HEADER TRANSFERASE 08-APR-16 5J99 TITLE AMBIENT TEMPERATURE TRANSITION STATE STRUCTURE OF ARGININE KINASE - TITLE 2 CRYSTAL 8/FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AK; COMPND 5 EC: 2.7.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIMULUS POLYPHEMUS; SOURCE 3 ORGANISM_COMMON: ATLANTIC HORSESHOE CRAB; SOURCE 4 ORGANISM_TAXID: 6850; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMBIENT, TEMPERATURE, ARGININE, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GODSEY,O.DAVULCU,J.NIX,J.J.SKALICKY,R.BRUSCHWEILER,M.S.CHAPMAN REVDAT 6 27-SEP-23 5J99 1 REMARK REVDAT 5 25-DEC-19 5J99 1 REMARK REVDAT 4 13-SEP-17 5J99 1 JRNL REMARK REVDAT 3 19-OCT-16 5J99 1 JRNL REVDAT 2 21-SEP-16 5J99 1 JRNL REVDAT 1 17-AUG-16 5J99 0 JRNL AUTH M.H.GODSEY,O.DAVULCU,J.C.NIX,J.J.SKALICKY,R.P.BRUSCHWEILER, JRNL AUTH 2 M.S.CHAPMAN JRNL TITL THE SAMPLING OF CONFORMATIONAL DYNAMICS IN JRNL TITL 2 AMBIENT-TEMPERATURE CRYSTAL STRUCTURES OF ARGININE KINASE. JRNL REF STRUCTURE V. 24 1658 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27594681 JRNL DOI 10.1016/J.STR.2016.07.013 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 36646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9158 - 3.3992 0.97 5055 154 0.1215 0.1460 REMARK 3 2 3.3992 - 2.6983 0.99 4961 167 0.1461 0.1822 REMARK 3 3 2.6983 - 2.3573 0.98 4858 145 0.1537 0.1996 REMARK 3 4 2.3573 - 2.1418 0.95 4725 146 0.1491 0.1716 REMARK 3 5 2.1418 - 1.9883 0.92 4579 128 0.1615 0.2073 REMARK 3 6 1.9883 - 1.8711 0.84 4165 138 0.1986 0.2362 REMARK 3 7 1.8711 - 1.7774 0.76 3701 127 0.2486 0.2848 REMARK 3 8 1.7774 - 1.7000 0.71 3481 116 0.2837 0.3535 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3057 REMARK 3 ANGLE : 1.479 4132 REMARK 3 CHIRALITY : 0.068 461 REMARK 3 PLANARITY : 0.007 526 REMARK 3 DIHEDRAL : 15.734 1194 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 2:102 OR RESSEQ 193:201 OR REMARK 3 RESSEQ 269:276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.578 8.283 13.200 REMARK 3 T TENSOR REMARK 3 T11: 0.3112 T22: 0.2932 REMARK 3 T33: 0.3468 T12: 0.0632 REMARK 3 T13: -0.0947 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.6403 L22: 1.7601 REMARK 3 L33: 2.3169 L12: 0.2379 REMARK 3 L13: 0.5530 L23: 0.2623 REMARK 3 S TENSOR REMARK 3 S11: -0.1516 S12: 0.1189 S13: 0.4534 REMARK 3 S21: -0.3793 S22: -0.0288 S23: 0.4217 REMARK 3 S31: -0.5490 S32: -0.2976 S33: -0.1248 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 129:155 OR RESSEQ 167:173 OR REMARK 3 RESSEQ 202:213 OR RESSEQ 221:229 OR RESSEQ 258:259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.274 -4.635 32.629 REMARK 3 T TENSOR REMARK 3 T11: 0.1907 T22: 0.2476 REMARK 3 T33: 0.1771 T12: -0.0155 REMARK 3 T13: 0.0364 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.0308 L22: 1.6820 REMARK 3 L33: 1.7320 L12: 0.2854 REMARK 3 L13: -0.1673 L23: 0.5372 REMARK 3 S TENSOR REMARK 3 S11: 0.0557 S12: -0.2184 S13: -0.0785 REMARK 3 S21: 0.3298 S22: -0.0750 S23: 0.2297 REMARK 3 S31: 0.1556 S32: -0.1948 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 174:187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.866 -4.856 32.283 REMARK 3 T TENSOR REMARK 3 T11: 0.2905 T22: 0.3735 REMARK 3 T33: 0.2617 T12: 0.0311 REMARK 3 T13: -0.1169 T23: -0.0802 REMARK 3 L TENSOR REMARK 3 L11: 0.6855 L22: 1.4298 REMARK 3 L33: 1.0089 L12: 0.9771 REMARK 3 L13: 0.1822 L23: 0.4438 REMARK 3 S TENSOR REMARK 3 S11: -0.0470 S12: -0.4686 S13: -0.0082 REMARK 3 S21: 0.2507 S22: 0.2173 S23: -0.6109 REMARK 3 S31: -0.2523 S32: 0.9620 S33: -0.0895 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 103:128 OR RESSEQ 156:166 OR REMARK 3 RESSEQ 216:220 OR RESSEQ 233:257 OR RESSEQ 260:268 REMARK 3 OR RESSEQ 277:290 OR RESSEQ 330:357 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.532 -16.950 15.607 REMARK 3 T TENSOR REMARK 3 T11: 0.1795 T22: 0.1152 REMARK 3 T33: 0.1726 T12: 0.0015 REMARK 3 T13: -0.0394 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 1.6751 L22: 2.0495 REMARK 3 L33: 1.9712 L12: -0.2479 REMARK 3 L13: -0.0923 L23: 0.5375 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: 0.1161 S13: -0.2458 REMARK 3 S21: -0.0825 S22: -0.0153 S23: 0.0565 REMARK 3 S31: 0.2471 S32: -0.0727 S33: -0.0265 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 293:310 OR RESSEQ 321:329 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.232 -5.439 6.358 REMARK 3 T TENSOR REMARK 3 T11: 0.2981 T22: 0.2704 REMARK 3 T33: 0.2468 T12: 0.0158 REMARK 3 T13: 0.0158 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.6754 L22: 1.4976 REMARK 3 L33: 0.3700 L12: -1.0039 REMARK 3 L13: -0.0279 L23: 0.0432 REMARK 3 S TENSOR REMARK 3 S11: 0.0857 S12: 0.4291 S13: 0.4850 REMARK 3 S21: -0.4612 S22: -0.0317 S23: -0.3462 REMARK 3 S31: -0.3911 S32: 0.1450 S33: 0.0508 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND RESSEQ 402 REMARK 3 ORIGIN FOR THE GROUP (A): -10.115 2.896 15.803 REMARK 3 T TENSOR REMARK 3 T11: 0.6123 T22: 0.3801 REMARK 3 T33: 0.3350 T12: 0.0472 REMARK 3 T13: 0.1385 T23: 0.0576 REMARK 3 L TENSOR REMARK 3 L11: 5.8719 L22: 9.5591 REMARK 3 L33: 8.3961 L12: 6.8625 REMARK 3 L13: -4.9628 L23: -3.2618 REMARK 3 S TENSOR REMARK 3 S11: -0.0981 S12: -0.0134 S13: -0.0443 REMARK 3 S21: -0.0770 S22: -0.1362 S23: -0.1439 REMARK 3 S31: 0.2559 S32: 0.0446 S33: 0.0943 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND RESSEQ 403 REMARK 3 ORIGIN FOR THE GROUP (A): -9.218 -3.079 18.103 REMARK 3 T TENSOR REMARK 3 T11: 0.7129 T22: 0.7686 REMARK 3 T33: 1.3181 T12: 0.1441 REMARK 3 T13: 0.5017 T23: 0.1003 REMARK 3 L TENSOR REMARK 3 L11: 2.1260 L22: 2.8005 REMARK 3 L33: 2.1944 L12: 2.1894 REMARK 3 L13: 2.0099 L23: 1.6703 REMARK 3 S TENSOR REMARK 3 S11: -0.5475 S12: -0.2385 S13: 0.8795 REMARK 3 S21: 1.3116 S22: 0.1981 S23: 0.8130 REMARK 3 S31: 1.4949 S32: 0.5327 S33: 0.3145 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 400 AND ( NAME N1 OR NAME C2 OR REMARK 3 NAME N3 OR NAME C4 OR NAME C5 OR NAME C6 OR NAME N6 REMARK 3 OR NAME N7 OR NAME C8 OR NAME N9 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.294 -10.428 19.224 REMARK 3 T TENSOR REMARK 3 T11: 0.1897 T22: 0.2590 REMARK 3 T33: 0.1922 T12: 0.0464 REMARK 3 T13: -0.0461 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 3.7142 L22: 3.7189 REMARK 3 L33: 4.6494 L12: 0.9102 REMARK 3 L13: 3.0848 L23: 3.0277 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: -0.0587 S13: 0.1375 REMARK 3 S21: 0.1588 S22: 0.2876 S23: -0.3364 REMARK 3 S31: 0.0947 S32: -0.0131 S33: -0.0588 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 400 AND ( NAME C1' OR NAME C2' REMARK 3 OR NAME O2' OR NAME C3' OR NAME O3' OR NAME C4' OR REMARK 3 NAME O4' OR NAME C5' OR NAME O5' ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.640 -6.169 21.598 REMARK 3 T TENSOR REMARK 3 T11: 0.2043 T22: 0.2241 REMARK 3 T33: 0.2784 T12: 0.0208 REMARK 3 T13: -0.0459 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 8.8677 L22: 4.7301 REMARK 3 L33: 5.1334 L12: -1.0085 REMARK 3 L13: 4.3573 L23: -4.2094 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: -0.0483 S13: 0.1715 REMARK 3 S21: 0.0474 S22: 0.1077 S23: 0.2196 REMARK 3 S31: 0.0857 S32: 0.0438 S33: 0.0207 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 400 AND ( NAME PA OR NAME O1A REMARK 3 OR NAME O2A OR NAME O3A OR NAME PB OR NAME O1B OR REMARK 3 NAME O2B OR NAME O3B ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.149 -4.972 19.670 REMARK 3 T TENSOR REMARK 3 T11: 0.1389 T22: 0.2065 REMARK 3 T33: 0.2680 T12: 0.0115 REMARK 3 T13: 0.0070 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 4.3909 L22: 8.9345 REMARK 3 L33: 3.3764 L12: 3.4327 REMARK 3 L13: 0.1738 L23: -4.4470 REMARK 3 S TENSOR REMARK 3 S11: 0.1184 S12: -0.8353 S13: -0.3274 REMARK 3 S21: -0.1917 S22: -0.4964 S23: -0.0548 REMARK 3 S31: 0.0788 S32: 0.0769 S33: 0.4075 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36646 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 35.908 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1M15 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MM HEPES, PH 7.5 18% PEG 6000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.93550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.41900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.01750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.41900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.93550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.01750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 692 O HOH A 703 2.06 REMARK 500 OE1 GLU A 150 O HOH A 501 2.16 REMARK 500 SG CYS A 139 O HOH A 692 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 65 -70.55 -115.15 REMARK 500 ASP A 114 71.14 -161.45 REMARK 500 ASP A 161 -125.60 64.74 REMARK 500 GLU A 224 -113.04 -87.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 401 O3B REMARK 620 2 ADP A 401 O2A 87.3 REMARK 620 3 NO3 A 403 O1 81.4 91.5 REMARK 620 4 HOH A 543 O 103.1 86.6 175.0 REMARK 620 5 HOH A 566 O 165.1 85.6 85.7 89.6 REMARK 620 6 HOH A 581 O 91.9 173.3 94.9 87.2 96.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J9A RELATED DB: PDB DBREF 5J99 A 1 357 UNP P51541 KARG_LIMPO 1 357 SEQADV 5J99 GLN A 103 UNP P51541 GLU 103 ENGINEERED MUTATION SEQADV 5J99 GLY A 112 UNP P51541 ASP 112 ENGINEERED MUTATION SEQADV 5J99 ALA A 116 UNP P51541 GLY 116 ENGINEERED MUTATION SEQRES 1 A 357 MET VAL ASP GLN ALA THR LEU ASP LYS LEU GLU ALA GLY SEQRES 2 A 357 PHE LYS LYS LEU GLN GLU ALA SER ASP CYS LYS SER LEU SEQRES 3 A 357 LEU LYS LYS HIS LEU THR LYS ASP VAL PHE ASP SER ILE SEQRES 4 A 357 LYS ASN LYS LYS THR GLY MET GLY ALA THR LEU LEU ASP SEQRES 5 A 357 VAL ILE GLN SER GLY VAL GLU ASN LEU ASP SER GLY VAL SEQRES 6 A 357 GLY ILE TYR ALA PRO ASP ALA GLU SER TYR ARG THR PHE SEQRES 7 A 357 GLY PRO LEU PHE ASP PRO ILE ILE ASP ASP TYR HIS GLY SEQRES 8 A 357 GLY PHE LYS LEU THR ASP LYS HIS PRO PRO LYS GLN TRP SEQRES 9 A 357 GLY ASP ILE ASN THR LEU VAL GLY LEU ASP PRO ALA GLY SEQRES 10 A 357 GLN PHE ILE ILE SER THR ARG VAL ARG CYS GLY ARG SER SEQRES 11 A 357 LEU GLN GLY TYR PRO PHE ASN PRO CYS LEU THR ALA GLU SEQRES 12 A 357 GLN TYR LYS GLU MET GLU GLU LYS VAL SER SER THR LEU SEQRES 13 A 357 SER SER MET GLU ASP GLU LEU LYS GLY THR TYR TYR PRO SEQRES 14 A 357 LEU THR GLY MET SER LYS ALA THR GLN GLN GLN LEU ILE SEQRES 15 A 357 ASP ASP HIS PHE LEU PHE LYS GLU GLY ASP ARG PHE LEU SEQRES 16 A 357 GLN THR ALA ASN ALA CYS ARG TYR TRP PRO THR GLY ARG SEQRES 17 A 357 GLY ILE PHE HIS ASN ASP ALA LYS THR PHE LEU VAL TRP SEQRES 18 A 357 VAL ASN GLU GLU ASP HIS LEU ARG ILE ILE SER MET GLN SEQRES 19 A 357 LYS GLY GLY ASP LEU LYS THR VAL TYR LYS ARG LEU VAL SEQRES 20 A 357 THR ALA VAL ASP ASN ILE GLU SER LYS LEU PRO PHE SER SEQRES 21 A 357 HIS ASP ASP ARG PHE GLY PHE LEU THR PHE CYS PRO THR SEQRES 22 A 357 ASN LEU GLY THR THR MET ARG ALA SER VAL HIS ILE GLN SEQRES 23 A 357 LEU PRO LYS LEU ALA LYS ASP ARG LYS VAL LEU GLU ASP SEQRES 24 A 357 ILE ALA SER LYS PHE ASN LEU GLN VAL ARG GLY THR ARG SEQRES 25 A 357 GLY GLU HIS THR GLU SER GLU GLY GLY VAL TYR ASP ILE SEQRES 26 A 357 SER ASN LYS ARG ARG LEU GLY LEU THR GLU TYR GLN ALA SEQRES 27 A 357 VAL ARG GLU MET GLN ASP GLY ILE LEU GLU MET ILE LYS SEQRES 28 A 357 MET GLU LYS ALA ALA ALA HET ADP A 401 27 HET ARG A 402 12 HET NO3 A 403 4 HET MG A 404 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ARG ARGININE HETNAM NO3 NITRATE ION HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 ARG C6 H15 N4 O2 1+ FORMUL 4 NO3 N O3 1- FORMUL 5 MG MG 2+ FORMUL 6 HOH *214(H2 O) HELIX 1 AA1 ASP A 3 ALA A 20 1 18 HELIX 2 AA2 SER A 25 LEU A 31 1 7 HELIX 3 AA3 THR A 32 LYS A 40 1 9 HELIX 4 AA4 THR A 49 ASN A 60 1 12 HELIX 5 AA5 GLU A 73 PHE A 78 1 6 HELIX 6 AA6 PHE A 78 HIS A 90 1 13 HELIX 7 AA7 ASP A 106 LEU A 110 5 5 HELIX 8 AA8 PHE A 136 LEU A 140 5 5 HELIX 9 AA9 THR A 141 SER A 157 1 17 HELIX 10 AB1 SER A 158 MET A 159 5 2 HELIX 11 AB2 GLU A 160 LYS A 164 5 5 HELIX 12 AB3 SER A 174 ASP A 184 1 11 HELIX 13 AB4 ASP A 192 ALA A 198 1 7 HELIX 14 AB5 ASP A 238 SER A 255 1 18 HELIX 15 AB6 CYS A 271 LEU A 275 5 5 HELIX 16 AB7 LYS A 289 LYS A 292 5 4 HELIX 17 AB8 ASP A 293 PHE A 304 1 12 HELIX 18 AB9 THR A 334 ALA A 356 1 23 SHEET 1 AA1 8 THR A 166 PRO A 169 0 SHEET 2 AA1 8 GLY A 209 HIS A 212 -1 O ILE A 210 N TYR A 168 SHEET 3 AA1 8 PHE A 218 VAL A 222 -1 O VAL A 220 N PHE A 211 SHEET 4 AA1 8 LEU A 228 LYS A 235 -1 O ILE A 231 N LEU A 219 SHEET 5 AA1 8 ILE A 120 ARG A 129 -1 N VAL A 125 O SER A 232 SHEET 6 AA1 8 ARG A 280 GLN A 286 -1 O HIS A 284 N ILE A 121 SHEET 7 AA1 8 VAL A 322 ASN A 327 -1 O TYR A 323 N ILE A 285 SHEET 8 AA1 8 LEU A 306 ARG A 309 -1 N ARG A 309 O ASP A 324 SHEET 1 AA2 2 HIS A 261 ASP A 262 0 SHEET 2 AA2 2 GLY A 266 PHE A 267 -1 O GLY A 266 N ASP A 262 LINK O3B ADP A 401 MG MG A 404 1555 1555 2.02 LINK O2A ADP A 401 MG MG A 404 1555 1555 2.08 LINK O1 NO3 A 403 MG MG A 404 1555 1555 2.50 LINK MG MG A 404 O HOH A 543 1555 1555 2.08 LINK MG MG A 404 O HOH A 566 1555 1555 2.13 LINK MG MG A 404 O HOH A 581 1555 1555 2.10 CISPEP 1 TRP A 204 PRO A 205 0 6.48 SITE 1 AC1 26 SER A 122 ARG A 124 ARG A 126 HIS A 185 SITE 2 AC1 26 TRP A 221 ARG A 229 MET A 233 ARG A 280 SITE 3 AC1 26 SER A 282 VAL A 283 HIS A 284 ARG A 309 SITE 4 AC1 26 THR A 311 ARG A 312 GLY A 313 GLU A 314 SITE 5 AC1 26 ASP A 324 NO3 A 403 MG A 404 HOH A 525 SITE 6 AC1 26 HOH A 543 HOH A 566 HOH A 577 HOH A 581 SITE 7 AC1 26 HOH A 586 HOH A 603 SITE 1 AC2 12 SER A 63 GLY A 64 VAL A 65 GLY A 66 SITE 2 AC2 12 TYR A 68 GLU A 225 CYS A 271 GLU A 314 SITE 3 AC2 12 HIS A 315 NO3 A 403 HOH A 551 HOH A 593 SITE 1 AC3 10 ARG A 126 GLU A 225 ARG A 229 ASN A 274 SITE 2 AC3 10 ARG A 309 GLU A 314 ADP A 401 ARG A 402 SITE 3 AC3 10 MG A 404 HOH A 555 SITE 1 AC4 5 ADP A 401 NO3 A 403 HOH A 543 HOH A 566 SITE 2 AC4 5 HOH A 581 CRYST1 63.871 66.035 86.838 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015657 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015143 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011516 0.00000