n 1 15 DT n 1 16 DG n 1 17 DG n 1 18 DG n 1 19 DG n 1 20 DA n 1 21 DA n 1 22 DG n 1 23 DG n 1 24 DG n 1 25 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 25 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5J6U _struct_ref.pdbx_db_accession 5J6U _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5J6U _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 25 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5J6U _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 25 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 25 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 2 isotropic 3 1 1 '2D DQF-COSY' 1 isotropic 4 1 1 '2D 1H-1H TOCSY' 1 isotropic 5 1 1 '2D 1H-31P HSQC' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength '23 mM sodium' _pdbx_nmr_exptl_sample_conditions.details '20 mM NaCl, 3 mM NaPi, pH 6.8' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label S065_h2o_d2o _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2 mM DNA (25-MER), 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label S065_h2o _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details '20 mM NaCl, 3 mM NaPi, pH 6.8' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 VNMRS ? Varian 500 ? 2 'AVANCE III' ? Bruker 900 ? # _pdbx_nmr_refine.entry_id 5J6U _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 5J6U _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 11 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5J6U _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'structure calculation' Xplor-NIH ? 'Schwieters, Kuszewski, Tjandra and Clore' 2 'chemical shift assignment' Felix ? 'Accelrys Software Inc.' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5J6U _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5J6U _struct.title 'DIY G-Quadruplexes: Solution Structure of d(GGGGTTTGGGGTTTTGGGGAAGGGG) in sodium' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5J6U _struct_keywords.text 'Programmed design of G-quadruplex folding topology, Structure from MOLMOL, DNA' _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 11 N2 ? ? A DG 1 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 11 N1 ? ? A DG 1 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 16 O6 ? ? A DG 1 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 16 N7 ? ? A DG 1 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 2 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 2 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 17 N2 ? ? A DG 2 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 17 N1 ? ? A DG 2 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 9 N2 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 9 N1 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 3 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 3 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 4 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 4 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DG 19 O6 ? ? A DT 6 A DG 19 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog18 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DG 19 N1 ? ? A DT 6 A DG 19 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog19 hydrog ? ? A DT 6 O2 ? ? ? 1_555 A DA 21 N6 ? ? A DT 6 A DA 21 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog20 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 22 O6 ? ? A DG 8 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 22 N7 ? ? A DG 8 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 9 N7 ? ? ? 1_555 A DG 23 N2 ? ? A DG 9 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DG 23 N1 ? ? A DG 9 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 24 O6 ? ? A DG 10 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 24 N7 ? ? A DG 10 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 11 N7 ? ? ? 1_555 A DG 25 N2 ? ? A DG 11 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 11 O6 ? ? ? 1_555 A DG 25 N1 ? ? A DG 11 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DT 12 O2 ? ? ? 1_555 A DG 25 N1 ? ? A DT 12 A DG 25 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog29 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 25 O6 ? ? A DG 16 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 25 N7 ? ? A DG 16 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DG 17 N7 ? ? ? 1_555 A DG 24 N2 ? ? A DG 17 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DG 17 O6 ? ? ? 1_555 A DG 24 N1 ? ? A DG 17 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? A DG 18 N1 ? ? ? 1_555 A DG 23 O6 ? ? A DG 18 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? A DG 18 N2 ? ? ? 1_555 A DG 23 N7 ? ? A DG 18 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? A DG 19 N7 ? ? ? 1_555 A DG 22 N2 ? ? A DG 19 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? A DG 19 O6 ? ? ? 1_555 A DG 22 N1 ? ? A DG 19 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 5J6U _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DT 15 15 15 DT DT A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DG 17 17 17 DG DG A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DA 20 20 20 DA DA A . n A 1 21 DA 21 21 21 DA DA A . n A 1 22 DG 22 22 22 DG DG A . n A 1 23 DG 23 23 23 DG DG A . n A 1 24 DG 24 24 24 DG DG A . n A 1 25 DG 25 25 25 DG DG A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 3870 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-05-10 2 'Structure model' 1 1 2017-08-30 3 'Structure model' 1 2 2018-03-07 4 'Structure model' 1 3 2018-10-10 5 'Structure model' 1 4 2019-05-08 6 'Structure model' 1 5 2019-09-11 7 'Structure model' 1 6 2019-10-30 8 'Structure model' 1 7 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 5 'Structure model' 'Data collection' 7 6 'Structure model' 'Data collection' 8 7 'Structure model' 'Data collection' 9 7 'Structure model' 'Experimental preparation' 10 8 'Structure model' 'Database references' 11 8 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' struct_conn 3 3 'Structure model' pdbx_entity_src_syn 4 4 'Structure model' citation 5 4 'Structure model' citation_author 6 5 'Structure model' pdbx_nmr_software 7 5 'Structure model' pdbx_seq_map_depositor_info 8 6 'Structure model' pdbx_nmr_spectrometer 9 7 'Structure model' pdbx_nmr_exptl_sample_conditions 10 8 'Structure model' database_2 11 8 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 3 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 4 4 'Structure model' '_citation.country' 5 4 'Structure model' '_citation.journal_abbrev' 6 4 'Structure model' '_citation.journal_id_CSD' 7 4 'Structure model' '_citation.journal_id_ISSN' 8 4 'Structure model' '_citation.journal_volume' 9 4 'Structure model' '_citation.page_first' 10 4 'Structure model' '_citation.page_last' 11 4 'Structure model' '_citation.pdbx_database_id_DOI' 12 4 'Structure model' '_citation.pdbx_database_id_PubMed' 13 4 'Structure model' '_citation.title' 14 4 'Structure model' '_citation.year' 15 4 'Structure model' '_citation_author.identifier_ORCID' 16 5 'Structure model' '_pdbx_nmr_software.name' 17 5 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 18 6 'Structure model' '_pdbx_nmr_spectrometer.model' 19 7 'Structure model' '_pdbx_nmr_exptl_sample_conditions.temperature' 20 7 'Structure model' '_pdbx_nmr_exptl_sample_conditions.temperature_units' 21 8 'Structure model' '_database_2.pdbx_DOI' 22 8 'Structure model' '_database_2.pdbx_database_accession' 23 8 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component 'DNA (25-MER)' _pdbx_nmr_exptl_sample.concentration 2 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling none # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 4 _pdbx_validate_close_contact.auth_atom_id_1 "H1'" _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 DG _pdbx_validate_close_contact.auth_seq_id_1 8 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 "O4'" _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 DG _pdbx_validate_close_contact.auth_seq_id_2 9 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.57 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.42 108.30 3.12 0.30 N 2 1 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.32 122.90 -4.58 0.60 N 3 1 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.13 122.90 -3.77 0.60 N 4 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.00 122.90 -3.90 0.60 N 5 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.53 108.30 3.23 0.30 N 6 1 "C3'" A DT 13 ? ? "C2'" A DT 13 ? ? "C1'" A DT 13 ? ? 96.92 102.40 -5.48 0.80 N 7 1 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 112.55 108.30 4.25 0.30 N 8 1 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.00 122.90 -4.90 0.60 N 9 1 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 118.52 122.90 -4.38 0.60 N 10 1 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.74 122.90 -4.16 0.60 N 11 1 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 110.51 108.30 2.21 0.30 N 12 1 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 111.97 108.30 3.67 0.30 N 13 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.88 108.30 2.58 0.30 N 14 2 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 117.88 122.90 -5.02 0.60 N 15 2 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 118.91 122.90 -3.99 0.60 N 16 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.26 108.30 1.96 0.30 N 17 2 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.66 122.90 -4.24 0.60 N 18 2 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 111.37 108.30 3.07 0.30 N 19 2 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.27 122.90 -4.63 0.60 N 20 2 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 103.54 110.10 -6.56 1.00 N 21 2 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 111.52 108.30 3.22 0.30 N 22 2 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 110.97 108.30 2.67 0.30 N 23 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.29 108.30 2.99 0.30 N 24 3 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.44 122.90 -4.46 0.60 N 25 3 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 118.99 122.90 -3.91 0.60 N 26 3 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.78 122.90 -4.12 0.60 N 27 3 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.15 108.30 1.85 0.30 N 28 3 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.27 122.90 -3.63 0.60 N 29 3 "C3'" A DT 13 ? ? "C2'" A DT 13 ? ? "C1'" A DT 13 ? ? 96.47 102.40 -5.93 0.80 N 30 3 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 111.44 108.30 3.14 0.30 N 31 3 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.65 122.90 -4.25 0.60 N 32 3 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 119.02 122.90 -3.88 0.60 N 33 3 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 112.28 108.30 3.98 0.30 N 34 3 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 111.79 108.30 3.49 0.30 N 35 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.47 108.30 3.17 0.30 N 36 4 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.35 122.90 -4.55 0.60 N 37 4 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.16 122.90 -3.74 0.60 N 38 4 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.84 122.90 -4.06 0.60 N 39 4 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.30 108.30 2.00 0.30 N 40 4 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.12 122.90 -3.78 0.60 N 41 4 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 112.48 108.30 4.18 0.30 N 42 4 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 117.55 122.90 -5.35 0.60 N 43 4 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 111.29 108.30 2.99 0.30 N 44 4 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 111.25 108.30 2.95 0.30 N 45 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.39 108.30 3.09 0.30 N 46 5 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.46 122.90 -4.44 0.60 N 47 5 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.07 122.90 -3.83 0.60 N 48 5 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.19 122.90 -3.71 0.60 N 49 5 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.20 108.30 2.90 0.30 N 50 5 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.28 122.90 -3.62 0.60 N 51 5 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 112.58 108.30 4.28 0.30 N 52 5 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 117.24 122.90 -5.66 0.60 N 53 5 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 119.23 122.90 -3.67 0.60 N 54 5 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 111.07 108.30 2.77 0.30 N 55 5 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 112.16 108.30 3.86 0.30 N 56 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.08 108.30 2.78 0.30 N 57 6 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.40 122.90 -4.50 0.60 N 58 6 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.13 122.90 -3.77 0.60 N 59 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.94 108.30 2.64 0.30 N 60 6 "C3'" A DT 13 ? ? "C2'" A DT 13 ? ? "C1'" A DT 13 ? ? 97.12 102.40 -5.28 0.80 N 61 6 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 112.58 108.30 4.28 0.30 N 62 6 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.03 122.90 -4.87 0.60 N 63 6 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 118.49 122.90 -4.41 0.60 N 64 6 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.71 122.90 -4.19 0.60 N 65 6 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 111.40 108.30 3.10 0.30 N 66 6 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 111.72 108.30 3.42 0.30 N 67 7 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.05 108.30 2.75 0.30 N 68 7 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.41 122.90 -4.49 0.60 N 69 7 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.15 122.90 -3.75 0.60 N 70 7 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.88 122.90 -4.02 0.60 N 71 7 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.45 108.30 2.15 0.30 N 72 7 "C3'" A DT 13 ? ? "C2'" A DT 13 ? ? "C1'" A DT 13 ? ? 96.38 102.40 -6.02 0.80 N 73 7 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 111.83 108.30 3.53 0.30 N 74 7 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.38 122.90 -4.52 0.60 N 75 7 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.12 122.90 -3.78 0.60 N 76 7 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.36 122.90 -4.54 0.60 N 77 7 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 111.55 108.30 3.25 0.30 N 78 7 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 111.54 108.30 3.24 0.30 N 79 8 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.07 108.30 2.77 0.30 N 80 8 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.70 122.90 -4.20 0.60 N 81 8 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.14 122.90 -3.76 0.60 N 82 8 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.26 122.90 -3.64 0.60 N 83 8 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.66 108.30 3.36 0.30 N 84 8 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.99 122.90 -3.91 0.60 N 85 8 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 112.90 108.30 4.60 0.30 N 86 8 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 117.47 122.90 -5.43 0.60 N 87 8 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 119.09 122.90 -3.81 0.60 N 88 8 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 111.17 108.30 2.87 0.30 N 89 8 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 111.89 108.30 3.59 0.30 N 90 9 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.69 108.30 2.39 0.30 N 91 9 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 117.93 122.90 -4.97 0.60 N 92 9 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.06 122.90 -3.84 0.60 N 93 9 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.11 122.90 -3.79 0.60 N 94 9 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.16 108.30 2.86 0.30 N 95 9 "C3'" A DT 13 ? ? "C2'" A DT 13 ? ? "C1'" A DT 13 ? ? 96.95 102.40 -5.45 0.80 N 96 9 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 112.45 108.30 4.15 0.30 N 97 9 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.07 122.90 -4.83 0.60 N 98 9 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 118.72 122.90 -4.18 0.60 N 99 9 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.78 122.90 -4.12 0.60 N 100 9 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 103.80 110.10 -6.30 1.00 N 101 9 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 111.21 108.30 2.91 0.30 N 102 9 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 111.46 108.30 3.16 0.30 N 103 10 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.89 108.30 2.59 0.30 N 104 10 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 117.91 122.90 -4.99 0.60 N 105 10 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 118.99 122.90 -3.91 0.60 N 106 10 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.56 108.30 3.26 0.30 N 107 10 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.27 122.90 -3.63 0.60 N 108 10 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 112.45 108.30 4.15 0.30 N 109 10 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 117.53 122.90 -5.37 0.60 N 110 10 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.18 122.90 -3.72 0.60 N 111 10 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.69 122.90 -4.21 0.60 N 112 10 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 111.03 108.30 2.73 0.30 N 113 10 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 111.86 108.30 3.56 0.30 N 114 11 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.37 108.30 3.07 0.30 N 115 11 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 117.96 122.90 -4.94 0.60 N 116 11 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 118.94 122.90 -3.96 0.60 N 117 11 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.24 122.90 -3.66 0.60 N 118 11 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.85 108.30 2.55 0.30 N 119 11 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 111.32 108.30 3.02 0.30 N 120 11 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.17 122.90 -4.73 0.60 N 121 11 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.26 122.90 -3.64 0.60 N 122 11 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.80 122.90 -4.10 0.60 N 123 11 "C1'" A DG 19 ? ? "O4'" A DG 19 ? ? "C4'" A DG 19 ? ? 103.70 110.10 -6.40 1.00 N 124 11 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 110.99 108.30 2.69 0.30 N 125 11 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 111.01 108.30 2.71 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 11 ? ? 0.059 'SIDE CHAIN' 2 1 DG A 23 ? ? 0.048 'SIDE CHAIN' 3 2 DG A 11 ? ? 0.047 'SIDE CHAIN' 4 2 DG A 19 ? ? 0.049 'SIDE CHAIN' 5 2 DG A 23 ? ? 0.050 'SIDE CHAIN' 6 3 DG A 23 ? ? 0.056 'SIDE CHAIN' 7 4 DG A 19 ? ? 0.061 'SIDE CHAIN' 8 4 DG A 23 ? ? 0.053 'SIDE CHAIN' 9 5 DG A 11 ? ? 0.054 'SIDE CHAIN' 10 5 DG A 19 ? ? 0.051 'SIDE CHAIN' 11 5 DG A 23 ? ? 0.055 'SIDE CHAIN' 12 6 DG A 11 ? ? 0.047 'SIDE CHAIN' 13 6 DG A 19 ? ? 0.048 'SIDE CHAIN' 14 7 DG A 23 ? ? 0.056 'SIDE CHAIN' 15 8 DG A 11 ? ? 0.056 'SIDE CHAIN' 16 8 DG A 19 ? ? 0.062 'SIDE CHAIN' 17 8 DG A 23 ? ? 0.055 'SIDE CHAIN' 18 9 DG A 11 ? ? 0.051 'SIDE CHAIN' 19 9 DG A 19 ? ? 0.065 'SIDE CHAIN' 20 9 DG A 23 ? ? 0.051 'SIDE CHAIN' 21 10 DG A 11 ? ? 0.063 'SIDE CHAIN' 22 10 DG A 19 ? ? 0.063 'SIDE CHAIN' 23 10 DG A 23 ? ? 0.048 'SIDE CHAIN' 24 11 DG A 11 ? ? 0.049 'SIDE CHAIN' 25 11 DG A 23 ? ? 0.053 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5J6U 'double helix' 5J6U 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 6 1_555 A DA 21 1_555 5.452 -3.473 -1.408 19.480 -30.907 -57.527 1 A_DT6:DA21_A A 6 ? A 21 ? ? ? 1 A DG 8 1_555 A DG 22 1_555 1.850 3.215 -0.273 0.726 0.578 -92.323 2 A_DG8:DG22_A A 8 ? A 22 ? 6 3 1 A DG 4 1_555 A DG 19 1_555 -1.592 -3.391 -0.015 -0.848 1.702 90.904 3 A_DG4:DG19_A A 4 ? A 19 ? 6 3 1 A DG 9 1_555 A DG 23 1_555 -0.921 -3.739 0.208 -3.416 -6.157 93.068 4 A_DG9:DG23_A A 9 ? A 23 ? 6 3 1 A DG 3 1_555 A DG 18 1_555 1.029 3.787 -0.034 0.042 -2.849 -90.624 5 A_DG3:DG18_A A 3 ? A 18 ? 6 3 1 A DG 16 1_555 A DG 25 1_555 2.054 3.154 0.058 0.130 0.409 -91.937 6 A_DG16:DG25_A A 16 ? A 25 ? 6 3 1 A DG 10 1_555 A DG 24 1_555 1.282 3.694 0.332 0.120 -5.614 -91.883 7 A_DG10:DG24_A A 10 ? A 24 ? 6 3 1 A DG 2 1_555 A DG 17 1_555 -1.203 -3.522 -0.283 4.963 1.342 96.993 8 A_DG2:DG17_A A 2 ? A 17 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 6 1_555 A DA 21 1_555 A DG 8 1_555 A DG 22 1_555 -0.451 0.545 -2.279 0.668 3.032 36.168 1.168 0.660 -2.236 4.872 -1.074 36.297 1 AA_DT6DG8:DG22DA21_AA A 6 ? A 21 ? A 8 ? A 22 ? 1 A DG 8 1_555 A DG 22 1_555 A DG 4 1_555 A DG 19 1_555 -0.913 -3.837 -0.168 0.054 2.391 177.124 -1.919 0.456 -0.170 1.196 -0.027 177.125 2 AA_DG8DG4:DG19DG22_AA A 8 ? A 22 ? A 4 ? A 19 ? 1 A DG 4 1_555 A DG 19 1_555 A DG 9 1_555 A DG 23 1_555 1.162 -2.822 2.280 149.944 94.438 26.355 -1.896 0.188 0.013 47.794 -75.885 177.279 3 AA_DG4DG9:DG23DG19_AA A 4 ? A 19 ? A 9 ? A 23 ? 1 A DG 9 1_555 A DG 23 1_555 A DG 3 1_555 A DG 18 1_555 1.024 3.815 -0.028 0.481 -1.588 -178.106 -1.908 0.512 -0.027 0.794 0.241 -178.106 4 AA_DG9DG3:DG18DG23_AA A 9 ? A 23 ? A 3 ? A 18 ? 1 A DG 16 1_555 A DG 25 1_555 A DG 10 1_555 A DG 24 1_555 -0.891 -3.040 1.126 169.164 -45.256 126.500 -1.456 0.686 0.972 -22.695 -84.834 177.801 5 AA_DG16DG10:DG24DG25_AA A 16 ? A 25 ? A 10 ? A 24 ? 1 A DG 10 1_555 A DG 24 1_555 A DG 2 1_555 A DG 17 1_555 -2.104 -3.540 0.149 -4.138 -2.538 179.866 -1.770 1.052 0.149 -1.269 2.069 179.866 6 AA_DG10DG2:DG17DG24_AA A 10 ? A 24 ? A 2 ? A 17 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/H005692 1 'Wellcome Trust' 'United Kingdom' 083796/Z/07/Z 2 #