HEADER TRANSFERASE 11-APR-16 5JA0 TITLE CRYSTAL STRUCTURE OF HUMAN FPPS WITH ALLOSTERICALLY BOUND FPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: UNP RESIDUES 67-419; COMPND 5 SYNONYM: FPS,(2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE,FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10,2.5.1.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.PARK,M.ZIELINSKI,Y.S.TSANTRIZOS,A.M.BERGHUIS REVDAT 3 27-SEP-23 5JA0 1 REMARK REVDAT 2 01-FEB-17 5JA0 1 JRNL REVDAT 1 25-JAN-17 5JA0 0 JRNL AUTH J.PARK,M.ZIELINSKI,A.MAGDER,Y.S.TSANTRIZOS,A.M.BERGHUIS JRNL TITL HUMAN FARNESYL PYROPHOSPHATE SYNTHASE IS ALLOSTERICALLY JRNL TITL 2 INHIBITED BY ITS OWN PRODUCT. JRNL REF NAT COMMUN V. 8 14132 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28098152 JRNL DOI 10.1038/NCOMMS14132 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2025 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2625 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2595 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.62000 REMARK 3 B22 (A**2) : -2.62000 REMARK 3 B33 (A**2) : 5.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.131 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2678 ; 0.029 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2523 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3636 ; 2.403 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5767 ; 1.246 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 5.580 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;32.875 ;24.298 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;14.515 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;15.389 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.159 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3030 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 623 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1318 ; 2.152 ; 2.900 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1319 ; 2.151 ; 2.901 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1643 ; 2.942 ; 4.328 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1643 ; 2.943 ; 4.327 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1360 ; 3.203 ; 3.210 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1361 ; 3.202 ; 3.211 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1994 ; 4.723 ; 4.712 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3328 ; 7.591 ;25.056 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3329 ; 7.591 ;25.063 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 10 F 30 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9196 80.4367 10.5324 REMARK 3 T TENSOR REMARK 3 T11: 0.1698 T22: 0.2955 REMARK 3 T33: 0.1973 T12: -0.1049 REMARK 3 T13: -0.1272 T23: -0.0480 REMARK 3 L TENSOR REMARK 3 L11: 11.8528 L22: 8.1920 REMARK 3 L33: 8.4772 L12: 5.6282 REMARK 3 L13: -7.9061 L23: -3.9241 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: 0.5851 S13: 0.0060 REMARK 3 S21: -0.1727 S22: 0.1690 S23: 0.5669 REMARK 3 S31: 0.2644 S32: -0.7778 S33: -0.1897 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 36 F 76 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5780 82.9613 14.2055 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.1502 REMARK 3 T33: 0.1180 T12: -0.0416 REMARK 3 T13: -0.0739 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 6.5202 L22: 2.4912 REMARK 3 L33: 5.5846 L12: 0.4142 REMARK 3 L13: -4.8601 L23: 0.3561 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: 0.6230 S13: -0.0226 REMARK 3 S21: -0.3638 S22: 0.0527 S23: 0.4368 REMARK 3 S31: 0.0392 S32: -0.6856 S33: -0.0813 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 77 F 147 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2141 82.7812 15.9429 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.0488 REMARK 3 T33: 0.0250 T12: -0.0418 REMARK 3 T13: -0.0003 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 6.4355 L22: 3.8872 REMARK 3 L33: 1.7819 L12: -2.5005 REMARK 3 L13: -0.6607 L23: -0.3635 REMARK 3 S TENSOR REMARK 3 S11: -0.0874 S12: 0.2352 S13: -0.3218 REMARK 3 S21: -0.2082 S22: 0.0267 S23: 0.2643 REMARK 3 S31: 0.2182 S32: -0.2707 S33: 0.0607 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 148 F 178 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0440 92.6303 25.7218 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.0397 REMARK 3 T33: 0.0419 T12: -0.0262 REMARK 3 T13: 0.0273 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 10.5019 L22: 6.4555 REMARK 3 L33: 6.4704 L12: -5.4813 REMARK 3 L13: 5.2285 L23: -4.6847 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: -0.3083 S13: 0.0887 REMARK 3 S21: 0.0823 S22: 0.0751 S23: 0.2001 REMARK 3 S31: -0.1939 S32: -0.0983 S33: -0.0836 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 179 F 293 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6836 78.3083 38.4699 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: 0.2798 REMARK 3 T33: 0.1620 T12: 0.0018 REMARK 3 T13: 0.0413 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 4.3519 L22: 3.9240 REMARK 3 L33: 3.9679 L12: -0.8039 REMARK 3 L13: 0.9885 L23: -1.9964 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.4050 S13: -0.4991 REMARK 3 S21: 0.4475 S22: -0.2084 S23: -0.2004 REMARK 3 S31: 0.2762 S32: 0.5393 S33: 0.2136 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 294 F 350 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6601 73.9138 41.2640 REMARK 3 T TENSOR REMARK 3 T11: 0.3091 T22: 0.2560 REMARK 3 T33: 0.3187 T12: 0.0167 REMARK 3 T13: 0.1446 T23: 0.0564 REMARK 3 L TENSOR REMARK 3 L11: 4.4000 L22: 4.5679 REMARK 3 L33: 3.0676 L12: -1.9255 REMARK 3 L13: 2.1536 L23: -2.7664 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: -0.3093 S13: -0.5939 REMARK 3 S21: 0.3328 S22: -0.0957 S23: 0.1478 REMARK 3 S31: 0.3952 S32: 0.1305 S33: 0.0483 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38509 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 1.11100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0123 REMARK 200 STARTING MODEL: 2F7M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M TRISHCL, 1.6 M AMMONIUM REMARK 280 PHOSPHATE, 20% GLYCEROL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.74000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.44500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.44500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.37000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.44500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.44500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.11000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.44500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.44500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.37000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.44500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.44500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.11000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 110.89000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 110.89000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.74000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F -21 REMARK 465 GLY F -20 REMARK 465 SER F -19 REMARK 465 SER F -18 REMARK 465 HIS F -17 REMARK 465 HIS F -16 REMARK 465 HIS F -15 REMARK 465 HIS F -14 REMARK 465 HIS F -13 REMARK 465 HIS F -12 REMARK 465 SER F -11 REMARK 465 SER F -10 REMARK 465 GLY F -9 REMARK 465 ARG F -8 REMARK 465 GLU F -7 REMARK 465 ASN F -6 REMARK 465 LEU F -5 REMARK 465 TYR F -4 REMARK 465 PHE F -3 REMARK 465 GLN F -2 REMARK 465 GLY F -1 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 ASN F 2 REMARK 465 GLY F 3 REMARK 465 ASP F 4 REMARK 465 GLN F 5 REMARK 465 ASN F 6 REMARK 465 SER F 7 REMARK 465 ASP F 8 REMARK 465 VAL F 9 REMARK 465 ASP F 31 REMARK 465 GLU F 32 REMARK 465 MET F 33 REMARK 465 GLY F 34 REMARK 465 HIS F 35 REMARK 465 SER F 253 REMARK 465 VAL F 254 REMARK 465 THR F 255 REMARK 465 GLY F 256 REMARK 465 LYS F 257 REMARK 465 ARG F 351 REMARK 465 ARG F 352 REMARK 465 LYS F 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN F 12 CG CD OE1 NE2 REMARK 470 GLU F 13 CG CD OE1 OE2 REMARK 470 GLN F 15 CG CD OE1 NE2 REMARK 470 ASP F 16 CG OD1 OD2 REMARK 470 GLU F 73 CG CD OE1 OE2 REMARK 470 ARG F 75 CG CD NE CZ NH1 NH2 REMARK 470 VAL F 183 CG1 CG2 REMARK 470 LYS F 191 CE NZ REMARK 470 ASP F 251 CG OD1 OD2 REMARK 470 GLU F 281 CG CD OE1 OE2 REMARK 470 ILE F 285 CG1 CG2 CD1 REMARK 470 LYS F 287 CD CE NZ REMARK 470 GLU F 288 CG CD OE1 OE2 REMARK 470 ASN F 289 CG OD1 ND2 REMARK 470 GLN F 292 CD OE1 NE2 REMARK 470 LYS F 293 CG CD CE NZ REMARK 470 GLU F 294 CG CD OE1 OE2 REMARK 470 GLU F 296 CG CD OE1 OE2 REMARK 470 LYS F 297 CG CD CE NZ REMARK 470 VAL F 298 CG1 CG2 REMARK 470 ARG F 300 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 307 CG CD OE1 OE2 REMARK 470 GLU F 330 CG CD OE1 OE2 REMARK 470 LYS F 350 CA C O CB CG CD CE REMARK 470 LYS F 350 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP F 86 CG TRP F 86 CD1 0.111 REMARK 500 PHE F 98 CE2 PHE F 98 CD2 -0.128 REMARK 500 PHE F 99 CG PHE F 99 CD1 -0.097 REMARK 500 SER F 109 CB SER F 109 OG -0.078 REMARK 500 PHE F 203 CG PHE F 203 CD2 0.120 REMARK 500 PHE F 203 CE1 PHE F 203 CZ 0.130 REMARK 500 GLU F 234 CD GLU F 234 OE1 -0.070 REMARK 500 SER F 323 CB SER F 323 OG -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG F 26 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG F 84 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG F 84 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU F 100 CB - CG - CD2 ANGL. DEV. = 11.9 DEGREES REMARK 500 GLN F 115 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG F 141 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG F 141 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP F 174 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG F 187 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG F 277 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG F 277 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN F 77 78.00 -69.34 REMARK 500 VAL F 124 -73.28 -96.51 REMARK 500 GLN F 180 128.61 -37.54 REMARK 500 ASN F 182 89.50 -154.65 REMARK 500 THR F 201 -53.28 -128.60 REMARK 500 GLN F 263 9.68 -66.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 F 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FPP F 402 DBREF 5JA0 F 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 5JA0 MET F -21 UNP P14324 INITIATING METHIONINE SEQADV 5JA0 GLY F -20 UNP P14324 EXPRESSION TAG SEQADV 5JA0 SER F -19 UNP P14324 EXPRESSION TAG SEQADV 5JA0 SER F -18 UNP P14324 EXPRESSION TAG SEQADV 5JA0 HIS F -17 UNP P14324 EXPRESSION TAG SEQADV 5JA0 HIS F -16 UNP P14324 EXPRESSION TAG SEQADV 5JA0 HIS F -15 UNP P14324 EXPRESSION TAG SEQADV 5JA0 HIS F -14 UNP P14324 EXPRESSION TAG SEQADV 5JA0 HIS F -13 UNP P14324 EXPRESSION TAG SEQADV 5JA0 HIS F -12 UNP P14324 EXPRESSION TAG SEQADV 5JA0 SER F -11 UNP P14324 EXPRESSION TAG SEQADV 5JA0 SER F -10 UNP P14324 EXPRESSION TAG SEQADV 5JA0 GLY F -9 UNP P14324 EXPRESSION TAG SEQADV 5JA0 ARG F -8 UNP P14324 EXPRESSION TAG SEQADV 5JA0 GLU F -7 UNP P14324 EXPRESSION TAG SEQADV 5JA0 ASN F -6 UNP P14324 EXPRESSION TAG SEQADV 5JA0 LEU F -5 UNP P14324 EXPRESSION TAG SEQADV 5JA0 TYR F -4 UNP P14324 EXPRESSION TAG SEQADV 5JA0 PHE F -3 UNP P14324 EXPRESSION TAG SEQADV 5JA0 GLN F -2 UNP P14324 EXPRESSION TAG SEQADV 5JA0 GLY F -1 UNP P14324 EXPRESSION TAG SEQADV 5JA0 HIS F 0 UNP P14324 EXPRESSION TAG SEQRES 1 F 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 F 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 F 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 F 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 F 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 F 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY SEQRES 7 F 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 F 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 F 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 F 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 F 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 F 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 F 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 F 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 F 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 F 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 F 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 F 375 LYS THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 F 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 F 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 F 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 F 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 F 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 F 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 F 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 F 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 F 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 F 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 F 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET PO4 F 401 5 HET FPP F 402 24 HETNAM PO4 PHOSPHATE ION HETNAM FPP FARNESYL DIPHOSPHATE FORMUL 2 PO4 O4 P 3- FORMUL 3 FPP C15 H28 O7 P2 FORMUL 4 HOH *182(H2 O) HELIX 1 AA1 TYR F 10 THR F 29 1 20 HELIX 2 AA2 ILE F 38 ALA F 53 1 16 HELIX 3 AA3 TYR F 58 VAL F 72 1 15 HELIX 4 AA4 ASP F 78 ASP F 107 1 30 HELIX 5 AA5 TRP F 118 LYS F 121 5 4 HELIX 6 AA6 VAL F 124 LEU F 126 5 3 HELIX 7 AA7 ASP F 127 ARG F 148 1 22 HELIX 8 AA8 TYR F 152 ALA F 178 1 27 HELIX 9 AA9 ASP F 184 PHE F 188 5 5 HELIX 10 AB1 THR F 189 THR F 201 1 13 HELIX 11 AB2 THR F 201 PHE F 206 1 6 HELIX 12 AB3 PHE F 206 ALA F 217 1 12 HELIX 13 AB4 GLY F 221 GLY F 250 1 30 HELIX 14 AB5 ASP F 261 ASN F 265 5 5 HELIX 15 AB6 SER F 268 ALA F 278 1 11 HELIX 16 AB7 THR F 279 TYR F 290 1 12 HELIX 17 AB8 GLU F 294 LEU F 308 1 15 HELIX 18 AB9 ASP F 309 ALA F 333 1 25 HELIX 19 AC1 PRO F 337 TYR F 349 1 13 SHEET 1 AA1 2 THR F 111 ARG F 112 0 SHEET 2 AA1 2 GLN F 115 ILE F 116 -1 O GLN F 115 N ARG F 112 CISPEP 1 ALA F 334 PRO F 335 0 10.77 SITE 1 AC1 9 GLY F 56 LYS F 57 GLN F 96 ARG F 113 SITE 2 AC1 9 FPP F 402 HOH F 528 HOH F 529 HOH F 537 SITE 3 AC1 9 HOH F 569 SITE 1 AC2 14 TYR F 10 LYS F 57 ASN F 59 ARG F 60 SITE 2 AC2 14 THR F 63 VAL F 66 SER F 205 PHE F 239 SITE 3 AC2 14 VAL F 340 LEU F 344 LYS F 347 PO4 F 401 SITE 4 AC2 14 HOH F 537 HOH F 611 CRYST1 110.890 110.890 77.480 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009018 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012907 0.00000