HEADER PROTEIN BINDING 13-APR-16 5JBV TITLE LYS27-LINKED TRIUBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: D-UBIQUITIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606 KEYWDS RACEMIC CRYSTAL, SYNTHETIC PROTEIN, UBIQUITIN CHAINS, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.PAN,S.GAO,Y.ZHENG REVDAT 3 09-FEB-22 5JBV 1 REMARK REVDAT 2 04-OCT-17 5JBV 1 REMARK REVDAT 1 18-MAY-16 5JBV 0 JRNL AUTH M.PAN,S.GAO,Y.ZHENG JRNL TITL STRUCTURE OF LYS27-LINKED TRIUBIQUITIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 63.4 REMARK 3 NUMBER OF REFLECTIONS : 10189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.5658 - 3.0327 0.82 4180 199 0.2273 0.2809 REMARK 3 2 3.0327 - 2.4080 0.79 4049 208 0.3285 0.3441 REMARK 3 3 2.4080 - 2.1039 0.29 1475 78 0.3403 0.3902 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1182 REMARK 3 ANGLE : 0.634 1589 REMARK 3 CHIRALITY : 0.035 190 REMARK 3 PLANARITY : 0.002 205 REMARK 3 DIHEDRAL : 15.985 463 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2314 10.3509 4.1484 REMARK 3 T TENSOR REMARK 3 T11: 0.1652 T22: 0.1468 REMARK 3 T33: 0.3480 T12: 0.0013 REMARK 3 T13: 0.1336 T23: 0.3653 REMARK 3 L TENSOR REMARK 3 L11: 0.1096 L22: 0.3060 REMARK 3 L33: 0.2374 L12: 0.0673 REMARK 3 L13: -0.1890 L23: 0.0229 REMARK 3 S TENSOR REMARK 3 S11: 0.0945 S12: -0.3468 S13: 0.0093 REMARK 3 S21: -0.0411 S22: -0.5821 S23: 0.2064 REMARK 3 S31: 0.0568 S32: -1.5898 S33: 0.0265 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2978 7.4389 9.6313 REMARK 3 T TENSOR REMARK 3 T11: 0.2736 T22: 0.5239 REMARK 3 T33: 0.7922 T12: 0.1045 REMARK 3 T13: 0.3189 T23: 0.1500 REMARK 3 L TENSOR REMARK 3 L11: 0.0028 L22: 0.0305 REMARK 3 L33: 0.2131 L12: 0.0123 REMARK 3 L13: -0.0189 L23: 0.0988 REMARK 3 S TENSOR REMARK 3 S11: 0.2655 S12: -0.9669 S13: 0.6803 REMARK 3 S21: 0.4498 S22: -0.3046 S23: 0.4686 REMARK 3 S31: -0.0283 S32: -0.0740 S33: 0.1094 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7995 16.7580 9.1575 REMARK 3 T TENSOR REMARK 3 T11: 0.3693 T22: 0.2923 REMARK 3 T33: 0.3634 T12: 0.0875 REMARK 3 T13: 0.0612 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.8594 L22: 0.1654 REMARK 3 L33: 0.8549 L12: -0.4050 REMARK 3 L13: 0.4155 L23: -0.2587 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: 0.0716 S13: 0.8420 REMARK 3 S21: 1.2593 S22: 0.1791 S23: 0.0278 REMARK 3 S31: -1.1382 S32: 0.3244 S33: -0.1269 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0168 7.2232 14.1779 REMARK 3 T TENSOR REMARK 3 T11: 0.2275 T22: 0.4405 REMARK 3 T33: 0.3684 T12: 0.0047 REMARK 3 T13: 0.1215 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 0.8144 L22: 0.4007 REMARK 3 L33: 1.0525 L12: -0.1022 REMARK 3 L13: 0.7520 L23: -0.0292 REMARK 3 S TENSOR REMARK 3 S11: -0.6769 S12: -0.4114 S13: -0.4612 REMARK 3 S21: -0.1960 S22: 0.2498 S23: 0.0258 REMARK 3 S31: -0.3095 S32: -0.3167 S33: -0.1222 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0463 9.3642 2.7212 REMARK 3 T TENSOR REMARK 3 T11: 0.3130 T22: 0.3010 REMARK 3 T33: 0.2282 T12: -0.0398 REMARK 3 T13: -0.0609 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 0.1949 L22: 0.1306 REMARK 3 L33: 0.0493 L12: -0.0109 REMARK 3 L13: -0.1028 L23: -0.1281 REMARK 3 S TENSOR REMARK 3 S11: -0.1636 S12: 0.1549 S13: -0.1480 REMARK 3 S21: 0.1334 S22: 0.0778 S23: 0.2357 REMARK 3 S31: -0.4097 S32: 0.2865 S33: -0.0014 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4034 13.2861 -3.0778 REMARK 3 T TENSOR REMARK 3 T11: 0.3141 T22: 0.2998 REMARK 3 T33: 0.2562 T12: 0.0166 REMARK 3 T13: 0.0267 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 0.0491 L22: 0.1315 REMARK 3 L33: 0.1367 L12: 0.0592 REMARK 3 L13: -0.0200 L23: 0.1141 REMARK 3 S TENSOR REMARK 3 S11: 0.1826 S12: 0.0362 S13: 0.8503 REMARK 3 S21: -0.1993 S22: -0.2391 S23: 0.0375 REMARK 3 S31: -0.4945 S32: -0.2516 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5999 3.8828 7.4341 REMARK 3 T TENSOR REMARK 3 T11: 0.3916 T22: 0.2960 REMARK 3 T33: 0.3704 T12: 0.0128 REMARK 3 T13: 0.0043 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.0276 L22: 0.0411 REMARK 3 L33: 0.0268 L12: -0.0283 REMARK 3 L13: -0.0605 L23: -0.0282 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: -0.4040 S13: -0.4238 REMARK 3 S21: -0.1647 S22: -0.2306 S23: 0.6518 REMARK 3 S31: 0.8499 S32: -0.1046 S33: -0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5527 -1.6869 14.7583 REMARK 3 T TENSOR REMARK 3 T11: 0.7661 T22: 0.7880 REMARK 3 T33: 0.5600 T12: -0.1540 REMARK 3 T13: -0.0992 T23: 0.0986 REMARK 3 L TENSOR REMARK 3 L11: 0.0215 L22: 0.0418 REMARK 3 L33: 0.0433 L12: 0.0032 REMARK 3 L13: -0.0169 L23: 0.0492 REMARK 3 S TENSOR REMARK 3 S11: -0.2015 S12: -0.3032 S13: 0.4254 REMARK 3 S21: -0.3196 S22: -0.1209 S23: 0.5897 REMARK 3 S31: -0.3575 S32: 0.3253 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0694 -3.4486 -14.5232 REMARK 3 T TENSOR REMARK 3 T11: 0.2938 T22: 0.2951 REMARK 3 T33: 0.2397 T12: -0.0039 REMARK 3 T13: -0.0171 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.6554 L22: 0.8267 REMARK 3 L33: 0.7702 L12: 0.0754 REMARK 3 L13: -0.3963 L23: 0.0028 REMARK 3 S TENSOR REMARK 3 S11: -0.1480 S12: 0.0167 S13: 0.1501 REMARK 3 S21: -0.3472 S22: -0.0189 S23: 0.0565 REMARK 3 S31: -0.0426 S32: -0.1519 S33: -0.0008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10189 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.104 REMARK 200 RESOLUTION RANGE LOW (A) : 22.565 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.8 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350, 4MM CDCL2, PH 5.9, REMARK 280 200MM MG(NO3)2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.87900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.94125 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.08400 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 25.87900 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 14.94125 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.08400 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 25.87900 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 14.94125 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.08400 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.88250 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 92.16800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.88250 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 92.16800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.88250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 92.16800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 243 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DAR B 72 REMARK 465 DLE B 73 REMARK 465 DAR B 74 REMARK 465 GLY B 75 REMARK 465 DAL B 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 206 O HOH A 207 1.82 REMARK 500 O HOH B 229 O HOH B 236 1.84 REMARK 500 OD1 DSG B 25 O HOH B 201 1.85 REMARK 500 O GLY A 53 O HOH A 201 1.95 REMARK 500 O HOH B 206 O HOH B 241 2.02 REMARK 500 OD1 DAS B 52 O HOH B 202 2.12 REMARK 500 O HOH A 220 O HOH A 226 2.14 REMARK 500 NZ DLY B 63 O HOH B 203 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 225 O HOH B 238 2555 1.85 REMARK 500 O HOH A 225 O HOH B 239 2565 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 90.67 49.26 REMARK 500 LEU A 73 -70.69 -55.52 REMARK 500 DGN B 62 169.68 121.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JBY RELATED DB: PDB DBREF 5JBV A 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 5JBV B 1 76 PDB 5JBV 5JBV 1 76 SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 76 DNE DGN DIL DPN DVA DLY DTH DLE DTH GLY DLY DTH DIL SEQRES 2 B 76 DTH DLE DGL DVA DGL DPR DSN DAS DTH DIL DGL DSG DVA SEQRES 3 B 76 DLY DAL DLY DIL DGN DAS DLY DGL GLY DIL DPR DPR DAS SEQRES 4 B 76 DGN DGN DAR DLE DIL DPN DAL GLY DLY DGN DLE DGL DAS SEQRES 5 B 76 GLY DAR DTH DLE DSN DAS DTY DSG DIL DGN DLY DGL DSN SEQRES 6 B 76 DTH DLE DHI DLE DVA DLE DAR DLE DAR GLY DAL HET DNE B 1 8 HET DGN B 2 9 HET DIL B 3 8 HET DPN B 4 11 HET DVA B 5 7 HET DLY B 6 9 HET DTH B 7 7 HET DLE B 8 8 HET DTH B 9 7 HET DLY B 11 9 HET DTH B 12 7 HET DIL B 13 8 HET DTH B 14 7 HET DLE B 15 8 HET DGL B 16 9 HET DVA B 17 7 HET DGL B 18 9 HET DPR B 19 7 HET DSN B 20 6 HET DAS B 21 8 HET DTH B 22 7 HET DIL B 23 8 HET DGL B 24 9 HET DSG B 25 8 HET DVA B 26 7 HET DLY B 27 9 HET DAL B 28 5 HET DLY B 29 9 HET DIL B 30 8 HET DGN B 31 9 HET DAS B 32 8 HET DLY B 33 9 HET DGL B 34 9 HET DIL B 36 8 HET DPR B 37 7 HET DPR B 38 7 HET DAS B 39 8 HET DGN B 40 9 HET DGN B 41 9 HET DAR B 42 11 HET DLE B 43 8 HET DIL B 44 8 HET DPN B 45 11 HET DAL B 46 5 HET DLY B 48 9 HET DGN B 49 9 HET DLE B 50 8 HET DGL B 51 9 HET DAS B 52 8 HET DAR B 54 11 HET DTH B 55 7 HET DLE B 56 8 HET DSN B 57 6 HET DAS B 58 8 HET DTY B 59 12 HET DSG B 60 8 HET DIL B 61 8 HET DGN B 62 9 HET DLY B 63 9 HET DGL B 64 9 HET DSN B 65 6 HET DTH B 66 7 HET DLE B 67 8 HET DHI B 68 10 HET DLE B 69 8 HET DVA B 70 7 HET DLE B 71 8 HET NO3 A 101 4 HET NO3 B 101 4 HETNAM DNE D-NORLEUCINE HETNAM DGN D-GLUTAMINE HETNAM DIL D-ISOLEUCINE HETNAM DPN D-PHENYLALANINE HETNAM DVA D-VALINE HETNAM DLY D-LYSINE HETNAM DTH D-THREONINE HETNAM DLE D-LEUCINE HETNAM DGL D-GLUTAMIC ACID HETNAM DPR D-PROLINE HETNAM DSN D-SERINE HETNAM DAS D-ASPARTIC ACID HETNAM DSG D-ASPARAGINE HETNAM DAL D-ALANINE HETNAM DAR D-ARGININE HETNAM DTY D-TYROSINE HETNAM DHI D-HISTIDINE HETNAM NO3 NITRATE ION FORMUL 2 DNE C6 H13 N O2 FORMUL 2 DGN 6(C5 H10 N2 O3) FORMUL 2 DIL 7(C6 H13 N O2) FORMUL 2 DPN 2(C9 H11 N O2) FORMUL 2 DVA 4(C5 H11 N O2) FORMUL 2 DLY 7(C6 H14 N2 O2) FORMUL 2 DTH 7(C4 H9 N O3) FORMUL 2 DLE 8(C6 H13 N O2) FORMUL 2 DGL 6(C5 H9 N O4) FORMUL 2 DPR 3(C5 H9 N O2) FORMUL 2 DSN 3(C3 H7 N O3) FORMUL 2 DAS 5(C4 H7 N O4) FORMUL 2 DSG 2(C4 H8 N2 O3) FORMUL 2 DAL 2(C3 H7 N O2) FORMUL 2 DAR 2(C6 H15 N4 O2 1+) FORMUL 2 DTY C9 H11 N O3 FORMUL 2 DHI C6 H10 N3 O2 1+ FORMUL 3 NO3 2(N O3 1-) FORMUL 5 HOH *71(H2 O) HELIX 1 AA1 THR A 22 GLU A 34 1 13 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 LEU A 56 ASN A 60 5 5 HELIX 4 AA4 DTH B 22 GLY B 35 1 14 HELIX 5 AA5 DPR B 37 DGN B 41 5 5 HELIX 6 AA6 DTH B 55 DSG B 60 5 6 SHEET 1 AA1 5 GLY A 10 GLU A 16 0 SHEET 2 AA1 5 GLN A 2 THR A 7 -1 N ILE A 3 O LEU A 15 SHEET 3 AA1 5 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 AA1 5 GLN A 41 PHE A 45 -1 N ARG A 42 O VAL A 70 SHEET 5 AA1 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 AA2 5 DTH B 12 DGL B 16 0 SHEET 2 AA2 5 DGN B 2 DTH B 7 -1 N DIL B 3 O DLE B 15 SHEET 3 AA2 5 DTH B 66 DVA B 70 1 O DLE B 67 N DPN B 4 SHEET 4 AA2 5 DAR B 42 DPN B 45 -1 N DIL B 44 O DHI B 68 SHEET 5 AA2 5 DLY B 48 DGN B 49 -1 O DLY B 48 N DPN B 45 LINK C DNE B 1 N DGN B 2 1555 1555 1.33 LINK C DGN B 2 N DIL B 3 1555 1555 1.33 LINK C DIL B 3 N DPN B 4 1555 1555 1.33 LINK C DPN B 4 N DVA B 5 1555 1555 1.33 LINK C DVA B 5 N DLY B 6 1555 1555 1.33 LINK C DLY B 6 N DTH B 7 1555 1555 1.33 LINK C DTH B 7 N DLE B 8 1555 1555 1.33 LINK C DLE B 8 N DTH B 9 1555 1555 1.33 LINK C DTH B 9 N GLY B 10 1555 1555 1.33 LINK C GLY B 10 N DLY B 11 1555 1555 1.33 LINK C DLY B 11 N DTH B 12 1555 1555 1.33 LINK C DTH B 12 N DIL B 13 1555 1555 1.33 LINK C DIL B 13 N DTH B 14 1555 1555 1.33 LINK C DTH B 14 N DLE B 15 1555 1555 1.33 LINK C DLE B 15 N DGL B 16 1555 1555 1.33 LINK C DGL B 16 N DVA B 17 1555 1555 1.33 LINK C DVA B 17 N DGL B 18 1555 1555 1.33 LINK C DGL B 18 N DPR B 19 1555 1555 1.34 LINK C DPR B 19 N DSN B 20 1555 1555 1.33 LINK C DSN B 20 N DAS B 21 1555 1555 1.33 LINK C DAS B 21 N DTH B 22 1555 1555 1.33 LINK C DTH B 22 N DIL B 23 1555 1555 1.33 LINK C DIL B 23 N DGL B 24 1555 1555 1.33 LINK C DGL B 24 N DSG B 25 1555 1555 1.33 LINK C DSG B 25 N DVA B 26 1555 1555 1.33 LINK C DVA B 26 N DLY B 27 1555 1555 1.33 LINK C DLY B 27 N DAL B 28 1555 1555 1.33 LINK C DAL B 28 N DLY B 29 1555 1555 1.33 LINK C DLY B 29 N DIL B 30 1555 1555 1.33 LINK C DIL B 30 N DGN B 31 1555 1555 1.33 LINK C DGN B 31 N DAS B 32 1555 1555 1.33 LINK C DAS B 32 N DLY B 33 1555 1555 1.33 LINK C DLY B 33 N DGL B 34 1555 1555 1.33 LINK C DGL B 34 N GLY B 35 1555 1555 1.33 LINK C GLY B 35 N DIL B 36 1555 1555 1.33 LINK C DIL B 36 N DPR B 37 1555 1555 1.34 LINK C DPR B 37 N DPR B 38 1555 1555 1.34 LINK C DPR B 38 N DAS B 39 1555 1555 1.33 LINK C DAS B 39 N DGN B 40 1555 1555 1.33 LINK C DGN B 40 N DGN B 41 1555 1555 1.33 LINK C DGN B 41 N DAR B 42 1555 1555 1.33 LINK C DAR B 42 N DLE B 43 1555 1555 1.33 LINK C DLE B 43 N DIL B 44 1555 1555 1.33 LINK C DIL B 44 N DPN B 45 1555 1555 1.33 LINK C DPN B 45 N DAL B 46 1555 1555 1.33 LINK C DAL B 46 N GLY B 47 1555 1555 1.33 LINK C GLY B 47 N DLY B 48 1555 1555 1.33 LINK C DLY B 48 N DGN B 49 1555 1555 1.33 LINK C DGN B 49 N DLE B 50 1555 1555 1.33 LINK C DLE B 50 N DGL B 51 1555 1555 1.33 LINK C DGL B 51 N DAS B 52 1555 1555 1.33 LINK C DAS B 52 N GLY B 53 1555 1555 1.33 LINK C GLY B 53 N DAR B 54 1555 1555 1.33 LINK C DAR B 54 N DTH B 55 1555 1555 1.33 LINK C DTH B 55 N DLE B 56 1555 1555 1.33 LINK C DLE B 56 N DSN B 57 1555 1555 1.33 LINK C DSN B 57 N DAS B 58 1555 1555 1.33 LINK C DAS B 58 N DTY B 59 1555 1555 1.33 LINK C DTY B 59 N DSG B 60 1555 1555 1.33 LINK C DSG B 60 N DIL B 61 1555 1555 1.33 LINK C DIL B 61 N DGN B 62 1555 1555 1.33 LINK C DGN B 62 N DLY B 63 1555 1555 1.33 LINK C DLY B 63 N DGL B 64 1555 1555 1.33 LINK C DGL B 64 N DSN B 65 1555 1555 1.33 LINK C DSN B 65 N DTH B 66 1555 1555 1.33 LINK C DTH B 66 N DLE B 67 1555 1555 1.33 LINK C DLE B 67 N DHI B 68 1555 1555 1.33 LINK C DHI B 68 N DLE B 69 1555 1555 1.33 LINK C DLE B 69 N DVA B 70 1555 1555 1.33 LINK C DVA B 70 N DLE B 71 1555 1555 1.33 SITE 1 AC1 12 ILE A 44 PHE A 45 ALA A 46 GLY A 47 SITE 2 AC1 12 HIS A 68 HOH A 203 HOH A 205 HOH A 206 SITE 3 AC1 12 HOH A 207 DAS B 58 DTY B 59 DSG B 60 SITE 1 AC2 8 ASP A 58 ASN A 60 HOH A 219 DIL B 44 SITE 2 AC2 8 DPN B 45 DAL B 46 GLY B 47 DHI B 68 CRYST1 51.758 51.758 138.252 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019321 0.011155 0.000000 0.00000 SCALE2 0.000000 0.022310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007233 0.00000