data_5J8P # _entry.id 5J8P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.354 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5J8P pdb_00005j8p 10.2210/pdb5j8p/pdb WWPDB D_1000219856 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5J8P _pdbx_database_status.recvd_initial_deposition_date 2016-04-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pan, M.' 1 'Gao, S.' 2 'Zheng, Y.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure of Lys27-linked diubiquitin' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pan, M.' 1 ? primary 'Gao, S.' 2 ? primary 'Zheng, Y.' 3 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 109.16 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5J8P _cell.details ? _cell.formula_units_Z ? _cell.length_a 44.828 _cell.length_a_esd ? _cell.length_b 63.411 _cell.length_b_esd ? _cell.length_c 52.844 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ubiquitin 8576.831 1 ? ? ? ? 2 polymer syn D-ubiquitin 8565.770 1 ? ? ? ? 3 non-polymer nat 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 106 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG A ? 2 'polypeptide(D)' no yes ;(DNE)(DGN)(DIL)(DPN)(DVA)(DLY)(DTH)(DLE)(DTH)G(DLY)(DTH)(DIL)(DTH)(DLE)(DGL) (DVA)(DGL)(DPR)(DSN)(DAS)(DTH)(DIL)(DGL)(DSG)(DVA)(DLY)(DAL)(DLY)(DIL)(DGN)(DAS) (DLY)(DGL)G(DIL)(DPR)(DPR)(DAS)(DGN)(DGN)(DAR)(DLE)(DIL)(DPN)(DAL)G(DLY)(DGN) (DLE)(DGL)(DAS)G(DAR)(DTH)(DLE)(DSN)(DAS)(DTY)(DSG)(DIL)(DGN)(DLY)(DGL)(DSN) (DTH)(DLE)(DHI)(DLE)(DVA)(DLE)(DAR)(DLE)(DAR)G(DAL) ; LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ILE n 1 4 PHE n 1 5 VAL n 1 6 LYS n 1 7 THR n 1 8 LEU n 1 9 THR n 1 10 GLY n 1 11 LYS n 1 12 THR n 1 13 ILE n 1 14 THR n 1 15 LEU n 1 16 GLU n 1 17 VAL n 1 18 GLU n 1 19 PRO n 1 20 SER n 1 21 ASP n 1 22 THR n 1 23 ILE n 1 24 GLU n 1 25 ASN n 1 26 VAL n 1 27 LYS n 1 28 ALA n 1 29 LYS n 1 30 ILE n 1 31 GLN n 1 32 ASP n 1 33 LYS n 1 34 GLU n 1 35 GLY n 1 36 ILE n 1 37 PRO n 1 38 PRO n 1 39 ASP n 1 40 GLN n 1 41 GLN n 1 42 ARG n 1 43 LEU n 1 44 ILE n 1 45 PHE n 1 46 ALA n 1 47 GLY n 1 48 LYS n 1 49 GLN n 1 50 LEU n 1 51 GLU n 1 52 ASP n 1 53 GLY n 1 54 ARG n 1 55 THR n 1 56 LEU n 1 57 SER n 1 58 ASP n 1 59 TYR n 1 60 ASN n 1 61 ILE n 1 62 GLN n 1 63 LYS n 1 64 GLU n 1 65 SER n 1 66 THR n 1 67 LEU n 1 68 HIS n 1 69 LEU n 1 70 VAL n 1 71 LEU n 1 72 ARG n 1 73 LEU n 1 74 ARG n 1 75 GLY n 1 76 GLY n 2 1 DNE n 2 2 DGN n 2 3 DIL n 2 4 DPN n 2 5 DVA n 2 6 DLY n 2 7 DTH n 2 8 DLE n 2 9 DTH n 2 10 GLY n 2 11 DLY n 2 12 DTH n 2 13 DIL n 2 14 DTH n 2 15 DLE n 2 16 DGL n 2 17 DVA n 2 18 DGL n 2 19 DPR n 2 20 DSN n 2 21 DAS n 2 22 DTH n 2 23 DIL n 2 24 DGL n 2 25 DSG n 2 26 DVA n 2 27 DLY n 2 28 DAL n 2 29 DLY n 2 30 DIL n 2 31 DGN n 2 32 DAS n 2 33 DLY n 2 34 DGL n 2 35 GLY n 2 36 DIL n 2 37 DPR n 2 38 DPR n 2 39 DAS n 2 40 DGN n 2 41 DGN n 2 42 DAR n 2 43 DLE n 2 44 DIL n 2 45 DPN n 2 46 DAL n 2 47 GLY n 2 48 DLY n 2 49 DGN n 2 50 DLE n 2 51 DGL n 2 52 DAS n 2 53 GLY n 2 54 DAR n 2 55 DTH n 2 56 DLE n 2 57 DSN n 2 58 DAS n 2 59 DTY n 2 60 DSG n 2 61 DIL n 2 62 DGN n 2 63 DLY n 2 64 DGL n 2 65 DSN n 2 66 DTH n 2 67 DLE n 2 68 DHI n 2 69 DLE n 2 70 DVA n 2 71 DLE n 2 72 DAR n 2 73 DLE n 2 74 DAR n 2 75 GLY n 2 76 DAL n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 76 'Homo sapiens' Human 9606 ? 2 1 sample 1 76 'Homo sapiens' Human 9606 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP UBB_HUMAN P0CG47 ? 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 2 PDB 5J8P 5J8P ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5J8P A 1 ? 76 ? P0CG47 1 ? 76 ? 1 76 2 2 5J8P B 1 ? 76 ? 5J8P 1 ? 76 ? 1 76 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DAR 'D-peptide linking' . D-ARGININE ? 'C6 H15 N4 O2 1' 175.209 DAS 'D-peptide linking' . 'D-ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DGL 'D-peptide linking' . 'D-GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 DGN 'D-peptide linking' . D-GLUTAMINE ? 'C5 H10 N2 O3' 146.144 DHI 'D-peptide linking' . D-HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 DIL 'D-peptide linking' . D-ISOLEUCINE ? 'C6 H13 N O2' 131.173 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DLY 'D-peptide linking' . D-LYSINE ? 'C6 H14 N2 O2' 146.188 DNE 'D-peptide linking' . D-NORLEUCINE ? 'C6 H13 N O2' 131.173 DPN 'D-peptide linking' . D-PHENYLALANINE ? 'C9 H11 N O2' 165.189 DPR 'D-peptide linking' . D-PROLINE ? 'C5 H9 N O2' 115.130 DSG 'D-peptide linking' . D-ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 DTH 'D-peptide linking' . D-THREONINE ? 'C4 H9 N O3' 119.119 DTY 'D-peptide linking' . D-TYROSINE ? 'C9 H11 N O3' 181.189 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5J8P _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2M magnesium acetate tetrahydrate, 0.1M sodium cacodylate trihydrate, pH 6.5, 20% PEG 8000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-06-04 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5J8P _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.554 _reflns.d_resolution_low 31.706 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13686 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 67.91 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5J8P _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.554 _refine.ls_d_res_low 31.706 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13686 _refine.ls_number_reflns_R_free 648 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 67.91 _refine.ls_percent_reflns_R_free 4.73 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2368 _refine.ls_R_factor_R_free 0.2946 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2339 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 38.12 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.16 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1212 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 106 _refine_hist.number_atoms_total 1319 _refine_hist.d_res_high 1.554 _refine_hist.d_res_low 31.706 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.012 ? 1224 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.466 ? 1652 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 18.272 ? 628 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.108 ? 195 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.014 ? 219 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5539 1.6739 . . 72 1501 39.00 . . . 0.3002 . 0.2279 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6739 1.8423 . . 97 1995 52.00 . . . 0.3000 . 0.2478 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8423 2.1089 . . 127 2659 69.00 . . . 0.2649 . 0.2330 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1089 2.6568 . . 172 3401 89.00 . . . 0.2960 . 0.2409 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6568 31.7121 . . 180 3482 90.00 . . . 0.3017 . 0.2287 . . . . . . . . . . # _struct.entry_id 5J8P _struct.title 'Lys27-linked diubiquitin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5J8P _struct_keywords.text 'racemic crystal, synthetic protein, ubiquitin chains, buried isopeptide linkage, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 22 ? GLY A 35 ? THR A 22 GLY A 35 1 ? 14 HELX_P HELX_P2 AA2 PRO A 37 ? ASP A 39 ? PRO A 37 ASP A 39 5 ? 3 HELX_P HELX_P3 AA3 LEU A 56 ? ASN A 60 ? LEU A 56 ASN A 60 5 ? 5 HELX_P HELX_P4 AA4 DTH B 22 ? DGL B 34 ? DTH B 22 DGL B 34 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DNE 1 C ? ? ? 1_555 B DGN 2 N ? ? B DNE 1 B DGN 2 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale2 covale both ? B DGN 2 C ? ? ? 1_555 B DIL 3 N ? ? B DGN 2 B DIL 3 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale3 covale both ? B DIL 3 C ? ? ? 1_555 B DPN 4 N ? ? B DIL 3 B DPN 4 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? B DPN 4 C ? ? ? 1_555 B DVA 5 N ? ? B DPN 4 B DVA 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? B DVA 5 C ? ? ? 1_555 B DLY 6 N ? ? B DVA 5 B DLY 6 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale both ? B DLY 6 C ? ? ? 1_555 B DTH 7 N ? ? B DLY 6 B DTH 7 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale7 covale both ? B DTH 7 C ? ? ? 1_555 B DLE 8 N ? ? B DTH 7 B DLE 8 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale8 covale both ? B DLE 8 C ? ? ? 1_555 B DTH 9 N ? ? B DLE 8 B DTH 9 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale both ? B DTH 9 C ? ? ? 1_555 B GLY 10 N ? ? B DTH 9 B GLY 10 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale10 covale both ? B GLY 10 C ? ? ? 1_555 B DLY 11 N ? ? B GLY 10 B DLY 11 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale11 covale both ? B DLY 11 C ? ? ? 1_555 B DTH 12 N ? ? B DLY 11 B DTH 12 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale12 covale both ? B DTH 12 C ? ? ? 1_555 B DIL 13 N ? ? B DTH 12 B DIL 13 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale13 covale both ? B DIL 13 C ? ? ? 1_555 B DTH 14 N ? ? B DIL 13 B DTH 14 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale14 covale both ? B DTH 14 C ? ? ? 1_555 B DLE 15 N ? ? B DTH 14 B DLE 15 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale15 covale both ? B DLE 15 C ? ? ? 1_555 B DGL 16 N ? ? B DLE 15 B DGL 16 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale16 covale both ? B DGL 16 C ? ? ? 1_555 B DVA 17 N ? ? B DGL 16 B DVA 17 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale17 covale both ? B DVA 17 C ? ? ? 1_555 B DGL 18 N ? ? B DVA 17 B DGL 18 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale18 covale both ? B DGL 18 C ? ? ? 1_555 B DPR 19 N ? ? B DGL 18 B DPR 19 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale19 covale both ? B DPR 19 C ? ? ? 1_555 B DSN 20 N ? ? B DPR 19 B DSN 20 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale20 covale both ? B DSN 20 C ? ? ? 1_555 B DAS 21 N ? ? B DSN 20 B DAS 21 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale21 covale both ? B DAS 21 C ? ? ? 1_555 B DTH 22 N ? ? B DAS 21 B DTH 22 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale22 covale both ? B DTH 22 C ? ? ? 1_555 B DIL 23 N ? ? B DTH 22 B DIL 23 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale23 covale both ? B DIL 23 C ? ? ? 1_555 B DGL 24 N ? ? B DIL 23 B DGL 24 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale24 covale both ? B DGL 24 C ? ? ? 1_555 B DSG 25 N ? ? B DGL 24 B DSG 25 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale25 covale both ? B DSG 25 C ? ? ? 1_555 B DVA 26 N ? ? B DSG 25 B DVA 26 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale26 covale both ? B DVA 26 C ? ? ? 1_555 B DLY 27 N ? ? B DVA 26 B DLY 27 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale27 covale both ? B DLY 27 C ? ? ? 1_555 B DAL 28 N ? ? B DLY 27 B DAL 28 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale28 covale both ? B DAL 28 C ? ? ? 1_555 B DLY 29 N ? ? B DAL 28 B DLY 29 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale29 covale both ? B DLY 29 C ? ? ? 1_555 B DIL 30 N ? ? B DLY 29 B DIL 30 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale30 covale both ? B DIL 30 C ? ? ? 1_555 B DGN 31 N ? ? B DIL 30 B DGN 31 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale31 covale both ? B DGN 31 C ? ? ? 1_555 B DAS 32 N ? ? B DGN 31 B DAS 32 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale32 covale both ? B DAS 32 C ? ? ? 1_555 B DLY 33 N ? ? B DAS 32 B DLY 33 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale33 covale both ? B DLY 33 C ? ? ? 1_555 B DGL 34 N ? ? B DLY 33 B DGL 34 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale34 covale both ? B DGL 34 C ? ? ? 1_555 B GLY 35 N ? ? B DGL 34 B GLY 35 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale35 covale both ? B GLY 35 C ? ? ? 1_555 B DIL 36 N ? ? B GLY 35 B DIL 36 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale36 covale both ? B DIL 36 C ? ? ? 1_555 B DPR 37 N ? ? B DIL 36 B DPR 37 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale37 covale both ? B DPR 37 C ? ? ? 1_555 B DPR 38 N ? ? B DPR 37 B DPR 38 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale38 covale both ? B DPR 38 C ? ? ? 1_555 B DAS 39 N ? ? B DPR 38 B DAS 39 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale39 covale both ? B DAS 39 C ? ? ? 1_555 B DGN 40 N ? ? B DAS 39 B DGN 40 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale40 covale both ? B DGN 40 C ? ? ? 1_555 B DGN 41 N ? ? B DGN 40 B DGN 41 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale41 covale both ? B DGN 41 C ? ? ? 1_555 B DAR 42 N ? ? B DGN 41 B DAR 42 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale42 covale both ? B DAR 42 C ? ? ? 1_555 B DLE 43 N ? ? B DAR 42 B DLE 43 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale43 covale both ? B DLE 43 C ? ? ? 1_555 B DIL 44 N ? ? B DLE 43 B DIL 44 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale44 covale both ? B DIL 44 C ? ? ? 1_555 B DPN 45 N ? ? B DIL 44 B DPN 45 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale45 covale both ? B DPN 45 C ? ? ? 1_555 B DAL 46 N ? ? B DPN 45 B DAL 46 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale46 covale both ? B DAL 46 C ? ? ? 1_555 B GLY 47 N ? ? B DAL 46 B GLY 47 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale47 covale both ? B GLY 47 C ? ? ? 1_555 B DLY 48 N ? ? B GLY 47 B DLY 48 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale48 covale both ? B DLY 48 C ? ? ? 1_555 B DGN 49 N ? ? B DLY 48 B DGN 49 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale49 covale both ? B DGN 49 C ? ? ? 1_555 B DLE 50 N ? ? B DGN 49 B DLE 50 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale50 covale both ? B DLE 50 C ? ? ? 1_555 B DGL 51 N ? ? B DLE 50 B DGL 51 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale51 covale both ? B DGL 51 C ? ? ? 1_555 B DAS 52 N ? ? B DGL 51 B DAS 52 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale52 covale both ? B DAS 52 C ? ? ? 1_555 B GLY 53 N ? ? B DAS 52 B GLY 53 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale53 covale both ? B GLY 53 C ? ? ? 1_555 B DAR 54 N ? ? B GLY 53 B DAR 54 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale54 covale both ? B DAR 54 C ? ? ? 1_555 B DTH 55 N ? ? B DAR 54 B DTH 55 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale55 covale both ? B DTH 55 C ? ? ? 1_555 B DLE 56 N ? ? B DTH 55 B DLE 56 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale56 covale both ? B DLE 56 C ? ? ? 1_555 B DSN 57 N ? ? B DLE 56 B DSN 57 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale57 covale both ? B DSN 57 C ? ? ? 1_555 B DAS 58 N ? ? B DSN 57 B DAS 58 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale58 covale both ? B DAS 58 C ? ? ? 1_555 B DTY 59 N ? ? B DAS 58 B DTY 59 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale59 covale both ? B DTY 59 C ? ? ? 1_555 B DSG 60 N ? ? B DTY 59 B DSG 60 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale60 covale both ? B DSG 60 C ? ? ? 1_555 B DIL 61 N ? ? B DSG 60 B DIL 61 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale61 covale both ? B DIL 61 C ? ? ? 1_555 B DGN 62 N ? ? B DIL 61 B DGN 62 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale62 covale both ? B DGN 62 C ? ? ? 1_555 B DLY 63 N ? ? B DGN 62 B DLY 63 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale63 covale both ? B DLY 63 C ? ? ? 1_555 B DGL 64 N ? ? B DLY 63 B DGL 64 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale64 covale both ? B DGL 64 C ? ? ? 1_555 B DSN 65 N ? ? B DGL 64 B DSN 65 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale65 covale both ? B DSN 65 C ? ? ? 1_555 B DTH 66 N ? ? B DSN 65 B DTH 66 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale66 covale both ? B DTH 66 C ? ? ? 1_555 B DLE 67 N ? ? B DTH 66 B DLE 67 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale67 covale both ? B DLE 67 C ? ? ? 1_555 B DHI 68 N ? ? B DLE 67 B DHI 68 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale68 covale both ? B DHI 68 C ? ? ? 1_555 B DLE 69 N ? ? B DHI 68 B DLE 69 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale69 covale both ? B DLE 69 C ? ? ? 1_555 B DVA 70 N ? ? B DLE 69 B DVA 70 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale70 covale both ? B DVA 70 C ? ? ? 1_555 B DLE 71 N ? ? B DVA 70 B DLE 71 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale71 covale both ? B DLE 71 C ? ? ? 1_555 B DAR 72 N ? ? B DLE 71 B DAR 72 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale72 covale both ? B DAR 72 C ? ? ? 1_555 B DLE 73 N ? ? B DAR 72 B DLE 73 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale73 covale both ? B DLE 73 C ? ? ? 1_555 B DAR 74 N ? ? B DLE 73 B DAR 74 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale74 covale both ? B DAR 74 C ? ? ? 1_555 B GLY 75 N ? ? B DAR 74 B GLY 75 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale75 covale both ? B GLY 75 C ? ? ? 1_555 B DAL 76 N ? ? B GLY 75 B DAL 76 1_555 ? ? ? ? ? ? ? 1.346 ? ? metalc1 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 234 B MG 101 1_555 ? ? ? ? ? ? ? 2.597 ? ? metalc2 metalc ? ? B DTH 66 O ? ? ? 1_555 C MG . MG ? ? B DTH 66 B MG 101 1_555 ? ? ? ? ? ? ? 2.879 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? B MG 101 B HOH 229 1_555 ? ? ? ? ? ? ? 2.683 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 12 ? GLU A 16 ? THR A 12 GLU A 16 AA1 2 GLN A 2 ? THR A 7 ? GLN A 2 THR A 7 AA1 3 THR A 66 ? LEU A 71 ? THR A 66 LEU A 71 AA1 4 GLN A 41 ? PHE A 45 ? GLN A 41 PHE A 45 AA1 5 LYS A 48 ? GLN A 49 ? LYS A 48 GLN A 49 AA2 1 DTH B 12 ? DTH B 14 ? DTH B 12 DTH B 14 AA2 2 DPN B 4 ? DTH B 7 ? DPN B 4 DTH B 7 AA2 3 DLE B 67 ? DVA B 70 ? DLE B 67 DVA B 70 AA2 4 DAR B 42 ? DPN B 45 ? DAR B 42 DPN B 45 AA2 5 DLY B 48 ? DGN B 49 ? DLY B 48 DGN B 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 13 ? O ILE A 13 N VAL A 5 ? N VAL A 5 AA1 2 3 N LYS A 6 ? N LYS A 6 O LEU A 69 ? O LEU A 69 AA1 3 4 O HIS A 68 ? O HIS A 68 N ILE A 44 ? N ILE A 44 AA1 4 5 N PHE A 45 ? N PHE A 45 O LYS A 48 ? O LYS A 48 AA2 1 2 O DIL B 13 ? O DIL B 13 N DVA B 5 ? N DVA B 5 AA2 2 3 N DPN B 4 ? N DPN B 4 O DLE B 67 ? O DLE B 67 AA2 3 4 O DVA B 70 ? O DVA B 70 N DAR B 42 ? N DAR B 42 AA2 4 5 N DPN B 45 ? N DPN B 45 O DLY B 48 ? O DLY B 48 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'binding site for residue MG B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER A 65 ? SER A 65 . ? 1_555 ? 2 AC1 5 THR A 66 ? THR A 66 . ? 1_555 ? 3 AC1 5 HOH D . ? HOH A 234 . ? 1_555 ? 4 AC1 5 DTH B 66 ? DTH B 66 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH B 229 . ? 1_555 ? # _atom_sites.entry_id 5J8P _atom_sites.fract_transf_matrix[1][1] 0.022307 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007752 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015770 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020034 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 GLY 76 76 76 GLY GLY A . n B 2 1 DNE 1 1 1 DNE DNE B . n B 2 2 DGN 2 2 2 DGN DGN B . n B 2 3 DIL 3 3 3 DIL DIL B . n B 2 4 DPN 4 4 4 DPN DPN B . n B 2 5 DVA 5 5 5 DVA DVA B . n B 2 6 DLY 6 6 6 DLY DLY B . n B 2 7 DTH 7 7 7 DTH DTH B . n B 2 8 DLE 8 8 8 DLE DLE B . n B 2 9 DTH 9 9 9 DTH DTH B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 DLY 11 11 11 DLY DLY B . n B 2 12 DTH 12 12 12 DTH DTH B . n B 2 13 DIL 13 13 13 DIL DIL B . n B 2 14 DTH 14 14 14 DTH DTH B . n B 2 15 DLE 15 15 15 DLE DLE B . n B 2 16 DGL 16 16 16 DGL DGL B . n B 2 17 DVA 17 17 17 DVA DVA B . n B 2 18 DGL 18 18 18 DGL DGL B . n B 2 19 DPR 19 19 19 DPR DPR B . n B 2 20 DSN 20 20 20 DSN DSN B . n B 2 21 DAS 21 21 21 DAS DAS B . n B 2 22 DTH 22 22 22 DTH DTH B . n B 2 23 DIL 23 23 23 DIL DIL B . n B 2 24 DGL 24 24 24 DGL DGL B . n B 2 25 DSG 25 25 25 DSG DSG B . n B 2 26 DVA 26 26 26 DVA DVA B . n B 2 27 DLY 27 27 27 DLY DLY B . n B 2 28 DAL 28 28 28 DAL DAL B . n B 2 29 DLY 29 29 29 DLY DLY B . n B 2 30 DIL 30 30 30 DIL DIL B . n B 2 31 DGN 31 31 31 DGN DGN B . n B 2 32 DAS 32 32 32 DAS DAS B . n B 2 33 DLY 33 33 33 DLY DLY B . n B 2 34 DGL 34 34 34 DGL DGL B . n B 2 35 GLY 35 35 35 GLY GLY B . n B 2 36 DIL 36 36 36 DIL DIL B . n B 2 37 DPR 37 37 37 DPR DPR B . n B 2 38 DPR 38 38 38 DPR DPR B . n B 2 39 DAS 39 39 39 DAS DAS B . n B 2 40 DGN 40 40 40 DGN DGN B . n B 2 41 DGN 41 41 41 DGN DGN B . n B 2 42 DAR 42 42 42 DAR DAR B . n B 2 43 DLE 43 43 43 DLE DLE B . n B 2 44 DIL 44 44 44 DIL DIL B . n B 2 45 DPN 45 45 45 DPN DPN B . n B 2 46 DAL 46 46 46 DAL DAL B . n B 2 47 GLY 47 47 47 GLY GLY B . n B 2 48 DLY 48 48 48 DLY DLY B . n B 2 49 DGN 49 49 49 DGN DGN B . n B 2 50 DLE 50 50 50 DLE DLE B . n B 2 51 DGL 51 51 51 DGL DGL B . n B 2 52 DAS 52 52 52 DAS DAS B . n B 2 53 GLY 53 53 53 GLY GLY B . n B 2 54 DAR 54 54 54 DAR DAR B . n B 2 55 DTH 55 55 55 DTH DTH B . n B 2 56 DLE 56 56 56 DLE DLE B . n B 2 57 DSN 57 57 57 DSN DSN B . n B 2 58 DAS 58 58 58 DAS DAS B . n B 2 59 DTY 59 59 59 DTY DTY B . n B 2 60 DSG 60 60 60 DSG DSG B . n B 2 61 DIL 61 61 61 DIL DIL B . n B 2 62 DGN 62 62 62 DGN DGN B . n B 2 63 DLY 63 63 63 DLY DLY B . n B 2 64 DGL 64 64 64 DGL DGL B . n B 2 65 DSN 65 65 65 DSN DSN B . n B 2 66 DTH 66 66 66 DTH DTH B . n B 2 67 DLE 67 67 67 DLE DLE B . n B 2 68 DHI 68 68 68 DHI DHI B . n B 2 69 DLE 69 69 69 DLE DLE B . n B 2 70 DVA 70 70 70 DVA DVA B . n B 2 71 DLE 71 71 71 DLE DLE B . n B 2 72 DAR 72 72 72 DAR DAR B . n B 2 73 DLE 73 73 73 DLE DLE B . n B 2 74 DAR 74 74 74 DAR DAR B . n B 2 75 GLY 75 75 75 GLY GLY B . n B 2 76 DAL 76 76 76 DAL DAL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 101 1 MG MG B . D 4 HOH 1 201 44 HOH HOH A . D 4 HOH 2 202 46 HOH HOH A . D 4 HOH 3 203 101 HOH HOH A . D 4 HOH 4 204 84 HOH HOH A . D 4 HOH 5 205 14 HOH HOH A . D 4 HOH 6 206 47 HOH HOH A . D 4 HOH 7 207 71 HOH HOH A . D 4 HOH 8 208 98 HOH HOH A . D 4 HOH 9 209 50 HOH HOH A . D 4 HOH 10 210 86 HOH HOH A . D 4 HOH 11 211 34 HOH HOH A . D 4 HOH 12 212 1 HOH HOH A . D 4 HOH 13 213 53 HOH HOH A . D 4 HOH 14 214 5 HOH HOH A . D 4 HOH 15 215 28 HOH HOH A . D 4 HOH 16 216 51 HOH HOH A . D 4 HOH 17 217 2 HOH HOH A . D 4 HOH 18 218 68 HOH HOH A . D 4 HOH 19 219 38 HOH HOH A . D 4 HOH 20 220 8 HOH HOH A . D 4 HOH 21 221 63 HOH HOH A . D 4 HOH 22 222 39 HOH HOH A . D 4 HOH 23 223 100 HOH HOH A . D 4 HOH 24 224 105 HOH HOH A . D 4 HOH 25 225 27 HOH HOH A . D 4 HOH 26 226 17 HOH HOH A . D 4 HOH 27 227 6 HOH HOH A . D 4 HOH 28 228 41 HOH HOH A . D 4 HOH 29 229 11 HOH HOH A . D 4 HOH 30 230 22 HOH HOH A . D 4 HOH 31 231 95 HOH HOH A . D 4 HOH 32 232 32 HOH HOH A . D 4 HOH 33 233 93 HOH HOH A . D 4 HOH 34 234 10 HOH HOH A . D 4 HOH 35 235 15 HOH HOH A . D 4 HOH 36 236 97 HOH HOH A . D 4 HOH 37 237 99 HOH HOH A . D 4 HOH 38 238 80 HOH HOH A . D 4 HOH 39 239 26 HOH HOH A . D 4 HOH 40 240 61 HOH HOH A . D 4 HOH 41 241 40 HOH HOH A . D 4 HOH 42 242 77 HOH HOH A . D 4 HOH 43 243 82 HOH HOH A . D 4 HOH 44 244 52 HOH HOH A . D 4 HOH 45 245 33 HOH HOH A . D 4 HOH 46 246 104 HOH HOH A . D 4 HOH 47 247 79 HOH HOH A . D 4 HOH 48 248 65 HOH HOH A . D 4 HOH 49 249 92 HOH HOH A . D 4 HOH 50 250 96 HOH HOH A . D 4 HOH 51 251 87 HOH HOH A . D 4 HOH 52 252 30 HOH HOH A . D 4 HOH 53 253 75 HOH HOH A . D 4 HOH 54 254 102 HOH HOH A . D 4 HOH 55 255 85 HOH HOH A . D 4 HOH 56 256 91 HOH HOH A . E 4 HOH 1 201 57 HOH HOH B . E 4 HOH 2 202 67 HOH HOH B . E 4 HOH 3 203 64 HOH HOH B . E 4 HOH 4 204 62 HOH HOH B . E 4 HOH 5 205 83 HOH HOH B . E 4 HOH 6 206 25 HOH HOH B . E 4 HOH 7 207 59 HOH HOH B . E 4 HOH 8 208 24 HOH HOH B . E 4 HOH 9 209 12 HOH HOH B . E 4 HOH 10 210 9 HOH HOH B . E 4 HOH 11 211 3 HOH HOH B . E 4 HOH 12 212 23 HOH HOH B . E 4 HOH 13 213 43 HOH HOH B . E 4 HOH 14 214 103 HOH HOH B . E 4 HOH 15 215 49 HOH HOH B . E 4 HOH 16 216 13 HOH HOH B . E 4 HOH 17 217 36 HOH HOH B . E 4 HOH 18 218 72 HOH HOH B . E 4 HOH 19 219 55 HOH HOH B . E 4 HOH 20 220 7 HOH HOH B . E 4 HOH 21 221 20 HOH HOH B . E 4 HOH 22 222 54 HOH HOH B . E 4 HOH 23 223 4 HOH HOH B . E 4 HOH 24 224 76 HOH HOH B . E 4 HOH 25 225 73 HOH HOH B . E 4 HOH 26 226 29 HOH HOH B . E 4 HOH 27 227 35 HOH HOH B . E 4 HOH 28 228 70 HOH HOH B . E 4 HOH 29 229 21 HOH HOH B . E 4 HOH 30 230 37 HOH HOH B . E 4 HOH 31 231 31 HOH HOH B . E 4 HOH 32 232 16 HOH HOH B . E 4 HOH 33 233 45 HOH HOH B . E 4 HOH 34 234 19 HOH HOH B . E 4 HOH 35 235 66 HOH HOH B . E 4 HOH 36 236 42 HOH HOH B . E 4 HOH 37 237 81 HOH HOH B . E 4 HOH 38 238 90 HOH HOH B . E 4 HOH 39 239 18 HOH HOH B . E 4 HOH 40 240 60 HOH HOH B . E 4 HOH 41 241 88 HOH HOH B . E 4 HOH 42 242 78 HOH HOH B . E 4 HOH 43 243 94 HOH HOH B . E 4 HOH 44 244 89 HOH HOH B . E 4 HOH 45 245 106 HOH HOH B . E 4 HOH 46 246 58 HOH HOH B . E 4 HOH 47 247 56 HOH HOH B . E 4 HOH 48 248 74 HOH HOH B . E 4 HOH 49 249 48 HOH HOH B . E 4 HOH 50 250 69 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1500 ? 1 MORE -16 ? 1 'SSA (A^2)' 8360 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 234 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? B DTH 66 ? B DTH 66 ? 1_555 96.0 ? 2 O ? D HOH . ? A HOH 234 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? E HOH . ? B HOH 229 ? 1_555 110.1 ? 3 O ? B DTH 66 ? B DTH 66 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? E HOH . ? B HOH 229 ? 1_555 136.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-05-18 2 'Structure model' 1 1 2016-06-08 3 'Structure model' 1 2 2017-10-18 4 'Structure model' 1 3 2022-02-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_audit_support 2 3 'Structure model' pdbx_struct_oper_list 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.conn_type_id' 19 4 'Structure model' '_struct_conn.id' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 6.8711 _pdbx_refine_tls.origin_y 0.1809 _pdbx_refine_tls.origin_z 12.4319 _pdbx_refine_tls.T[1][1] 0.0811 _pdbx_refine_tls.T[2][2] 0.0917 _pdbx_refine_tls.T[3][3] 0.0610 _pdbx_refine_tls.T[1][2] -0.0134 _pdbx_refine_tls.T[1][3] -0.0095 _pdbx_refine_tls.T[2][3] -0.0162 _pdbx_refine_tls.L[1][1] 0.5740 _pdbx_refine_tls.L[2][2] 1.1193 _pdbx_refine_tls.L[3][3] 0.1863 _pdbx_refine_tls.L[1][2] -0.6286 _pdbx_refine_tls.L[1][3] -0.1692 _pdbx_refine_tls.L[2][3] -0.1689 _pdbx_refine_tls.S[1][1] -0.0219 _pdbx_refine_tls.S[1][2] -0.0470 _pdbx_refine_tls.S[1][3] 0.0055 _pdbx_refine_tls.S[2][1] -0.0353 _pdbx_refine_tls.S[2][2] 0.0345 _pdbx_refine_tls.S[2][3] -0.0414 _pdbx_refine_tls.S[3][1] 0.0042 _pdbx_refine_tls.S[3][2] 0.0100 _pdbx_refine_tls.S[3][3] 0.0318 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version '(1.10.1_2155: ???)' _software.pdbx_ordinal 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H B GLY 35 ? ? O B HOH 201 ? ? 1.39 2 1 HG1 A THR 14 ? ? O A HOH 202 ? ? 1.55 3 1 O B DGN 31 ? ? O B HOH 201 ? ? 1.81 4 1 O B HOH 239 ? ? O B HOH 249 ? ? 1.85 5 1 OE2 A GLU 51 ? ? O A HOH 201 ? ? 2.03 6 1 O B HOH 243 ? ? O B HOH 244 ? ? 2.03 7 1 O B HOH 215 ? ? O B HOH 247 ? ? 2.16 8 1 OG1 A THR 14 ? ? O A HOH 202 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 249 ? ? 1_555 O B HOH 217 ? ? 3_545 1.99 2 1 O A HOH 203 ? ? 1_555 O B HOH 244 ? ? 3_445 2.07 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 64 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 78.94 _pdbx_validate_torsion.psi -5.53 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'the National Basic Research Program of China' China 2013CB932800 1 'National Natural Science Foundation of China' China '21532004 and 21225207' 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH #