HEADER HYDROLASE 14-APR-16 5JC6 TITLE CARBOXYPEPTIDASE B WITH 2-ND ZINC AND ACETATE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXYPEPTIDASE B; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.17.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: CPB1, CPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.I.TIMOFEEV,V.K.AKPAROV,I.P.KURANOVA REVDAT 4 23-OCT-24 5JC6 1 REMARK REVDAT 3 10-JAN-24 5JC6 1 LINK REVDAT 2 24-OCT-18 5JC6 1 JRNL REVDAT 1 24-MAY-17 5JC6 0 JRNL AUTH V.AKPAROV,V.TIMOFEEV,I.KHALIULLIN,V.SVEDAS,I.KURANOVA JRNL TITL STRUCTURE OF THE CARBOXYPEPTIDASE B COMPLEX WITH JRNL TITL 2 N-SULFAMOYL-L-PHENYLALANINE - A TRANSITION STATE ANALOG OF JRNL TITL 3 NON-SPECIFIC SUBSTRATE. JRNL REF J. BIOMOL. STRUCT. DYN. V. 36 956 2018 JRNL REFN ESSN 1538-0254 JRNL PMID 28274181 JRNL DOI 10.1080/07391102.2017.1304242 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 60668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3242 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4026 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 240 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2436 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 254 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.067 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.915 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2510 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3416 ; 1.100 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 5.538 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;32.144 ;24.068 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 395 ;11.028 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;10.857 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 362 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1938 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2510 ; 2.984 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 69 ;14.087 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2630 ; 8.488 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63991 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 27.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.04 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.8386 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.03 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4Z65 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, NA-CACODYLATE, ZNAC2, LIQUID REMARK 280 DIFFUSION, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.25500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.79000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.79000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.12750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.79000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.79000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.38250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.79000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.79000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.12750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.79000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.79000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.38250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.25500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -148.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 700 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 735 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 737 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 750 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS A 307 O HOH A 503 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 122 -44.43 -131.35 REMARK 500 THR A 129 -176.58 -68.55 REMARK 500 SER A 199 -0.65 141.89 REMARK 500 GLN A 200 68.91 60.90 REMARK 500 ASN A 215 36.49 -98.83 REMARK 500 ASP A 273 -144.85 -108.11 REMARK 500 ILE A 280 48.52 -97.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 752 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 753 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 754 DISTANCE = 6.68 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 19 OE1 REMARK 620 2 GLU A 19 OE2 51.9 REMARK 620 3 HOH A 630 O 104.4 97.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 ND1 REMARK 620 2 GLU A 72 OE1 88.9 REMARK 620 3 GLU A 72 OE2 116.8 58.0 REMARK 620 4 HIS A 196 ND1 100.1 155.7 98.0 REMARK 620 5 HOH A 549 O 127.7 85.4 103.5 105.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 85 OE2 REMARK 620 2 ASP A 159 OD2 47.7 REMARK 620 3 ASP A 162 OD1 49.2 1.4 REMARK 620 4 GLU A 291 OE1 88.9 49.7 48.7 REMARK 620 5 GLU A 291 OE2 92.0 50.9 49.7 59.0 REMARK 620 6 HOH A 526 O 91.6 113.7 114.1 152.2 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 270 OE2 REMARK 620 2 ACT A 406 O 114.4 REMARK 620 3 HOH A 549 O 118.8 95.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 406 DBREF 5JC6 A 6 308 UNP P09955 CBPB1_PIG 113 416 SEQRES 1 A 304 GLY HIS SER TYR GLU LYS TYR ASN ASN TRP GLU THR ILE SEQRES 2 A 304 GLU ALA TRP THR LYS GLN VAL THR SER GLU ASN PRO ASP SEQRES 3 A 304 LEU ILE SER ARG THR ALA ILE GLY THR THR PHE LEU GLY SEQRES 4 A 304 ASN ASN ILE TYR LEU LEU LYS VAL GLY LYS PRO GLY PRO SEQRES 5 A 304 ASN LYS PRO ALA ILE PHE MET ASP CYS GLY PHE HIS ALA SEQRES 6 A 304 ARG GLU TRP ILE SER HIS ALA PHE CYS GLN TRP PHE VAL SEQRES 7 A 304 ARG GLU ALA VAL LEU THR TYR GLY TYR GLU SER HIS MET SEQRES 8 A 304 THR GLU PHE LEU ASN LYS LEU ASP PHE TYR VAL LEU PRO SEQRES 9 A 304 VAL LEU ASN ILE ASP GLY TYR ILE TYR THR TRP THR LYS SEQRES 10 A 304 ASN ARG MET TRP ARG LYS THR ARG SER THR ASN ALA GLY SEQRES 11 A 304 THR THR CYS ILE GLY THR ASP PRO ASN ARG ASN PHE ASP SEQRES 12 A 304 ALA GLY TRP CYS THR THR GLY ALA SER THR ASP PRO CYS SEQRES 13 A 304 ASP GLU THR TYR CYS GLY SER ALA ALA GLU SER GLU LYS SEQRES 14 A 304 GLU THR LYS ALA LEU ALA ASP PHE ILE ARG ASN ASN LEU SEQRES 15 A 304 SER SER ILE LYS ALA TYR LEU THR ILE HIS SER TYR SER SEQRES 16 A 304 GLN MET ILE LEU TYR PRO TYR SER TYR ASP TYR LYS LEU SEQRES 17 A 304 PRO GLU ASN ASN ALA GLU LEU ASN ASN LEU ALA LYS ALA SEQRES 18 A 304 ALA VAL LYS GLU LEU ALA THR LEU TYR GLY THR LYS TYR SEQRES 19 A 304 THR TYR GLY PRO GLY ALA THR THR ILE TYR PRO ALA ALA SEQRES 20 A 304 GLY GLY SER ASP ASP TRP ALA TYR ASP GLN GLY ILE LYS SEQRES 21 A 304 TYR SER PHE THR PHE GLU LEU ARG ASP LYS GLY ARG TYR SEQRES 22 A 304 GLY PHE ILE LEU PRO GLU SER GLN ILE GLN ALA THR CYS SEQRES 23 A 304 GLU GLU THR MET LEU ALA ILE LYS TYR VAL THR ASN TYR SEQRES 24 A 304 VAL LEU GLY HIS LEU HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET ACT A 406 4 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 2 ZN 5(ZN 2+) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 HOH *254(H2 O) HELIX 1 AA1 ASN A 14 ASN A 29 1 16 HELIX 2 AA2 GLU A 72 TYR A 90 1 19 HELIX 3 AA3 GLU A 93 LEU A 103 1 11 HELIX 4 AA4 ASN A 112 LYS A 122 1 11 HELIX 5 AA5 ASP A 142 ASN A 146 5 5 HELIX 6 AA6 GLU A 173 ASN A 186 1 14 HELIX 7 AA7 ASN A 215 THR A 232 1 18 HELIX 8 AA8 GLY A 243 ILE A 247 1 5 HELIX 9 AA9 GLY A 253 GLN A 261 1 9 HELIX 10 AB1 PRO A 282 SER A 284 5 3 HELIX 11 AB2 GLN A 285 HIS A 307 1 23 SHEET 1 AA1 8 ILE A 33 THR A 40 0 SHEET 2 AA1 8 ASN A 46 VAL A 52 -1 O LYS A 51 N SER A 34 SHEET 3 AA1 8 ASP A 104 LEU A 108 -1 O PHE A 105 N VAL A 52 SHEET 4 AA1 8 ALA A 61 CYS A 66 1 N MET A 64 O TYR A 106 SHEET 5 AA1 8 ILE A 189 HIS A 196 1 O LYS A 190 N ALA A 61 SHEET 6 AA1 8 TYR A 265 GLU A 270 1 O PHE A 269 N HIS A 196 SHEET 7 AA1 8 MET A 201 TYR A 204 -1 N LEU A 203 O THR A 268 SHEET 8 AA1 8 THR A 239 PRO A 242 1 O THR A 239 N ILE A 202 SSBOND 1 CYS A 66 CYS A 79 1555 1555 2.01 SSBOND 2 CYS A 138 CYS A 161 1555 1555 2.05 SSBOND 3 CYS A 152 CYS A 166 1555 1555 2.05 LINK ND1 HIS A 7 ZN ZN A 405 1555 1555 2.27 LINK OE1 GLU A 19 ZN ZN A 404 1555 1555 2.33 LINK OE2 GLU A 19 ZN ZN A 404 1555 1555 2.64 LINK ND1 HIS A 69 ZN ZN A 401 1555 1555 2.05 LINK OE1 GLU A 72 ZN ZN A 401 1555 1555 2.29 LINK OE2 GLU A 72 ZN ZN A 401 1555 1555 2.17 LINK OE2 GLU A 85 ZN ZN A 403 1555 1555 2.06 LINK OD2 ASP A 159 ZN ZN A 403 1555 3545 2.01 LINK OD1 ASP A 162 ZN ZN A 403 1555 3545 2.11 LINK ND1 HIS A 196 ZN ZN A 401 1555 1555 2.08 LINK OE2 GLU A 270 ZN ZN A 402 1555 1555 1.91 LINK OE1 GLU A 291 ZN ZN A 403 1555 1555 2.09 LINK OE2 GLU A 291 ZN ZN A 403 1555 1555 2.31 LINK ZN ZN A 401 O HOH A 549 1555 1555 1.94 LINK ZN ZN A 402 O ACT A 406 1555 1555 1.96 LINK ZN ZN A 402 O HOH A 549 1555 1555 1.73 LINK ZN ZN A 403 O HOH A 526 1555 1555 2.06 LINK ZN ZN A 404 O HOH A 630 1555 1555 2.10 CISPEP 1 SER A 197 TYR A 198 0 -4.24 CISPEP 2 PRO A 205 TYR A 206 0 1.85 CISPEP 3 ARG A 272 ASP A 273 0 -3.28 SITE 1 AC1 6 HIS A 69 GLU A 72 HIS A 196 ZN A 402 SITE 2 AC1 6 ACT A 406 HOH A 549 SITE 1 AC2 4 GLU A 270 ZN A 401 ACT A 406 HOH A 549 SITE 1 AC3 5 GLU A 85 ASP A 159 ASP A 162 GLU A 291 SITE 2 AC3 5 HOH A 526 SITE 1 AC4 3 GLU A 19 HOH A 628 HOH A 630 SITE 1 AC5 1 HIS A 7 SITE 1 AC6 8 HIS A 69 ASN A 144 ARG A 145 GLU A 270 SITE 2 AC6 8 ZN A 401 ZN A 402 HOH A 513 HOH A 549 CRYST1 79.580 79.580 100.510 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009949 0.00000