HEADER TOXIN 12-APR-16 5JA9 TITLE CRYSTAL STRUCTURE OF THE HIGB2 TOXIN IN COMPLEX WITH NB6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN HIGB-2; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NANOBODY 6; COMPND 7 CHAIN: A, B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39315 SOURCE 3 / EL TOR INABA N16961); SOURCE 4 ORGANISM_TAXID: 243277; SOURCE 5 STRAIN: ATCC 39315 / EL TOR INABA N16961; SOURCE 6 GENE: HIGB-2, VC_A0468; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 11 ORGANISM_TAXID: 9844; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOXIN-ANTITOXIN SYSTEM, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR S.HADZI,R.LORIS REVDAT 2 17-MAY-17 5JA9 1 JRNL REVDAT 1 05-APR-17 5JA9 0 JRNL AUTH S.HADZI,A.GARCIA-PINO,S.HAESAERTS,D.JURENAS,K.GERDES,J.LAH, JRNL AUTH 2 R.LORIS JRNL TITL RIBOSOME-DEPENDENT VIBRIO CHOLERAE MRNASE HIGB2 IS REGULATED JRNL TITL 2 BY A BETA-STRAND SLIDING MECHANISM. JRNL REF NUCLEIC ACIDS RES. V. 45 4972 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28334932 JRNL DOI 10.1093/NAR/GKX138 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 38387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3628 - 4.4547 0.99 2782 146 0.1604 0.1955 REMARK 3 2 4.4547 - 3.5363 1.00 2751 145 0.1494 0.1919 REMARK 3 3 3.5363 - 3.0894 1.00 2741 144 0.1763 0.2374 REMARK 3 4 3.0894 - 2.8070 1.00 2722 143 0.1944 0.2603 REMARK 3 5 2.8070 - 2.6058 0.99 2709 142 0.2038 0.2709 REMARK 3 6 2.6058 - 2.4522 0.99 2713 142 0.2089 0.2431 REMARK 3 7 2.4522 - 2.3294 1.00 2698 142 0.2136 0.2753 REMARK 3 8 2.3294 - 2.2280 1.00 2703 142 0.2096 0.2801 REMARK 3 9 2.2280 - 2.1422 1.00 2714 143 0.2205 0.3051 REMARK 3 10 2.1422 - 2.0683 0.99 2689 142 0.2503 0.2436 REMARK 3 11 2.0683 - 2.0036 0.99 2689 142 0.2716 0.3091 REMARK 3 12 2.0036 - 1.9464 0.91 2459 130 0.2960 0.3000 REMARK 3 13 1.9464 - 1.8951 0.82 2205 114 0.3469 0.3626 REMARK 3 14 1.8951 - 1.8489 0.70 1896 99 0.3937 0.3698 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3722 REMARK 3 ANGLE : 1.022 5037 REMARK 3 CHIRALITY : 0.046 529 REMARK 3 PLANARITY : 0.005 654 REMARK 3 DIHEDRAL : 12.735 1328 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2678 32.7941 -31.4919 REMARK 3 T TENSOR REMARK 3 T11: 0.4408 T22: 0.6457 REMARK 3 T33: 0.3215 T12: -0.0500 REMARK 3 T13: 0.0364 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 4.4309 L22: 4.0863 REMARK 3 L33: 7.0020 L12: 1.6523 REMARK 3 L13: -0.8744 L23: -2.0313 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: 1.1055 S13: 0.0056 REMARK 3 S21: -0.3728 S22: -0.0891 S23: -0.5092 REMARK 3 S31: -0.3007 S32: 0.8646 S33: 0.0893 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7431 2.9851 -32.6512 REMARK 3 T TENSOR REMARK 3 T11: 0.5099 T22: 0.6754 REMARK 3 T33: 0.3190 T12: -0.0481 REMARK 3 T13: 0.0291 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 6.5404 L22: 3.8770 REMARK 3 L33: 2.2611 L12: 1.0849 REMARK 3 L13: -0.0725 L23: -1.7785 REMARK 3 S TENSOR REMARK 3 S11: -0.3173 S12: 0.7603 S13: 0.0912 REMARK 3 S21: -0.3413 S22: -0.0346 S23: -0.4471 REMARK 3 S31: -0.3492 S32: 0.3680 S33: 0.2816 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3364 28.6783 -8.2417 REMARK 3 T TENSOR REMARK 3 T11: 0.2874 T22: 0.0835 REMARK 3 T33: 0.2749 T12: 0.0121 REMARK 3 T13: 0.0081 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 3.6447 L22: 1.2926 REMARK 3 L33: 1.8654 L12: 1.1147 REMARK 3 L13: -0.1144 L23: 0.1529 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.0508 S13: 0.0654 REMARK 3 S21: -0.0799 S22: -0.0254 S23: 0.1305 REMARK 3 S31: -0.0657 S32: -0.0530 S33: 0.0599 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8517 -0.7143 -10.0424 REMARK 3 T TENSOR REMARK 3 T11: 0.3015 T22: 0.1186 REMARK 3 T33: 0.2787 T12: 0.0462 REMARK 3 T13: 0.0136 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 3.5301 L22: 2.1141 REMARK 3 L33: 1.5394 L12: 0.7061 REMARK 3 L13: 0.2977 L23: -0.4206 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: 0.1516 S13: -0.1744 REMARK 3 S21: -0.0689 S22: 0.1220 S23: 0.0352 REMARK 3 S31: 0.1000 S32: -0.0162 S33: -0.0952 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID A REMARK 3 SELECTION : CHAIN B AND SEGID B REMARK 3 ATOM PAIRS NUMBER : 1056 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C AND SEGID C REMARK 3 SELECTION : CHAIN D AND SEGID D REMARK 3 ATOM PAIRS NUMBER : 917 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220186. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979030 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38530 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.849 REMARK 200 RESOLUTION RANGE LOW (A) : 49.404 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.440 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 10% (W/V) PEG8000, REMARK 280 8% (W/V) ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.20000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 LYS C 55 REMARK 465 GLY C 56 REMARK 465 LYS C 57 REMARK 465 GLY C 58 REMARK 465 LYS C 59 REMARK 465 ARG C 60 REMARK 465 GLY C 61 REMARK 465 SER C 110 REMARK 465 MET D 1 REMARK 465 LYS D 55 REMARK 465 GLY D 56 REMARK 465 LYS D 57 REMARK 465 GLY D 58 REMARK 465 LYS D 59 REMARK 465 ARG D 60 REMARK 465 GLY D 61 REMARK 465 GLN D 109 REMARK 465 SER D 110 REMARK 465 HIS B 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER C 54 OG REMARK 470 GLU C 72 CG CD OE1 OE2 REMARK 470 LYS C 73 CG CD CE NZ REMARK 470 ARG C 74 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 84 CG CD CE NZ REMARK 470 ASN C 85 CG OD1 ND2 REMARK 470 ASN C 93 CG OD1 ND2 REMARK 470 LYS C 96 CG CD CE NZ REMARK 470 GLN C 109 CG CD OE1 NE2 REMARK 470 LYS D 2 CG CD CE NZ REMARK 470 GLU D 72 CG CD OE1 OE2 REMARK 470 LYS D 73 CG CD CE NZ REMARK 470 ARG D 74 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 84 CG CD CE NZ REMARK 470 LYS D 96 CG CD CE NZ REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 116 N CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 305 O HOH D 312 2.11 REMARK 500 O2 SO4 A 201 O HOH A 301 2.14 REMARK 500 NH2 ARG B 68 OD2 ASP B 91 2.16 REMARK 500 NH1 ARG A 46 O HOH A 302 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP C 71 OH TYR D 68 2554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 74 83.87 -69.22 REMARK 500 ALA A 93 164.62 174.71 REMARK 500 ALA B 93 165.31 174.15 REMARK 500 HIS B 119 -111.68 65.63 REMARK 500 HIS B 120 159.50 71.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 122 HIS B 123 135.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 DBREF 5JA9 C 1 110 UNP Q9KMA6 HIGB2_VIBCH 1 110 DBREF 5JA9 D 1 110 UNP Q9KMA6 HIGB2_VIBCH 1 110 DBREF 5JA9 A 2 124 PDB 5JA9 5JA9 2 124 DBREF 5JA9 B 2 124 PDB 5JA9 5JA9 2 124 SEQRES 1 C 110 MET LYS SER VAL PHE VAL GLU SER THR ILE PHE GLU LYS SEQRES 2 C 110 TYR ARG ASP GLU TYR LEU SER ASP GLU GLU TYR ARG LEU SEQRES 3 C 110 PHE GLN ALA GLU LEU MET LEU ASN PRO LYS LEU GLY ASP SEQRES 4 C 110 VAL ILE GLN GLY THR GLY GLY LEU ARG LYS ILE ARG VAL SEQRES 5 C 110 ALA SER LYS GLY LYS GLY LYS ARG GLY GLY SER ARG ILE SEQRES 6 C 110 ILE TYR TYR PHE LEU ASP GLU LYS ARG ARG PHE TYR LEU SEQRES 7 C 110 LEU THR ILE TYR GLY LYS ASN GLU MET SER ASP LEU ASN SEQRES 8 C 110 ALA ASN GLN ARG LYS GLN LEU MET ALA PHE MET GLU ALA SEQRES 9 C 110 TRP ARG ASN GLU GLN SER SEQRES 1 D 110 MET LYS SER VAL PHE VAL GLU SER THR ILE PHE GLU LYS SEQRES 2 D 110 TYR ARG ASP GLU TYR LEU SER ASP GLU GLU TYR ARG LEU SEQRES 3 D 110 PHE GLN ALA GLU LEU MET LEU ASN PRO LYS LEU GLY ASP SEQRES 4 D 110 VAL ILE GLN GLY THR GLY GLY LEU ARG LYS ILE ARG VAL SEQRES 5 D 110 ALA SER LYS GLY LYS GLY LYS ARG GLY GLY SER ARG ILE SEQRES 6 D 110 ILE TYR TYR PHE LEU ASP GLU LYS ARG ARG PHE TYR LEU SEQRES 7 D 110 LEU THR ILE TYR GLY LYS ASN GLU MET SER ASP LEU ASN SEQRES 8 D 110 ALA ASN GLN ARG LYS GLN LEU MET ALA PHE MET GLU ALA SEQRES 9 D 110 TRP ARG ASN GLU GLN SER SEQRES 1 A 123 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 123 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 123 PHE THR PHE SER ASN TYR ALA MET ARG TRP TYR ARG GLN SEQRES 4 A 123 ALA PRO GLY GLU GLU ARG GLU PHE VAL ALA PHE ILE SER SEQRES 5 A 123 SER VAL GLY GLY SER THR ASN TYR ALA ASP SER VAL LYS SEQRES 6 A 123 GLY ARG PHE THR ILE SER ARG ASP ASN GLY LYS ASN THR SEQRES 7 A 123 LEU TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 A 123 ALA VAL TYR PHE CYS VAL ALA ARG LEU SER LEU ILE SER SEQRES 9 A 123 ASP SER TRP GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 10 A 123 HIS HIS HIS HIS HIS HIS SEQRES 1 B 123 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 123 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 123 PHE THR PHE SER ASN TYR ALA MET ARG TRP TYR ARG GLN SEQRES 4 B 123 ALA PRO GLY GLU GLU ARG GLU PHE VAL ALA PHE ILE SER SEQRES 5 B 123 SER VAL GLY GLY SER THR ASN TYR ALA ASP SER VAL LYS SEQRES 6 B 123 GLY ARG PHE THR ILE SER ARG ASP ASN GLY LYS ASN THR SEQRES 7 B 123 LEU TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 123 ALA VAL TYR PHE CYS VAL ALA ARG LEU SER LEU ILE SER SEQRES 9 B 123 ASP SER TRP GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 10 B 123 HIS HIS HIS HIS HIS HIS HET SO4 C 201 5 HET SO4 C 202 5 HET SO4 C 203 5 HET SO4 D 201 5 HET SO4 D 202 5 HET SO4 A 201 5 HET EDO A 202 10 HET SO4 B 201 5 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 SO4 7(O4 S 2-) FORMUL 11 EDO C2 H6 O2 FORMUL 13 HOH *154(H2 O) HELIX 1 AA1 SER C 8 LEU C 19 1 12 HELIX 2 AA2 SER C 20 ASN C 34 1 15 HELIX 3 AA3 ASN C 91 GLU C 108 1 18 HELIX 4 AA4 SER D 8 LEU D 19 1 12 HELIX 5 AA5 SER D 20 ASN D 34 1 15 HELIX 6 AA6 ASN D 91 GLU D 108 1 18 HELIX 7 AA7 THR A 29 TYR A 33 5 5 HELIX 8 AA8 LYS A 88 THR A 92 5 5 HELIX 9 AA9 HIS A 119 HIS A 124 5 6 HELIX 10 AB1 THR B 29 TYR B 33 5 5 HELIX 11 AB2 ASP B 63 LYS B 66 5 4 HELIX 12 AB3 LYS B 88 THR B 92 5 5 SHEET 1 AA1 5 PHE C 5 GLU C 7 0 SHEET 2 AA1 5 ARG C 75 GLY C 83 1 O PHE C 76 N VAL C 6 SHEET 3 AA1 5 SER C 63 LEU C 70 -1 N TYR C 68 O TYR C 77 SHEET 4 AA1 5 ARG C 48 VAL C 52 -1 N VAL C 52 O SER C 63 SHEET 5 AA1 5 ASP C 39 VAL C 40 -1 N ASP C 39 O LYS C 49 SHEET 1 AA2 5 PHE D 5 GLU D 7 0 SHEET 2 AA2 5 ARG D 75 GLY D 83 1 O LEU D 78 N VAL D 6 SHEET 3 AA2 5 SER D 63 LEU D 70 -1 N ARG D 64 O TYR D 82 SHEET 4 AA2 5 LEU D 47 VAL D 52 -1 N ARG D 48 O TYR D 67 SHEET 5 AA2 5 ASP D 39 ILE D 41 -1 N ASP D 39 O LYS D 49 SHEET 1 AA3 4 GLN A 4 SER A 8 0 SHEET 2 AA3 4 LEU A 19 SER A 26 -1 O ALA A 24 N GLN A 6 SHEET 3 AA3 4 THR A 79 MET A 84 -1 O MET A 84 N LEU A 19 SHEET 4 AA3 4 PHE A 69 ASP A 74 -1 N SER A 72 O TYR A 81 SHEET 1 AA4 6 GLY A 11 VAL A 13 0 SHEET 2 AA4 6 THR A 112 VAL A 116 1 O THR A 115 N GLY A 11 SHEET 3 AA4 6 ALA A 93 ARG A 100 -1 N TYR A 95 O THR A 112 SHEET 4 AA4 6 MET A 35 GLN A 40 -1 N TYR A 38 O PHE A 96 SHEET 5 AA4 6 GLU A 47 ILE A 52 -1 O GLU A 47 N ARG A 39 SHEET 6 AA4 6 THR A 59 TYR A 61 -1 O ASN A 60 N PHE A 51 SHEET 1 AA5 4 GLY A 11 VAL A 13 0 SHEET 2 AA5 4 THR A 112 VAL A 116 1 O THR A 115 N GLY A 11 SHEET 3 AA5 4 ALA A 93 ARG A 100 -1 N TYR A 95 O THR A 112 SHEET 4 AA5 4 ASP A 106 TRP A 108 -1 O SER A 107 N ALA A 99 SHEET 1 AA6 4 GLN B 4 SER B 8 0 SHEET 2 AA6 4 LEU B 19 SER B 26 -1 O SER B 22 N SER B 8 SHEET 3 AA6 4 THR B 79 MET B 84 -1 O MET B 84 N LEU B 19 SHEET 4 AA6 4 PHE B 69 ASP B 74 -1 N SER B 72 O TYR B 81 SHEET 1 AA7 6 GLY B 11 VAL B 13 0 SHEET 2 AA7 6 THR B 112 VAL B 116 1 O THR B 115 N GLY B 11 SHEET 3 AA7 6 ALA B 93 ARG B 100 -1 N TYR B 95 O THR B 112 SHEET 4 AA7 6 MET B 35 GLN B 40 -1 N TYR B 38 O PHE B 96 SHEET 5 AA7 6 GLU B 47 ILE B 52 -1 O GLU B 47 N ARG B 39 SHEET 6 AA7 6 THR B 59 TYR B 61 -1 O ASN B 60 N PHE B 51 SHEET 1 AA8 4 GLY B 11 VAL B 13 0 SHEET 2 AA8 4 THR B 112 VAL B 116 1 O THR B 115 N GLY B 11 SHEET 3 AA8 4 ALA B 93 ARG B 100 -1 N TYR B 95 O THR B 112 SHEET 4 AA8 4 ASP B 106 TRP B 108 -1 O SER B 107 N ALA B 99 SSBOND 1 CYS A 23 CYS A 97 1555 1555 2.07 SSBOND 2 CYS B 23 CYS B 97 1555 1555 2.06 SITE 1 AC1 4 LYS C 49 ARG C 51 ARG C 64 SER C 88 SITE 1 AC2 2 GLY C 62 ARG C 64 SITE 1 AC3 1 GLN C 42 SITE 1 AC4 3 LYS D 49 ARG D 64 HOH D 306 SITE 1 AC5 2 LYS D 36 ARG D 48 SITE 1 AC6 3 THR A 29 TYR A 33 HOH A 301 SITE 1 AC7 4 PHE A 51 ASN A 60 GLU C 17 GLU C 86 SITE 1 AC8 4 PHE B 28 THR B 29 TYR B 33 HOH B 301 CRYST1 45.760 60.400 88.590 90.00 104.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021853 0.000000 0.005554 0.00000 SCALE2 0.000000 0.016556 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011647 0.00000