HEADER METAL BINDING PROTEIN/TRANSFERASE 07-APR-16 5J8H TITLE STRUCTURE OF CALMODULIN IN A COMPLEX WITH A PEPTIDE DERIVED FROM A TITLE 2 CALMODULIN-DEPENDENT KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAM; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: EUKARYOTIC ELONGATION FACTOR 2 KINASE; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 74-100; COMPND 10 SYNONYM: EEF-2K,CALCIUM/CALMODULIN-DEPENDENT EUKARYOTIC ELONGATION COMPND 11 FACTOR 2 KINASE; COMPND 12 EC: 2.7.11.20; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CALM1, CALM, CAM, CAM1, CALM2, CAM2, CAMB, CALM3, CALML2, SOURCE 6 CAM3, CAMC, CAMIII; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: EEF2K; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS CALMODULIN EEF2K COMPLEX KINASE, METAL BINDING PROTEIN-TRANSFERASE KEYWDS 2 COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.ALPHONSE,K.LEE,A.PISERCHIO,C.D.J.TAVARES,D.H.GILES,R.M.WELLMANN, AUTHOR 2 K.N.DALBY,R.GHOSE REVDAT 5 14-JUN-23 5J8H 1 REMARK REVDAT 4 18-DEC-19 5J8H 1 REMARK REVDAT 3 20-SEP-17 5J8H 1 COMPND JRNL REVDAT 2 21-SEP-16 5J8H 1 JRNL REVDAT 1 07-SEP-16 5J8H 0 JRNL AUTH K.LEE,S.ALPHONSE,A.PISERCHIO,C.D.TAVARES,D.H.GILES, JRNL AUTH 2 R.M.WELLMANN,K.N.DALBY,R.GHOSE JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF EUKARYOTIC JRNL TITL 2 ELONGATION FACTOR 2 KINASE BY CALMODULIN. JRNL REF STRUCTURE V. 24 1441 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27499441 JRNL DOI 10.1016/J.STR.2016.06.015 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR_NIH 2.4 REMARK 3 AUTHORS : NIH C.D. SCHWIETERS, J.J. KUSZEWSKI, N. TJANDRA REMARK 3 AND G.M. CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220064. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308.15; 308.15; 308.15; 308.15 REMARK 210 PH : 6.8; 6.8; 6.8; 6.8 REMARK 210 IONIC STRENGTH : 20 MM BISTRIS 150 MM POTASSIUM REMARK 210 CHLORIDE 10 MM CALCIUM CHLORIDE; REMARK 210 20 MM BISTRIS 150 MM POTASSIUM REMARK 210 CHLORIDE 10 MM CALCIUM CHLORIDE; REMARK 210 20 MM BISTRIS 150 MM POTASSIUM REMARK 210 CHLORIDE 10 MM CALCIUM CHLORIDE; REMARK 210 20 MM BISTRIS 150 MM POTASSIUM REMARK 210 CHLORIDE 10 MM CALCIUM CHLORIDE REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 320 UM [U-99% 13C; U-99% 15N] REMARK 210 CALMODULIN, 320 UM EEF2K_74-100, REMARK 210 95% H2O/5% D2O; 595 UM [U-99% REMARK 210 13C; U-99% 15N] EEF2K_74-100, REMARK 210 595 UM CALMODULIN, 95% H2O/5% REMARK 210 D2O; 320 UM [U-99% 13C; U-99% REMARK 210 15N] CALMODULIN, 320 UM EEF2K_74- REMARK 210 100, 100% D2O; 320 UM [U-99% 13C; REMARK 210 U-99% 15N] EEF2K_74-100, 320 UM REMARK 210 CALMODULIN, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HN(CA)CO; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D H(CCO) REMARK 210 NH; 3D C(CO)NH; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC 13C-FILTERED; 3D 1H- REMARK 210 13C NOESY ALIPHATIC 13C FILTERED REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 900 MHZ; 500 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.1, VNMR, NMRPIPE, REMARK 210 NMRVIEW, ARIA 2.3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 29 OE1 GLU A 45 1.59 REMARK 500 OE2 GLU A 84 HZ3 LYS B 93 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 77 -74.63 -142.16 REMARK 500 1 ASP A 80 -55.06 176.65 REMARK 500 1 LYS A 115 86.60 51.93 REMARK 500 1 ASN B 77 -35.79 -132.29 REMARK 500 1 HIS B 80 -59.69 71.16 REMARK 500 2 ASP A 78 124.57 84.66 REMARK 500 2 ASP A 80 -19.18 -141.24 REMARK 500 2 SER A 81 -55.78 75.50 REMARK 500 2 LYS A 115 88.25 47.58 REMARK 500 2 ASN B 77 82.13 67.99 REMARK 500 2 HIS B 94 123.65 83.04 REMARK 500 2 PRO B 98 85.22 -62.35 REMARK 500 3 ASP A 2 12.28 -154.38 REMARK 500 3 ASP A 20 96.28 -69.97 REMARK 500 3 LYS A 77 -82.41 -124.84 REMARK 500 3 THR A 79 57.87 165.41 REMARK 500 3 ASP A 80 92.01 62.45 REMARK 500 3 LYS A 115 90.74 57.58 REMARK 500 3 ALA B 76 -74.77 -78.87 REMARK 500 3 ASN B 77 17.29 -146.71 REMARK 500 4 ASP A 2 -68.91 72.59 REMARK 500 4 GLN A 3 74.88 54.76 REMARK 500 4 ASP A 56 99.30 -68.04 REMARK 500 4 LYS A 77 -73.97 -131.36 REMARK 500 4 SER A 81 -10.30 83.58 REMARK 500 4 HIS B 94 85.49 52.50 REMARK 500 4 PRO B 96 -152.76 -80.47 REMARK 500 4 ASP B 97 -178.97 66.78 REMARK 500 5 ASP A 2 -61.07 68.66 REMARK 500 5 ASP A 80 131.28 69.50 REMARK 500 5 PHE B 79 163.78 67.05 REMARK 500 5 HIS B 80 -36.14 70.74 REMARK 500 5 PRO B 96 76.54 -68.43 REMARK 500 5 ASP B 97 137.89 -170.47 REMARK 500 5 TRP B 99 -39.63 -140.72 REMARK 500 6 LYS A 77 95.07 60.13 REMARK 500 6 ASP A 78 123.59 79.31 REMARK 500 6 PRO B 96 44.77 -101.22 REMARK 500 6 ASP B 97 135.86 74.08 REMARK 500 6 TRP B 99 -46.52 71.23 REMARK 500 7 LYS A 115 94.78 57.15 REMARK 500 7 ASN B 77 35.69 -153.94 REMARK 500 7 SER B 78 -71.83 -41.17 REMARK 500 7 PHE B 79 61.40 -107.97 REMARK 500 8 ASP A 78 10.47 80.70 REMARK 500 8 ASP A 80 82.70 80.71 REMARK 500 8 GLU A 82 -58.09 -141.51 REMARK 500 8 PHE A 92 -60.93 -93.86 REMARK 500 8 PHE B 79 -87.98 49.59 REMARK 500 9 LYS A 77 -28.04 68.44 REMARK 500 REMARK 500 THIS ENTRY HAS 125 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP A 22 OD1 128.3 REMARK 620 3 ASP A 24 OD1 81.7 93.7 REMARK 620 4 THR A 26 O 77.3 154.3 93.1 REMARK 620 5 GLU A 31 OE1 108.1 83.7 169.2 85.0 REMARK 620 6 GLU A 31 OE2 76.9 72.1 136.9 117.5 52.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 58 OD1 75.8 REMARK 620 3 ASP A 58 OD2 122.4 50.7 REMARK 620 4 ASN A 60 OD1 73.2 77.0 108.4 REMARK 620 5 THR A 62 O 72.0 141.6 165.7 74.1 REMARK 620 6 ASP A 64 OD1 154.5 111.4 75.9 84.4 90.5 REMARK 620 7 GLU A 67 OE1 108.4 134.7 97.4 148.2 76.4 84.3 REMARK 620 8 GLU A 67 OE2 86.1 84.9 71.2 155.2 112.7 118.3 51.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30063 RELATED DB: BMRB DBREF 5J8H A 1 148 UNP P62158 CALM_HUMAN 2 149 DBREF 5J8H B 74 100 UNP O00418 EF2K_HUMAN 74 100 SEQRES 1 A 148 ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 A 148 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 3 A 148 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU SEQRES 4 A 148 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE SEQRES 5 A 148 ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE SEQRES 6 A 148 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS ASP SEQRES 7 A 148 THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL SEQRES 8 A 148 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU SEQRES 9 A 148 LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR SEQRES 10 A 148 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE SEQRES 11 A 148 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN SEQRES 12 A 148 MET MET THR ALA LYS SEQRES 1 B 27 SER PRO ALA ASN SER PHE HIS PHE LYS GLU ALA TRP LYS SEQRES 2 B 27 HIS ALA ILE GLN LYS ALA LYS HIS MET PRO ASP PRO TRP SEQRES 3 B 27 ALA HET CA A 501 1 HET CA A 502 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) HELIX 1 AA1 THR A 5 ASP A 20 1 16 HELIX 2 AA2 THR A 28 GLY A 40 1 13 HELIX 3 AA3 THR A 44 ASP A 56 1 13 HELIX 4 AA4 PHE A 65 LYS A 77 1 13 HELIX 5 AA5 GLU A 82 ASP A 93 1 12 HELIX 6 AA6 SER A 101 GLY A 113 1 13 HELIX 7 AA7 THR A 117 ASP A 129 1 13 HELIX 8 AA8 TYR A 138 THR A 146 1 9 HELIX 9 AA9 HIS B 80 ALA B 92 1 13 SHEET 1 AA1 2 THR A 26 ILE A 27 0 SHEET 2 AA1 2 ILE A 63 ASP A 64 -1 O ILE A 63 N ILE A 27 SHEET 1 AA2 2 TYR A 99 ILE A 100 0 SHEET 2 AA2 2 VAL A 136 ASN A 137 -1 O VAL A 136 N ILE A 100 LINK OD1 ASP A 20 CA CA A 501 1555 1555 2.31 LINK OD1 ASP A 22 CA CA A 501 1555 1555 2.42 LINK OD1 ASP A 24 CA CA A 501 1555 1555 2.30 LINK O THR A 26 CA CA A 501 1555 1555 2.42 LINK OE1 GLU A 31 CA CA A 501 1555 1555 2.45 LINK OE2 GLU A 31 CA CA A 501 1555 1555 2.44 LINK OD1 ASP A 56 CA CA A 502 1555 1555 2.32 LINK OD1 ASP A 58 CA CA A 502 1555 1555 2.42 LINK OD2 ASP A 58 CA CA A 502 1555 1555 2.53 LINK OD1 ASN A 60 CA CA A 502 1555 1555 2.56 LINK O THR A 62 CA CA A 502 1555 1555 2.46 LINK OD1 ASP A 64 CA CA A 502 1555 1555 2.33 LINK OE1 GLU A 67 CA CA A 502 1555 1555 2.35 LINK OE2 GLU A 67 CA CA A 502 1555 1555 2.57 SITE 1 AC1 5 ASP A 20 ASP A 22 ASP A 24 THR A 26 SITE 2 AC1 5 GLU A 31 SITE 1 AC2 6 ASP A 56 ASP A 58 ASN A 60 THR A 62 SITE 2 AC2 6 ASP A 64 GLU A 67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1