HEADER LYASE 14-APR-16 5JBX TITLE CRYSTAL STRUCTURE OF LIUC IN COMPLEX WITH COENZYME A AND MALONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXYBUTYRYL-COA DEHYDRATASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 4.2.1.55; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS (STRAIN DK 1622); SOURCE 3 ORGANISM_TAXID: 246197; SOURCE 4 STRAIN: DK 1622; SOURCE 5 GENE: CRT, MXAN_3757; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDRATASE, ISOVALERATE, MYXOCOCCUS XANTHUS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.BOCK,J.REICHELT,R.MUELLER,W.BLANKENFELDT REVDAT 3 10-JAN-24 5JBX 1 REMARK REVDAT 2 14-SEP-16 5JBX 1 JRNL REVDAT 1 22-JUN-16 5JBX 0 JRNL AUTH T.BOCK,J.REICHELT,R.MULLER,W.BLANKENFELDT JRNL TITL THE STRUCTURE OF LIUC, A 3-HYDROXY-3-METHYLGLUTACONYL COA JRNL TITL 2 DEHYDRATASE INVOLVED IN ISOVALERYL-COA BIOSYNTHESIS IN JRNL TITL 3 MYXOCOCCUS XANTHUS, REVEALS INSIGHTS INTO SPECIFICITY AND JRNL TITL 4 CATALYSIS. JRNL REF CHEMBIOCHEM V. 17 1658 2016 JRNL REFN ESSN 1439-7633 JRNL PMID 27271456 JRNL DOI 10.1002/CBIC.201600225 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 326352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.145 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 16101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4180 - 3.4174 1.00 10986 586 0.1315 0.1524 REMARK 3 2 3.4174 - 2.7126 1.00 10671 566 0.1316 0.1500 REMARK 3 3 2.7126 - 2.3698 1.00 10568 576 0.1241 0.1480 REMARK 3 4 2.3698 - 2.1531 1.00 10527 534 0.1170 0.1285 REMARK 3 5 2.1531 - 1.9988 1.00 10503 558 0.1151 0.1303 REMARK 3 6 1.9988 - 1.8809 1.00 10448 528 0.1221 0.1303 REMARK 3 7 1.8809 - 1.7867 1.00 10487 534 0.1131 0.1234 REMARK 3 8 1.7867 - 1.7090 1.00 10447 533 0.1108 0.1333 REMARK 3 9 1.7090 - 1.6432 1.00 10427 514 0.1054 0.1308 REMARK 3 10 1.6432 - 1.5865 1.00 10358 563 0.1028 0.1259 REMARK 3 11 1.5865 - 1.5368 1.00 10372 575 0.1002 0.1263 REMARK 3 12 1.5368 - 1.4929 0.99 10385 519 0.1010 0.1206 REMARK 3 13 1.4929 - 1.4536 0.99 10332 537 0.1049 0.1275 REMARK 3 14 1.4536 - 1.4181 0.99 10320 539 0.1105 0.1345 REMARK 3 15 1.4181 - 1.3859 0.99 10333 532 0.1112 0.1465 REMARK 3 16 1.3859 - 1.3564 0.99 10319 537 0.1136 0.1429 REMARK 3 17 1.3564 - 1.3293 0.99 10264 516 0.1161 0.1394 REMARK 3 18 1.3293 - 1.3042 0.99 10238 541 0.1257 0.1650 REMARK 3 19 1.3042 - 1.2809 0.99 10313 513 0.1315 0.1546 REMARK 3 20 1.2809 - 1.2592 0.99 10240 524 0.1315 0.1568 REMARK 3 21 1.2592 - 1.2389 0.99 10197 552 0.1362 0.1589 REMARK 3 22 1.2389 - 1.2198 0.98 10223 531 0.1496 0.1662 REMARK 3 23 1.2198 - 1.2019 0.98 10216 516 0.1544 0.1751 REMARK 3 24 1.2019 - 1.1849 0.98 10239 518 0.1510 0.1793 REMARK 3 25 1.1849 - 1.1689 0.98 10125 523 0.1553 0.1679 REMARK 3 26 1.1689 - 1.1537 0.98 10147 531 0.1617 0.1837 REMARK 3 27 1.1537 - 1.1393 0.98 10229 498 0.1702 0.1945 REMARK 3 28 1.1393 - 1.1256 0.98 10127 530 0.1835 0.2066 REMARK 3 29 1.1256 - 1.1125 0.98 10071 552 0.1942 0.1915 REMARK 3 30 1.1125 - 1.1000 0.98 10139 525 0.2109 0.2227 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6322 REMARK 3 ANGLE : 1.097 8631 REMARK 3 CHIRALITY : 0.075 999 REMARK 3 PLANARITY : 0.007 1145 REMARK 3 DIHEDRAL : 22.874 2486 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7994 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 326543 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 42.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 1.28800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5JBW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% TACSIMATE PH 6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.41700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.31700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.38650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.31700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.41700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.38650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 134 CE NZ REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 ARG B 45 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 85 CZ NH1 NH2 REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 LYS B 256 CE NZ REMARK 470 ARG C 45 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 58 CE NZ REMARK 470 LYS C 67 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG C 78 O HOH C 306 1.44 REMARK 500 HH12 ARG C 240 O HOH C 307 1.47 REMARK 500 OE1 GLU C 36 O HOH C 301 1.90 REMARK 500 O HOH B 469 O HOH B 605 1.93 REMARK 500 O HOH A 463 O HOH A 682 1.99 REMARK 500 OD1 ASP B 82 O HOH B 402 2.00 REMARK 500 O HOH A 522 O HOH A 707 2.06 REMARK 500 OD1 ASP A 82 O HOH A 401 2.06 REMARK 500 O HOH B 493 O HOH B 742 2.07 REMARK 500 O HOH A 441 O HOH A 686 2.08 REMARK 500 O HOH B 465 O HOH B 689 2.08 REMARK 500 O HOH A 439 O HOH A 674 2.12 REMARK 500 O HOH B 546 O HOH B 689 2.13 REMARK 500 OE1 GLU C 199 O HOH C 302 2.15 REMARK 500 O HOH B 437 O HOH B 644 2.15 REMARK 500 O HOH C 684 O HOH C 691 2.15 REMARK 500 O HOH A 646 O HOH A 705 2.16 REMARK 500 O PRO C 139 O HOH C 303 2.16 REMARK 500 O HOH C 335 O HOH C 655 2.17 REMARK 500 NH1 ARG A 229 O HOH A 402 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 82 O HOH C 306 3545 1.85 REMARK 500 O HOH A 709 O HOH C 472 4555 1.98 REMARK 500 O HOH A 435 O HOH B 652 4455 1.99 REMARK 500 O HOH A 430 O HOH C 357 2454 2.13 REMARK 500 OG SER A 173 O HOH B 416 4455 2.17 REMARK 500 O HOH A 627 O HOH C 319 3545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 176 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 66.81 -106.65 REMARK 500 ASP B 18 70.52 -105.40 REMARK 500 CYS B 61 118.92 -169.85 REMARK 500 ASP C 18 64.02 -100.71 REMARK 500 CYS C 61 119.75 -170.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 735 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 761 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH C 730 DISTANCE = 5.86 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI B 304 DBREF 5JBX A 1 258 UNP Q1D5Y4 Q1D5Y4_MYXXD 1 258 DBREF 5JBX B 1 258 UNP Q1D5Y4 Q1D5Y4_MYXXD 1 258 DBREF 5JBX C 1 258 UNP Q1D5Y4 Q1D5Y4_MYXXD 1 258 SEQADV 5JBX GLY A -2 UNP Q1D5Y4 EXPRESSION TAG SEQADV 5JBX PRO A -1 UNP Q1D5Y4 EXPRESSION TAG SEQADV 5JBX HIS A 0 UNP Q1D5Y4 EXPRESSION TAG SEQADV 5JBX GLY B -2 UNP Q1D5Y4 EXPRESSION TAG SEQADV 5JBX PRO B -1 UNP Q1D5Y4 EXPRESSION TAG SEQADV 5JBX HIS B 0 UNP Q1D5Y4 EXPRESSION TAG SEQADV 5JBX GLY C -2 UNP Q1D5Y4 EXPRESSION TAG SEQADV 5JBX PRO C -1 UNP Q1D5Y4 EXPRESSION TAG SEQADV 5JBX HIS C 0 UNP Q1D5Y4 EXPRESSION TAG SEQRES 1 A 261 GLY PRO HIS MET PRO GLU PHE LYS VAL ASP ALA ARG GLY SEQRES 2 A 261 PRO ILE GLU ILE TRP THR ILE ASP GLY GLU SER ARG ARG SEQRES 3 A 261 ASN ALA ILE SER ARG ALA MET LEU LYS GLU LEU GLY GLU SEQRES 4 A 261 LEU VAL THR ARG VAL SER SER SER ARG ASP VAL ARG ALA SEQRES 5 A 261 VAL VAL ILE THR GLY ALA GLY ASP LYS ALA PHE CYS ALA SEQRES 6 A 261 GLY ALA ASP LEU LYS GLU ARG ALA THR MET ALA GLU ASP SEQRES 7 A 261 GLU VAL ARG ALA PHE LEU ASP GLY LEU ARG ARG THR PHE SEQRES 8 A 261 ARG ALA ILE GLU LYS SER ASP CYS VAL PHE ILE ALA ALA SEQRES 9 A 261 ILE ASN GLY ALA ALA LEU GLY GLY GLY THR GLU LEU ALA SEQRES 10 A 261 LEU ALA CYS ASP LEU ARG VAL ALA ALA PRO ALA ALA GLU SEQRES 11 A 261 LEU GLY LEU THR GLU VAL LYS LEU GLY ILE ILE PRO GLY SEQRES 12 A 261 GLY GLY GLY THR GLN ARG LEU ALA ARG LEU VAL GLY PRO SEQRES 13 A 261 GLY ARG ALA LYS ASP LEU ILE LEU THR ALA ARG ARG ILE SEQRES 14 A 261 ASN ALA ALA GLU ALA PHE SER VAL GLY LEU ALA ASN ARG SEQRES 15 A 261 LEU ALA PRO GLU GLY HIS LEU LEU ALA VAL ALA TYR GLY SEQRES 16 A 261 LEU ALA GLU SER VAL VAL GLU ASN ALA PRO ILE ALA VAL SEQRES 17 A 261 ALA THR ALA LYS HIS ALA ILE ASP GLU GLY THR GLY LEU SEQRES 18 A 261 GLU LEU ASP ASP ALA LEU ALA LEU GLU LEU ARG LYS TYR SEQRES 19 A 261 GLU GLU ILE LEU LYS THR GLU ASP ARG LEU GLU GLY LEU SEQRES 20 A 261 ARG ALA PHE ALA GLU LYS ARG ALA PRO VAL TYR LYS GLY SEQRES 21 A 261 ARG SEQRES 1 B 261 GLY PRO HIS MET PRO GLU PHE LYS VAL ASP ALA ARG GLY SEQRES 2 B 261 PRO ILE GLU ILE TRP THR ILE ASP GLY GLU SER ARG ARG SEQRES 3 B 261 ASN ALA ILE SER ARG ALA MET LEU LYS GLU LEU GLY GLU SEQRES 4 B 261 LEU VAL THR ARG VAL SER SER SER ARG ASP VAL ARG ALA SEQRES 5 B 261 VAL VAL ILE THR GLY ALA GLY ASP LYS ALA PHE CYS ALA SEQRES 6 B 261 GLY ALA ASP LEU LYS GLU ARG ALA THR MET ALA GLU ASP SEQRES 7 B 261 GLU VAL ARG ALA PHE LEU ASP GLY LEU ARG ARG THR PHE SEQRES 8 B 261 ARG ALA ILE GLU LYS SER ASP CYS VAL PHE ILE ALA ALA SEQRES 9 B 261 ILE ASN GLY ALA ALA LEU GLY GLY GLY THR GLU LEU ALA SEQRES 10 B 261 LEU ALA CYS ASP LEU ARG VAL ALA ALA PRO ALA ALA GLU SEQRES 11 B 261 LEU GLY LEU THR GLU VAL LYS LEU GLY ILE ILE PRO GLY SEQRES 12 B 261 GLY GLY GLY THR GLN ARG LEU ALA ARG LEU VAL GLY PRO SEQRES 13 B 261 GLY ARG ALA LYS ASP LEU ILE LEU THR ALA ARG ARG ILE SEQRES 14 B 261 ASN ALA ALA GLU ALA PHE SER VAL GLY LEU ALA ASN ARG SEQRES 15 B 261 LEU ALA PRO GLU GLY HIS LEU LEU ALA VAL ALA TYR GLY SEQRES 16 B 261 LEU ALA GLU SER VAL VAL GLU ASN ALA PRO ILE ALA VAL SEQRES 17 B 261 ALA THR ALA LYS HIS ALA ILE ASP GLU GLY THR GLY LEU SEQRES 18 B 261 GLU LEU ASP ASP ALA LEU ALA LEU GLU LEU ARG LYS TYR SEQRES 19 B 261 GLU GLU ILE LEU LYS THR GLU ASP ARG LEU GLU GLY LEU SEQRES 20 B 261 ARG ALA PHE ALA GLU LYS ARG ALA PRO VAL TYR LYS GLY SEQRES 21 B 261 ARG SEQRES 1 C 261 GLY PRO HIS MET PRO GLU PHE LYS VAL ASP ALA ARG GLY SEQRES 2 C 261 PRO ILE GLU ILE TRP THR ILE ASP GLY GLU SER ARG ARG SEQRES 3 C 261 ASN ALA ILE SER ARG ALA MET LEU LYS GLU LEU GLY GLU SEQRES 4 C 261 LEU VAL THR ARG VAL SER SER SER ARG ASP VAL ARG ALA SEQRES 5 C 261 VAL VAL ILE THR GLY ALA GLY ASP LYS ALA PHE CYS ALA SEQRES 6 C 261 GLY ALA ASP LEU LYS GLU ARG ALA THR MET ALA GLU ASP SEQRES 7 C 261 GLU VAL ARG ALA PHE LEU ASP GLY LEU ARG ARG THR PHE SEQRES 8 C 261 ARG ALA ILE GLU LYS SER ASP CYS VAL PHE ILE ALA ALA SEQRES 9 C 261 ILE ASN GLY ALA ALA LEU GLY GLY GLY THR GLU LEU ALA SEQRES 10 C 261 LEU ALA CYS ASP LEU ARG VAL ALA ALA PRO ALA ALA GLU SEQRES 11 C 261 LEU GLY LEU THR GLU VAL LYS LEU GLY ILE ILE PRO GLY SEQRES 12 C 261 GLY GLY GLY THR GLN ARG LEU ALA ARG LEU VAL GLY PRO SEQRES 13 C 261 GLY ARG ALA LYS ASP LEU ILE LEU THR ALA ARG ARG ILE SEQRES 14 C 261 ASN ALA ALA GLU ALA PHE SER VAL GLY LEU ALA ASN ARG SEQRES 15 C 261 LEU ALA PRO GLU GLY HIS LEU LEU ALA VAL ALA TYR GLY SEQRES 16 C 261 LEU ALA GLU SER VAL VAL GLU ASN ALA PRO ILE ALA VAL SEQRES 17 C 261 ALA THR ALA LYS HIS ALA ILE ASP GLU GLY THR GLY LEU SEQRES 18 C 261 GLU LEU ASP ASP ALA LEU ALA LEU GLU LEU ARG LYS TYR SEQRES 19 C 261 GLU GLU ILE LEU LYS THR GLU ASP ARG LEU GLU GLY LEU SEQRES 20 C 261 ARG ALA PHE ALA GLU LYS ARG ALA PRO VAL TYR LYS GLY SEQRES 21 C 261 ARG HET COA A 301 80 HET MLI A 302 9 HET COA B 301 80 HET MLI B 302 18 HET MLI B 303 9 HET MLI B 304 9 HETNAM COA COENZYME A HETNAM MLI MALONATE ION FORMUL 4 COA 2(C21 H36 N7 O16 P3 S) FORMUL 5 MLI 4(C3 H2 O4 2-) FORMUL 10 HOH *1126(H2 O) HELIX 1 AA1 GLY A 19 ARG A 23 5 5 HELIX 2 AA2 SER A 27 SER A 43 1 17 HELIX 3 AA3 ASP A 65 THR A 71 1 7 HELIX 4 AA4 ALA A 73 SER A 94 1 22 HELIX 5 AA5 GLY A 108 CYS A 117 1 10 HELIX 6 AA6 THR A 131 GLY A 136 5 6 HELIX 7 AA7 GLY A 142 GLY A 152 1 11 HELIX 8 AA8 GLY A 152 ALA A 163 1 12 HELIX 9 AA9 ASN A 167 VAL A 174 1 8 HELIX 10 AB1 HIS A 185 GLU A 199 1 15 HELIX 11 AB2 ALA A 201 GLY A 215 1 15 HELIX 12 AB3 GLU A 219 LYS A 236 1 18 HELIX 13 AB4 THR A 237 GLU A 249 1 13 HELIX 14 AB5 GLY B 19 ARG B 23 5 5 HELIX 15 AB6 SER B 27 SER B 44 1 18 HELIX 16 AB7 ASP B 65 ALA B 70 1 6 HELIX 17 AB8 ALA B 73 SER B 94 1 22 HELIX 18 AB9 GLY B 108 CYS B 117 1 10 HELIX 19 AC1 THR B 131 GLY B 136 5 6 HELIX 20 AC2 GLY B 142 ALA B 163 1 22 HELIX 21 AC3 ALA B 168 VAL B 174 1 7 HELIX 22 AC4 HIS B 185 GLU B 199 1 15 HELIX 23 AC5 ALA B 201 GLY B 215 1 15 HELIX 24 AC6 GLU B 219 LYS B 236 1 18 HELIX 25 AC7 THR B 237 GLU B 249 1 13 HELIX 26 AC8 GLY C 19 ARG C 23 5 5 HELIX 27 AC9 SER C 27 SER C 44 1 18 HELIX 28 AD1 ASP C 65 MET C 72 1 8 HELIX 29 AD2 ALA C 73 SER C 94 1 22 HELIX 30 AD3 GLY C 108 CYS C 117 1 10 HELIX 31 AD4 THR C 131 GLY C 136 5 6 HELIX 32 AD5 GLY C 142 GLY C 152 1 11 HELIX 33 AD6 GLY C 152 ALA C 163 1 12 HELIX 34 AD7 ALA C 168 VAL C 174 1 7 HELIX 35 AD8 HIS C 185 GLU C 199 1 15 HELIX 36 AD9 ALA C 201 THR C 216 1 16 HELIX 37 AE1 GLU C 219 LYS C 236 1 18 HELIX 38 AE2 THR C 237 GLU C 249 1 13 SHEET 1 AA1 6 PHE A 4 ALA A 8 0 SHEET 2 AA1 6 ILE A 12 ILE A 17 -1 O ILE A 14 N ASP A 7 SHEET 3 AA1 6 ALA A 49 GLY A 54 1 O VAL A 51 N TRP A 15 SHEET 4 AA1 6 VAL A 97 ILE A 102 1 O ALA A 101 N ILE A 52 SHEET 5 AA1 6 LEU A 119 ALA A 122 1 O VAL A 121 N ILE A 102 SHEET 6 AA1 6 ARG A 179 LEU A 180 1 O ARG A 179 N ALA A 122 SHEET 1 AA2 3 ALA A 59 CYS A 61 0 SHEET 2 AA2 3 ALA A 105 LEU A 107 1 O LEU A 107 N CYS A 61 SHEET 3 AA2 3 LEU A 128 GLY A 129 1 O GLY A 129 N ALA A 106 SHEET 1 AA3 6 GLU B 3 ARG B 9 0 SHEET 2 AA3 6 ILE B 12 ASP B 18 -1 O ILE B 12 N ARG B 9 SHEET 3 AA3 6 ALA B 49 GLY B 54 1 O VAL B 51 N TRP B 15 SHEET 4 AA3 6 VAL B 97 ILE B 102 1 O ALA B 101 N ILE B 52 SHEET 5 AA3 6 LEU B 119 ALA B 122 1 O VAL B 121 N ILE B 102 SHEET 6 AA3 6 ARG B 179 LEU B 180 1 O ARG B 179 N ALA B 122 SHEET 1 AA4 4 ALA B 59 CYS B 61 0 SHEET 2 AA4 4 ALA B 105 LEU B 107 1 O LEU B 107 N CYS B 61 SHEET 3 AA4 4 GLU B 127 GLY B 129 1 O GLU B 127 N ALA B 106 SHEET 4 AA4 4 ILE B 166 ASN B 167 -1 O ILE B 166 N LEU B 128 SHEET 1 AA5 6 PHE C 4 ARG C 9 0 SHEET 2 AA5 6 ILE C 12 ILE C 17 -1 O ILE C 14 N ASP C 7 SHEET 3 AA5 6 ALA C 49 GLY C 54 1 O VAL C 51 N TRP C 15 SHEET 4 AA5 6 VAL C 97 ILE C 102 1 O ALA C 101 N ILE C 52 SHEET 5 AA5 6 LEU C 119 ALA C 122 1 O VAL C 121 N ILE C 102 SHEET 6 AA5 6 ARG C 179 LEU C 180 1 O ARG C 179 N ALA C 122 SHEET 1 AA6 4 ALA C 59 CYS C 61 0 SHEET 2 AA6 4 ALA C 105 LEU C 107 1 O ALA C 105 N PHE C 60 SHEET 3 AA6 4 GLU C 127 GLY C 129 1 O GLU C 127 N ALA C 106 SHEET 4 AA6 4 ILE C 166 ASN C 167 -1 O ILE C 166 N LEU C 128 SITE 1 AC1 18 SER A 21 ARG A 22 ARG A 23 LYS A 58 SITE 2 AC1 18 ALA A 62 ALA A 64 ASP A 65 LEU A 66 SITE 3 AC1 18 LEU A 107 THR A 131 GLU A 132 LEU A 135 SITE 4 AC1 18 HOH A 421 HOH A 542 HOH A 588 HOH A 603 SITE 5 AC1 18 PHE C 247 LYS C 250 SITE 1 AC2 11 ALA A 64 ARG A 69 GLU A 112 GLU A 132 SITE 2 AC2 11 ILE A 137 PRO A 139 GLY A 140 GLY A 141 SITE 3 AC2 11 HOH A 476 HOH A 519 TYR C 231 SITE 1 AC3 29 PHE A 247 LYS A 250 SER B 21 ARG B 22 SITE 2 AC3 29 ARG B 23 ALA B 25 ALA B 62 ALA B 64 SITE 3 AC3 29 ASP B 65 LEU B 66 LYS B 67 LEU B 107 SITE 4 AC3 29 GLY B 108 THR B 131 GLU B 132 LEU B 135 SITE 5 AC3 29 ARG B 165 HOH B 423 HOH B 432 HOH B 438 SITE 6 AC3 29 HOH B 445 HOH B 466 HOH B 531 HOH B 551 SITE 7 AC3 29 HOH B 554 HOH B 568 HOH B 571 HOH B 579 SITE 8 AC3 29 HOH B 588 SITE 1 AC4 12 TYR A 231 ALA B 64 ARG B 69 LEU B 81 SITE 2 AC4 12 LEU B 84 GLU B 112 GLU B 132 ILE B 137 SITE 3 AC4 12 GLY B 140 GLY B 141 HOH B 401 HOH B 566 SITE 1 AC5 9 ARG B 28 LYS B 32 GLU B 76 SER B 173 SITE 2 AC5 9 HOH B 403 HOH B 480 HOH B 515 SER C 173 SITE 3 AC5 9 HOH C 580 SITE 1 AC6 7 GLY B -2 HOH B 449 HOH B 618 ARG C 179 SITE 2 AC6 7 GLY C 192 HOH C 364 HOH C 420 CRYST1 74.834 84.773 128.634 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013363 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007774 0.00000