HEADER TRANSFERASE 10-APR-16 5J9N TITLE TRNA GUANINE TRANSGLYCOSYLASE (TGT) IN CO-CRYSTALLIZED COMPLEX WITH 2- TITLE 2 (METHYLAMINO)-1H-BENZO[D]IMIDAZOLE-5-CARBOHYDRAZIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME,TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS (STRAIN ATCC SOURCE 3 31821 / ZM4 / CP4); SOURCE 4 ORGANISM_TAXID: 264203; SOURCE 5 STRAIN: ATCC 31821 / ZM4 / CP4; SOURCE 6 GENE: TGT, ZMO0363; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BENZIMIDAZOLE-DERIVATIVES, SHIGELLOSIS, TRANSFERASE, TRANSFERASE KEYWDS 2 INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR F.R.EHRMANN,A.HEINE,G.KLEBE REVDAT 2 10-JAN-24 5J9N 1 REMARK REVDAT 1 24-MAY-17 5J9N 0 JRNL AUTH F.R.EHRMANN,C.HOHN,A.HEINE,F.DIEDERICH,G.KLEBE JRNL TITL BENZIMIDAZOLE-BASED INHIBITORS AS A NOVEL SCAFFOLD TO JRNL TITL 2 INHIBIT Z.MOBILIS TGT AND STUDY PROTEIN FLEXIBILITY AND THE JRNL TITL 3 CONTRIBUTIONS OF ACTIVE SITE RESIDUES TO BINDING AFFINITY OF JRNL TITL 4 LIN-BENZOPURINES. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1-2155_1492) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 49285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6944 - 4.2871 0.95 2621 138 0.1986 0.2151 REMARK 3 2 4.2871 - 3.4033 0.97 2598 136 0.1922 0.2157 REMARK 3 3 3.4033 - 2.9733 0.96 2597 137 0.2169 0.2225 REMARK 3 4 2.9733 - 2.7015 0.95 2536 133 0.2257 0.2551 REMARK 3 5 2.7015 - 2.5079 0.97 2590 136 0.2213 0.2344 REMARK 3 6 2.5079 - 2.3600 0.98 2620 138 0.2180 0.2372 REMARK 3 7 2.3600 - 2.2418 0.98 2609 137 0.2248 0.2703 REMARK 3 8 2.2418 - 2.1442 0.99 2622 137 0.2276 0.2549 REMARK 3 9 2.1442 - 2.0617 0.98 2600 137 0.2133 0.2527 REMARK 3 10 2.0617 - 1.9906 0.98 2627 139 0.2135 0.2454 REMARK 3 11 1.9906 - 1.9283 0.99 2629 138 0.2154 0.2326 REMARK 3 12 1.9283 - 1.8732 0.99 2657 140 0.2264 0.2812 REMARK 3 13 1.8732 - 1.8239 1.00 2668 140 0.2184 0.2400 REMARK 3 14 1.8239 - 1.7794 1.00 2616 138 0.2160 0.2591 REMARK 3 15 1.7794 - 1.7389 1.00 2631 139 0.2187 0.2577 REMARK 3 16 1.7389 - 1.7019 0.99 2658 140 0.2298 0.2567 REMARK 3 17 1.7019 - 1.6679 0.99 2644 139 0.2520 0.2898 REMARK 3 18 1.6679 - 1.6364 0.87 2299 121 0.2800 0.3152 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2924 REMARK 3 ANGLE : 0.830 3945 REMARK 3 CHIRALITY : 0.050 414 REMARK 3 PLANARITY : 0.006 540 REMARK 3 DIHEDRAL : 16.409 1756 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 11:105) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9070 4.2230 17.9900 REMARK 3 T TENSOR REMARK 3 T11: 0.1494 T22: 0.1171 REMARK 3 T33: 0.1079 T12: 0.0138 REMARK 3 T13: 0.0131 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.5897 L22: 0.1380 REMARK 3 L33: 0.3104 L12: -0.1418 REMARK 3 L13: 0.3988 L23: -0.0300 REMARK 3 S TENSOR REMARK 3 S11: -0.0509 S12: -0.2157 S13: 0.0657 REMARK 3 S21: 0.1184 S22: 0.0523 S23: -0.0014 REMARK 3 S31: 0.0773 S32: -0.0863 S33: 0.0035 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 106:135) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7577 25.9732 26.8528 REMARK 3 T TENSOR REMARK 3 T11: 0.4714 T22: 0.3871 REMARK 3 T33: 0.4861 T12: 0.1241 REMARK 3 T13: -0.1181 T23: -0.1742 REMARK 3 L TENSOR REMARK 3 L11: 0.3154 L22: 0.1371 REMARK 3 L33: 0.0717 L12: 0.2074 REMARK 3 L13: -0.1034 L23: -0.0691 REMARK 3 S TENSOR REMARK 3 S11: -0.2545 S12: -0.0742 S13: 0.4033 REMARK 3 S21: 0.0239 S22: 0.0705 S23: 0.0895 REMARK 3 S31: -0.2591 S32: -0.3748 S33: 0.0314 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 136:159) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1047 13.4419 29.5076 REMARK 3 T TENSOR REMARK 3 T11: 0.3013 T22: 0.3515 REMARK 3 T33: 0.1916 T12: 0.0724 REMARK 3 T13: 0.0097 T23: -0.0773 REMARK 3 L TENSOR REMARK 3 L11: 0.2230 L22: 0.0206 REMARK 3 L33: 0.2395 L12: -0.0423 REMARK 3 L13: 0.2202 L23: -0.0212 REMARK 3 S TENSOR REMARK 3 S11: -0.1589 S12: -0.3949 S13: 0.2345 REMARK 3 S21: 0.2322 S22: 0.1672 S23: -0.1168 REMARK 3 S31: -0.0549 S32: -0.1384 S33: 0.0279 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 160:289) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1862 12.6022 24.9508 REMARK 3 T TENSOR REMARK 3 T11: 0.2179 T22: 0.2564 REMARK 3 T33: 0.2384 T12: 0.0159 REMARK 3 T13: -0.0576 T23: -0.0943 REMARK 3 L TENSOR REMARK 3 L11: 1.1674 L22: 1.1512 REMARK 3 L33: 0.6204 L12: -0.3539 REMARK 3 L13: -0.4358 L23: 0.2536 REMARK 3 S TENSOR REMARK 3 S11: -0.0722 S12: -0.3693 S13: 0.3066 REMARK 3 S21: 0.2185 S22: 0.1429 S23: -0.1754 REMARK 3 S31: 0.0189 S32: 0.0873 S33: 0.0092 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 290:382) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9147 6.8242 -2.5948 REMARK 3 T TENSOR REMARK 3 T11: 0.1361 T22: 0.1841 REMARK 3 T33: 0.1806 T12: 0.0034 REMARK 3 T13: 0.0249 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.5193 L22: 0.2586 REMARK 3 L33: 0.5987 L12: -0.1468 REMARK 3 L13: 0.5707 L23: -0.1212 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: 0.1998 S13: 0.0730 REMARK 3 S21: -0.1035 S22: -0.0224 S23: -0.1047 REMARK 3 S31: 0.0428 S32: 0.1947 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J9N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49307 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 45.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 9.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P0D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 8000,100MM MES, 1MM DTT, 10% REMARK 280 DMSO,, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.17950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.27350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.17950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.27350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 698 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 THR A 115 REMARK 465 LEU A 128 REMARK 465 ASP A 129 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 11 NE CZ NH1 NH2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 VAL A 108 CG1 CG2 REMARK 470 MET A 109 CE REMARK 470 SER A 110 OG REMARK 470 LEU A 111 CG CD1 CD2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 THR A 123 OG1 CG2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 HIS A 127 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 131 OG REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 MET A 134 CE REMARK 470 SER A 149 OG REMARK 470 THR A 159 OG1 CG2 REMARK 470 THR A 164 OG1 CG2 REMARK 470 SER A 166 OG REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 SER A 170 OG REMARK 470 SER A 171 OG REMARK 470 MET A 172 CE REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 VAL A 206 CG1 CG2 REMARK 470 LEU A 210 CD1 CD2 REMARK 470 GLN A 213 CG CD OE1 NE2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 VAL A 233 CG1 CG2 REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 ARG A 242 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 306 NE CZ NH1 NH2 REMARK 470 GLN A 324 CD OE1 NE2 REMARK 470 GLN A 375 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 48 39.67 -97.95 REMARK 500 GLN A 203 -168.51 -118.80 REMARK 500 SER A 205 -135.22 59.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 107.0 REMARK 620 3 CYS A 323 SG 115.7 116.3 REMARK 620 4 HIS A 349 ND1 104.7 113.8 98.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6H9 A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J9M RELATED DB: PDB REMARK 900 RELATED ID: 1P0D RELATED DB: PDB REMARK 900 RELATED ID: 4PUK RELATED DB: PDB REMARK 900 RELATED ID: 3S1G RELATED DB: PDB REMARK 900 RELATED ID: 5I07 RELATED DB: PDB REMARK 900 RELATED ID: 4KWO RELATED DB: PDB DBREF 5J9N A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 5J9N LYS A 312 UNP P28720 THR 312 CONFLICT SEQRES 1 A 386 MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG PRO ARG SEQRES 2 A 386 PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS ALA ARG SEQRES 3 A 386 THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE ARG THR SEQRES 4 A 386 PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR VAL LYS SEQRES 5 A 386 ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY ALA ASP SEQRES 6 A 386 ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU ARG PRO SEQRES 7 A 386 GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU HIS SER SEQRES 8 A 386 PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASP SER GLY SEQRES 9 A 386 GLY TYR GLN VAL MET SER LEU SER SER LEU THR LYS GLN SEQRES 10 A 386 SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU ASP GLY SEQRES 11 A 386 SER ARG HIS MET LEU SER PRO GLU ARG SER ILE GLU ILE SEQRES 12 A 386 GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA PHE ASP SEQRES 13 A 386 GLU CYS THR PRO TYR PRO ALA THR PRO SER ARG ALA ALA SEQRES 14 A 386 SER SER MET GLU ARG SER MET ARG TRP ALA LYS ARG SER SEQRES 15 A 386 ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA GLU ASN SEQRES 16 A 386 ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL PHE GLU SEQRES 17 A 386 ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA GLU ILE SEQRES 18 A 386 GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA VAL GLY SEQRES 19 A 386 GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP PHE SER SEQRES 20 A 386 VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR LEU MET SEQRES 21 A 386 GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA VAL GLU SEQRES 22 A 386 ARG GLY ILE ASP MET PHE ASP CYS VAL LEU PRO THR ARG SEQRES 23 A 386 SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP GLY PRO SEQRES 24 A 386 ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP LEU LYS SEQRES 25 A 386 PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS GLN LYS SEQRES 26 A 386 TRP SER ARG ALA TYR ILE HIS HIS LEU ILE ARG ALA GLY SEQRES 27 A 386 GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS ASN ILE SEQRES 28 A 386 ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG ASP SER SEQRES 29 A 386 ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN ASP PHE SEQRES 30 A 386 ARG ALA ARG TYR PHE ALA ARG ASN SER HET ZN A 401 1 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET 6H9 A 405 15 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM 6H9 2-(METHYLAMINO)-1H-BENZIMIDAZOLE-5-CARBOHYDRAZIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 6H9 C9 H11 N5 O FORMUL 7 HOH *207(H2 O) HELIX 1 AA1 LYS A 55 THR A 62 1 8 HELIX 2 AA2 THR A 71 ARG A 77 1 7 HELIX 3 AA3 GLY A 79 LEU A 86 1 8 HELIX 4 AA4 GLY A 88 GLY A 94 1 7 HELIX 5 AA5 GLY A 104 SER A 112 1 9 HELIX 6 AA6 SER A 136 GLY A 148 1 13 HELIX 7 AA7 THR A 164 SER A 188 1 25 HELIX 8 AA8 ARG A 189 ALA A 196 1 8 HELIX 9 AA9 PHE A 207 GLY A 222 1 16 HELIX 10 AB1 GLY A 236 VAL A 248 1 13 HELIX 11 AB2 PRO A 249 LEU A 251 5 3 HELIX 12 AB3 LYS A 264 GLU A 273 1 10 HELIX 13 AB4 VAL A 282 ASN A 290 1 9 HELIX 14 AB5 ASN A 304 SER A 308 5 5 HELIX 15 AB6 CYS A 320 TRP A 326 1 7 HELIX 16 AB7 SER A 327 ALA A 337 1 11 HELIX 17 AB8 GLU A 339 GLU A 367 1 29 HELIX 18 AB9 ARG A 369 PHE A 382 1 14 SHEET 1 AA1 3 PHE A 14 GLU A 22 0 SHEET 2 AA1 3 ALA A 25 MET A 32 -1 O THR A 29 N SER A 17 SHEET 3 AA1 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 AA2 8 ALA A 41 MET A 43 0 SHEET 2 AA2 8 MET A 278 ASP A 280 1 O PHE A 279 N MET A 43 SHEET 3 AA2 8 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 AA2 8 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 AA2 8 ALA A 197 GLN A 202 1 N GLY A 200 O ALA A 227 SHEET 6 AA2 8 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 AA2 8 ILE A 99 ASP A 102 1 N THR A 101 O ILE A 151 SHEET 8 AA2 8 ILE A 67 ASN A 70 1 N GLY A 69 O LEU A 100 SHEET 1 AA3 2 VAL A 122 LYS A 125 0 SHEET 2 AA3 2 ARG A 132 LEU A 135 -1 O HIS A 133 N PHE A 124 SHEET 1 AA4 2 GLN A 292 ALA A 293 0 SHEET 2 AA4 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 320 ZN ZN A 401 1555 1555 2.35 LINK SG CYS A 323 ZN ZN A 401 1555 1555 2.25 LINK ND1 HIS A 349 ZN ZN A 401 1555 1555 2.12 CISPEP 1 THR A 39 PRO A 40 0 -0.44 CISPEP 2 ARG A 77 PRO A 78 0 5.47 CISPEP 3 TYR A 161 PRO A 162 0 -3.83 CISPEP 4 VAL A 262 GLY A 263 0 -0.43 SITE 1 AC1 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC2 9 PRO A 56 GLU A 57 GLY A 94 TRP A 95 SITE 2 AC2 9 ASP A 96 ARG A 97 LYS A 325 HOH A 518 SITE 3 AC2 9 HOH A 639 SITE 1 AC3 5 LEU A 311 CYS A 323 TRP A 326 SER A 327 SITE 2 AC3 5 HOH A 618 SITE 1 AC4 7 GLU A 317 LYS A 360 PHE A 373 ARG A 380 SITE 2 AC4 7 HOH A 543 HOH A 558 HOH A 578 SITE 1 AC5 11 TYR A 106 ASP A 156 CYS A 158 ILE A 201 SITE 2 AC5 11 GLN A 203 GLY A 229 GLY A 230 LEU A 231 SITE 3 AC5 11 ALA A 232 MET A 260 GLY A 261 CRYST1 90.359 64.547 71.273 90.00 92.85 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011067 0.000000 0.000550 0.00000 SCALE2 0.000000 0.015493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014048 0.00000