HEADER SIGNALING PROTEIN,HYDROLASE 15-APR-16 5JCP TITLE RHOGAP DOMAIN OF ARAP3 IN COMPLEX WITH RHOA IN THE TRANSITION STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARF-GAP WITH RHO-GAP DOMAIN, ANK REPEAT AND PH DOMAIN- COMPND 3 CONTAINING PROTEIN 3,LINKER,TRANSFORMING PROTEIN RHOA; COMPND 4 CHAIN: B, A; COMPND 5 FRAGMENT: UNP RESIDUES 906-1107,UNP RESIDUES 2-181; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 32630; SOURCE 5 GENE: ARAP3, RHOA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG KEYWDS RHOA, RHOGAP, ARAP3, SIGNALING PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.BAO,F.LI,C.WANG,N.WANG,Y.JIANG,Y.TANG,J.WU,Y.SHI REVDAT 3 08-NOV-23 5JCP 1 JRNL REMARK LINK REVDAT 2 17-AUG-16 5JCP 1 JRNL REVDAT 1 22-JUN-16 5JCP 0 JRNL AUTH H.BAO,F.LI,C.WANG,N.WANG,Y.JIANG,Y.TANG,J.WU,Y.SHI JRNL TITL STRUCTURAL BASIS FOR THE SPECIFIC RECOGNITION OF RHOA BY THE JRNL TITL 2 DUAL GTPASE-ACTIVATING PROTEIN ARAP3 JRNL REF J.BIOL.CHEM. V. 291 16709 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27311713 JRNL DOI 10.1074/JBC.M116.736140 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 51671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 2644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7221 - 5.6006 0.99 2752 161 0.1807 0.1831 REMARK 3 2 5.6006 - 4.4465 1.00 2654 131 0.1505 0.2113 REMARK 3 3 4.4465 - 3.8847 1.00 2643 125 0.1554 0.1930 REMARK 3 4 3.8847 - 3.5297 1.00 2588 154 0.1775 0.1958 REMARK 3 5 3.5297 - 3.2768 1.00 2604 151 0.1978 0.2516 REMARK 3 6 3.2768 - 3.0836 1.00 2591 137 0.2012 0.2272 REMARK 3 7 3.0836 - 2.9292 1.00 2563 142 0.2185 0.2476 REMARK 3 8 2.9292 - 2.8017 1.00 2595 122 0.2157 0.2385 REMARK 3 9 2.8017 - 2.6939 1.00 2532 156 0.2064 0.2651 REMARK 3 10 2.6939 - 2.6009 1.00 2553 143 0.2007 0.2531 REMARK 3 11 2.6009 - 2.5196 1.00 2589 129 0.1954 0.2744 REMARK 3 12 2.5196 - 2.4476 1.00 2557 133 0.1916 0.2594 REMARK 3 13 2.4476 - 2.3832 1.00 2535 146 0.1871 0.2338 REMARK 3 14 2.3832 - 2.3250 1.00 2562 138 0.1888 0.2452 REMARK 3 15 2.3250 - 2.2722 1.00 2507 147 0.1968 0.2640 REMARK 3 16 2.2722 - 2.2238 1.00 2572 147 0.2037 0.2746 REMARK 3 17 2.2238 - 2.1793 1.00 2542 118 0.2015 0.2416 REMARK 3 18 2.1793 - 2.1382 1.00 2555 143 0.2113 0.2903 REMARK 3 19 2.1382 - 2.1000 1.00 2533 121 0.2259 0.2814 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5739 REMARK 3 ANGLE : 0.910 7776 REMARK 3 CHIRALITY : 0.055 884 REMARK 3 PLANARITY : 0.006 1007 REMARK 3 DIHEDRAL : 17.816 3504 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 10.8690 -3.4692 18.0172 REMARK 3 T TENSOR REMARK 3 T11: 0.1729 T22: 0.1891 REMARK 3 T33: 0.2426 T12: -0.0270 REMARK 3 T13: -0.0030 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 0.3580 L22: 0.8498 REMARK 3 L33: 0.6714 L12: -0.0342 REMARK 3 L13: 0.0387 L23: -0.1459 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: -0.0027 S13: -0.0240 REMARK 3 S21: -0.1694 S22: 0.0095 S23: 0.0563 REMARK 3 S31: -0.0326 S32: 0.0601 S33: -0.0416 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JCP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220357. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52079 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: 5JD0, 1A2B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 15%(V/V) PEG 550 MME, REMARK 280 4%(V/V) ACETONE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.39300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.14150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.60400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.14150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.39300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.60400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 897 REMARK 465 GLY B 898 REMARK 465 HIS B 899 REMARK 465 HIS B 900 REMARK 465 HIS B 901 REMARK 465 HIS B 902 REMARK 465 HIS B 903 REMARK 465 HIS B 904 REMARK 465 MET B 905 REMARK 465 GLU B 1101 REMARK 465 VAL B 1102 REMARK 465 SER B 1103 REMARK 465 LEU B 1104 REMARK 465 ILE B 1105 REMARK 465 THR B 1106 REMARK 465 THR B 1107 REMARK 465 ASN B 1108 REMARK 465 LEU B 1109 REMARK 465 SER B 1110 REMARK 465 SER B 1111 REMARK 465 ASP B 1112 REMARK 465 SER B 1113 REMARK 465 SER B 1114 REMARK 465 LEU B 1115 REMARK 465 SER B 1116 REMARK 465 SER B 1117 REMARK 465 PRO B 1118 REMARK 465 SER B 1119 REMARK 465 ALA B 1120 REMARK 465 LEU B 1121 REMARK 465 ASN B 1122 REMARK 465 SER B 1123 REMARK 465 THR B 1124 REMARK 465 ALA B 1125 REMARK 465 SER B 1126 REMARK 465 ASN B 1127 REMARK 465 SER B 1128 REMARK 465 PRO B 1129 REMARK 465 GLY B 1130 REMARK 465 ILE B 1131 REMARK 465 GLU B 1132 REMARK 465 GLY B 1133 REMARK 465 LEU B 1134 REMARK 465 SER B 1135 REMARK 465 ALA B 2 REMARK 465 LYS B 27 REMARK 465 ASP B 28 REMARK 465 GLN B 29 REMARK 465 PHE B 30 REMARK 465 PRO B 31 REMARK 465 GLU B 32 REMARK 465 VAL B 33 REMARK 465 TYR B 34 REMARK 465 VAL B 35 REMARK 465 PRO B 36 REMARK 465 THR B 37 REMARK 465 VAL B 38 REMARK 465 PHE B 39 REMARK 465 GLU B 40 REMARK 465 ALA B 181 REMARK 465 MET A 897 REMARK 465 GLY A 898 REMARK 465 HIS A 899 REMARK 465 HIS A 900 REMARK 465 HIS A 901 REMARK 465 HIS A 902 REMARK 465 HIS A 903 REMARK 465 HIS A 904 REMARK 465 MET A 905 REMARK 465 SER A 1103 REMARK 465 LEU A 1104 REMARK 465 ILE A 1105 REMARK 465 THR A 1106 REMARK 465 THR A 1107 REMARK 465 ASN A 1108 REMARK 465 LEU A 1109 REMARK 465 SER A 1110 REMARK 465 SER A 1111 REMARK 465 ASP A 1112 REMARK 465 SER A 1113 REMARK 465 SER A 1114 REMARK 465 LEU A 1115 REMARK 465 SER A 1116 REMARK 465 SER A 1117 REMARK 465 PRO A 1118 REMARK 465 SER A 1119 REMARK 465 ALA A 1120 REMARK 465 LEU A 1121 REMARK 465 ASN A 1122 REMARK 465 SER A 1123 REMARK 465 THR A 1124 REMARK 465 ALA A 1125 REMARK 465 SER A 1126 REMARK 465 ASN A 1127 REMARK 465 SER A 1128 REMARK 465 PRO A 1129 REMARK 465 GLY A 1130 REMARK 465 ILE A 1131 REMARK 465 GLU A 1132 REMARK 465 GLY A 1133 REMARK 465 LEU A 1134 REMARK 465 SER A 1135 REMARK 465 ALA A 2 REMARK 465 LYS A 27 REMARK 465 ASP A 28 REMARK 465 GLN A 29 REMARK 465 PHE A 30 REMARK 465 PRO A 31 REMARK 465 GLU A 32 REMARK 465 VAL A 33 REMARK 465 TYR A 34 REMARK 465 VAL A 35 REMARK 465 PRO A 36 REMARK 465 THR A 37 REMARK 465 VAL A 38 REMARK 465 PHE A 39 REMARK 465 GLU A 40 REMARK 465 ALA A 181 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY B 906 N REMARK 470 THR B 907 OG1 CG2 REMARK 470 ARG B 916 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 988 CG OD1 OD2 REMARK 470 GLU B1002 CG CD OE1 OE2 REMARK 470 GLN B1049 CG CD OE1 NE2 REMARK 470 ARG B1069 CG CD NE CZ NH1 NH2 REMARK 470 GLU B1071 CG CD OE1 OE2 REMARK 470 ASP B1093 CG OD1 OD2 REMARK 470 GLN B1097 CG CD OE1 NE2 REMARK 470 ASP B1099 CG OD1 OD2 REMARK 470 ARG B 5 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 GLN B 52 CG CD OE1 NE2 REMARK 470 ARG B 68 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 125 CG CD OE1 OE2 REMARK 470 ARG B 128 CG CD NE CZ NH1 NH2 REMARK 470 GLY A 906 N REMARK 470 ARG A 936 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 959 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1040 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1069 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1071 CG CD OE1 OE2 REMARK 470 GLN A1097 CG CD OE1 NE2 REMARK 470 GLU A1101 CG CD OE1 OE2 REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 GLN A 52 CG CD OE1 NE2 REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 ARG A 129 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG B 936 CZ REMARK 480 GLU B 938 CD REMARK 480 GLU B 956 CD REMARK 480 ARG B 959 CZ REMARK 480 ASN B 1010 CG REMARK 480 GLU B 1014 CD REMARK 480 ASP B 1067 CA REMARK 480 GLU B 130 CD REMARK 480 GLN A 910 CD REMARK 480 GLU A 911 CD REMARK 480 ARG A 916 NE REMARK 480 GLN A 932 CD REMARK 480 GLU A 956 CD REMARK 480 GLU A 1002 CD REMARK 480 GLY A 1068 C REMARK 480 ASP A 1093 CG REMARK 480 ASP A 1099 CG REMARK 480 LEU A 1100 CG REMARK 480 ARG A 168 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3B GDP A 1201 AL ALF A 1203 1.99 REMARK 500 O3B GDP B 1201 AL ALF B 1203 2.05 REMARK 500 AL ALF A 1203 O HOH A 1305 2.08 REMARK 500 AL ALF B 1203 O HOH B 1304 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 941 -12.81 75.18 REMARK 500 ASP B 960 87.57 -162.61 REMARK 500 SER B 993 118.85 79.33 REMARK 500 LYS B 98 -55.17 -122.74 REMARK 500 LYS B 164 -3.19 70.42 REMARK 500 TYR A 941 -12.21 75.44 REMARK 500 ASP A 960 86.90 -164.30 REMARK 500 SER A 993 117.96 78.33 REMARK 500 GLU A1101 40.49 -80.02 REMARK 500 LYS A 98 -54.92 -121.52 REMARK 500 LYS A 164 -1.95 72.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 19 OG1 REMARK 620 2 GDP B1201 O2B 92.3 REMARK 620 3 HOH B1312 O 89.4 77.8 REMARK 620 4 HOH B1320 O 81.3 91.1 165.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 19 OG1 REMARK 620 2 GDP A1201 O2B 96.3 REMARK 620 3 HOH A1307 O 82.4 93.8 REMARK 620 4 HOH A1323 O 92.2 84.1 174.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ALF B 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ALF A 1203 DBREF 5JCP B 906 1107 UNP Q8WWN8 ARAP3_HUMAN 906 1107 DBREF 5JCP B 1108 1135 PDB 5JCP 5JCP 1108 1135 DBREF 5JCP B 2 181 UNP P61586 RHOA_HUMAN 2 181 DBREF 5JCP A 906 1107 UNP Q8WWN8 ARAP3_HUMAN 906 1107 DBREF 5JCP A 1108 1135 PDB 5JCP 5JCP 1108 1135 DBREF 5JCP A 2 181 UNP P61586 RHOA_HUMAN 2 181 SEQADV 5JCP MET B 897 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP GLY B 898 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP HIS B 899 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP HIS B 900 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP HIS B 901 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP HIS B 902 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP HIS B 903 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP HIS B 904 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP MET B 905 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP ASN B 25 UNP P61586 PHE 25 ENGINEERED MUTATION SEQADV 5JCP MET A 897 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP GLY A 898 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP HIS A 899 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP HIS A 900 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP HIS A 901 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP HIS A 902 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP HIS A 903 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP HIS A 904 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP MET A 905 UNP Q8WWN8 EXPRESSION TAG SEQADV 5JCP ASN A 25 UNP P61586 PHE 25 ENGINEERED MUTATION SEQRES 1 B 419 MET GLY HIS HIS HIS HIS HIS HIS MET GLY THR GLY LEU SEQRES 2 B 419 GLN GLU GLN GLN MET SER ARG GLY ASP ILE PRO ILE ILE SEQRES 3 B 419 VAL ASP ALA CYS ILE SER PHE VAL THR GLN HIS GLY LEU SEQRES 4 B 419 ARG LEU GLU GLY VAL TYR ARG LYS GLY GLY ALA ARG ALA SEQRES 5 B 419 ARG SER LEU ARG LEU LEU ALA GLU PHE ARG ARG ASP ALA SEQRES 6 B 419 ARG SER VAL LYS LEU ARG PRO GLY GLU HIS PHE VAL GLU SEQRES 7 B 419 ASP VAL THR ASP THR LEU LYS ARG PHE PHE ARG GLU LEU SEQRES 8 B 419 ASP ASP PRO VAL THR SER ALA ARG LEU LEU PRO ARG TRP SEQRES 9 B 419 ARG GLU ALA ALA GLU LEU PRO GLN LYS ASN GLN ARG LEU SEQRES 10 B 419 GLU LYS TYR LYS ASP VAL ILE GLY CYS LEU PRO ARG VAL SEQRES 11 B 419 ASN ARG ARG THR LEU ALA THR LEU ILE GLY HIS LEU TYR SEQRES 12 B 419 ARG VAL GLN LYS CYS ALA ALA LEU ASN GLN MET CYS THR SEQRES 13 B 419 ARG ASN LEU ALA LEU LEU PHE ALA PRO SER VAL PHE GLN SEQRES 14 B 419 THR ASP GLY ARG GLY GLU HIS GLU VAL ARG VAL LEU GLN SEQRES 15 B 419 GLU LEU ILE ASP GLY TYR ILE SER VAL PHE ASP ILE ASP SEQRES 16 B 419 SER ASP GLN VAL ALA GLN ILE ASP LEU GLU VAL SER LEU SEQRES 17 B 419 ILE THR THR ASN LEU SER SER ASP SER SER LEU SER SER SEQRES 18 B 419 PRO SER ALA LEU ASN SER THR ALA SER ASN SER PRO GLY SEQRES 19 B 419 ILE GLU GLY LEU SER ALA ALA ILE ARG LYS LYS LEU VAL SEQRES 20 B 419 ILE VAL GLY ASP GLY ALA CYS GLY LYS THR CYS LEU LEU SEQRES 21 B 419 ILE VAL ASN SER LYS ASP GLN PHE PRO GLU VAL TYR VAL SEQRES 22 B 419 PRO THR VAL PHE GLU ASN TYR VAL ALA ASP ILE GLU VAL SEQRES 23 B 419 ASP GLY LYS GLN VAL GLU LEU ALA LEU TRP ASP THR ALA SEQRES 24 B 419 GLY GLN GLU ASP TYR ASP ARG LEU ARG PRO LEU SER TYR SEQRES 25 B 419 PRO ASP THR ASP VAL ILE LEU MET CYS PHE SER ILE ASP SEQRES 26 B 419 SER PRO ASP SER LEU GLU ASN ILE PRO GLU LYS TRP THR SEQRES 27 B 419 PRO GLU VAL LYS HIS PHE CYS PRO ASN VAL PRO ILE ILE SEQRES 28 B 419 LEU VAL GLY ASN LYS LYS ASP LEU ARG ASN ASP GLU HIS SEQRES 29 B 419 THR ARG ARG GLU LEU ALA LYS MET LYS GLN GLU PRO VAL SEQRES 30 B 419 LYS PRO GLU GLU GLY ARG ASP MET ALA ASN ARG ILE GLY SEQRES 31 B 419 ALA PHE GLY TYR MET GLU CYS SER ALA LYS THR LYS ASP SEQRES 32 B 419 GLY VAL ARG GLU VAL PHE GLU MET ALA THR ARG ALA ALA SEQRES 33 B 419 LEU GLN ALA SEQRES 1 A 419 MET GLY HIS HIS HIS HIS HIS HIS MET GLY THR GLY LEU SEQRES 2 A 419 GLN GLU GLN GLN MET SER ARG GLY ASP ILE PRO ILE ILE SEQRES 3 A 419 VAL ASP ALA CYS ILE SER PHE VAL THR GLN HIS GLY LEU SEQRES 4 A 419 ARG LEU GLU GLY VAL TYR ARG LYS GLY GLY ALA ARG ALA SEQRES 5 A 419 ARG SER LEU ARG LEU LEU ALA GLU PHE ARG ARG ASP ALA SEQRES 6 A 419 ARG SER VAL LYS LEU ARG PRO GLY GLU HIS PHE VAL GLU SEQRES 7 A 419 ASP VAL THR ASP THR LEU LYS ARG PHE PHE ARG GLU LEU SEQRES 8 A 419 ASP ASP PRO VAL THR SER ALA ARG LEU LEU PRO ARG TRP SEQRES 9 A 419 ARG GLU ALA ALA GLU LEU PRO GLN LYS ASN GLN ARG LEU SEQRES 10 A 419 GLU LYS TYR LYS ASP VAL ILE GLY CYS LEU PRO ARG VAL SEQRES 11 A 419 ASN ARG ARG THR LEU ALA THR LEU ILE GLY HIS LEU TYR SEQRES 12 A 419 ARG VAL GLN LYS CYS ALA ALA LEU ASN GLN MET CYS THR SEQRES 13 A 419 ARG ASN LEU ALA LEU LEU PHE ALA PRO SER VAL PHE GLN SEQRES 14 A 419 THR ASP GLY ARG GLY GLU HIS GLU VAL ARG VAL LEU GLN SEQRES 15 A 419 GLU LEU ILE ASP GLY TYR ILE SER VAL PHE ASP ILE ASP SEQRES 16 A 419 SER ASP GLN VAL ALA GLN ILE ASP LEU GLU VAL SER LEU SEQRES 17 A 419 ILE THR THR ASN LEU SER SER ASP SER SER LEU SER SER SEQRES 18 A 419 PRO SER ALA LEU ASN SER THR ALA SER ASN SER PRO GLY SEQRES 19 A 419 ILE GLU GLY LEU SER ALA ALA ILE ARG LYS LYS LEU VAL SEQRES 20 A 419 ILE VAL GLY ASP GLY ALA CYS GLY LYS THR CYS LEU LEU SEQRES 21 A 419 ILE VAL ASN SER LYS ASP GLN PHE PRO GLU VAL TYR VAL SEQRES 22 A 419 PRO THR VAL PHE GLU ASN TYR VAL ALA ASP ILE GLU VAL SEQRES 23 A 419 ASP GLY LYS GLN VAL GLU LEU ALA LEU TRP ASP THR ALA SEQRES 24 A 419 GLY GLN GLU ASP TYR ASP ARG LEU ARG PRO LEU SER TYR SEQRES 25 A 419 PRO ASP THR ASP VAL ILE LEU MET CYS PHE SER ILE ASP SEQRES 26 A 419 SER PRO ASP SER LEU GLU ASN ILE PRO GLU LYS TRP THR SEQRES 27 A 419 PRO GLU VAL LYS HIS PHE CYS PRO ASN VAL PRO ILE ILE SEQRES 28 A 419 LEU VAL GLY ASN LYS LYS ASP LEU ARG ASN ASP GLU HIS SEQRES 29 A 419 THR ARG ARG GLU LEU ALA LYS MET LYS GLN GLU PRO VAL SEQRES 30 A 419 LYS PRO GLU GLU GLY ARG ASP MET ALA ASN ARG ILE GLY SEQRES 31 A 419 ALA PHE GLY TYR MET GLU CYS SER ALA LYS THR LYS ASP SEQRES 32 A 419 GLY VAL ARG GLU VAL PHE GLU MET ALA THR ARG ALA ALA SEQRES 33 A 419 LEU GLN ALA HET GDP B1201 28 HET MG B1202 1 HET ALF B1203 5 HET GDP A1201 28 HET MG A1202 1 HET ALF A1203 5 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ALF TETRAFLUOROALUMINATE ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 ALF 2(AL F4 1-) FORMUL 9 HOH *192(H2 O) HELIX 1 AA1 GLY B 908 GLN B 912 5 5 HELIX 2 AA2 PRO B 920 GLY B 934 1 15 HELIX 3 AA3 ALA B 946 ALA B 961 1 16 HELIX 4 AA4 ARG B 962 VAL B 964 5 3 HELIX 5 AA5 PHE B 972 LEU B 987 1 16 HELIX 6 AA6 SER B 993 ARG B 995 5 3 HELIX 7 AA7 LEU B 996 GLU B 1005 1 10 HELIX 8 AA8 GLN B 1008 LEU B 1023 1 16 HELIX 9 AA9 PRO B 1024 CYS B 1044 1 21 HELIX 10 AB1 CYS B 1044 GLN B 1049 1 6 HELIX 11 AB2 CYS B 1051 GLN B 1065 1 15 HELIX 12 AB3 GLY B 1070 GLY B 1083 1 14 HELIX 13 AB4 GLY B 1083 PHE B 1088 1 6 HELIX 14 AB5 ASP B 1091 LEU B 1100 1 10 HELIX 15 AB6 GLY B 17 SER B 26 1 10 HELIX 16 AB7 GLN B 63 ASP B 67 5 5 HELIX 17 AB8 LEU B 69 TYR B 74 5 6 HELIX 18 AB9 SER B 88 LYS B 98 1 11 HELIX 19 AC1 LYS B 98 CYS B 107 1 10 HELIX 20 AC2 LYS B 118 ARG B 122 5 5 HELIX 21 AC3 ASP B 124 MET B 134 1 11 HELIX 22 AC4 LYS B 140 GLY B 152 1 13 HELIX 23 AC5 GLY B 166 GLN B 180 1 15 HELIX 24 AC6 GLY A 908 GLN A 912 5 5 HELIX 25 AC7 PRO A 920 GLY A 934 1 15 HELIX 26 AC8 ALA A 946 ALA A 961 1 16 HELIX 27 AC9 ARG A 962 VAL A 964 5 3 HELIX 28 AD1 PHE A 972 LEU A 987 1 16 HELIX 29 AD2 SER A 993 ARG A 995 5 3 HELIX 30 AD3 LEU A 996 GLU A 1005 1 10 HELIX 31 AD4 GLN A 1008 CYS A 1022 1 15 HELIX 32 AD5 PRO A 1024 CYS A 1044 1 21 HELIX 33 AD6 CYS A 1044 GLN A 1049 1 6 HELIX 34 AD7 CYS A 1051 GLN A 1065 1 15 HELIX 35 AD8 GLY A 1070 GLY A 1083 1 14 HELIX 36 AD9 GLY A 1083 PHE A 1088 1 6 HELIX 37 AE1 ASP A 1091 GLU A 1101 1 11 HELIX 38 AE2 GLY A 17 SER A 26 1 10 HELIX 39 AE3 GLN A 63 ASP A 67 5 5 HELIX 40 AE4 LEU A 69 TYR A 74 5 6 HELIX 41 AE5 SER A 88 LYS A 98 1 11 HELIX 42 AE6 LYS A 98 CYS A 107 1 10 HELIX 43 AE7 LYS A 118 ARG A 122 5 5 HELIX 44 AE8 ASP A 124 MET A 134 1 11 HELIX 45 AE9 LYS A 140 GLY A 152 1 13 HELIX 46 AF1 GLY A 166 GLN A 180 1 15 SHEET 1 AA1 6 TYR B 42 VAL B 48 0 SHEET 2 AA1 6 LYS B 51 TRP B 58 -1 O VAL B 53 N ILE B 46 SHEET 3 AA1 6 ILE B 4 GLY B 12 1 N LEU B 8 O ALA B 56 SHEET 4 AA1 6 VAL B 79 SER B 85 1 O CYS B 83 N VAL B 11 SHEET 5 AA1 6 ILE B 112 ASN B 117 1 O ILE B 113 N ILE B 80 SHEET 6 AA1 6 GLY B 155 GLU B 158 1 O MET B 157 N GLY B 116 SHEET 1 AA2 6 TYR A 42 VAL A 48 0 SHEET 2 AA2 6 LYS A 51 TRP A 58 -1 O VAL A 53 N ILE A 46 SHEET 3 AA2 6 ILE A 4 GLY A 12 1 N LEU A 8 O ALA A 56 SHEET 4 AA2 6 VAL A 79 SER A 85 1 O CYS A 83 N VAL A 11 SHEET 5 AA2 6 ILE A 112 ASN A 117 1 O ASN A 117 N PHE A 84 SHEET 6 AA2 6 GLY A 155 GLU A 158 1 O GLY A 155 N LEU A 114 LINK OG1 THR B 19 MG MG B1202 1555 1555 2.18 LINK O2B GDP B1201 MG MG B1202 1555 1555 2.02 LINK MG MG B1202 O HOH B1312 1555 1555 2.13 LINK MG MG B1202 O HOH B1320 1555 1555 2.15 LINK OG1 THR A 19 MG MG A1202 1555 1555 2.14 LINK O2B GDP A1201 MG MG A1202 1555 1555 1.97 LINK MG MG A1202 O HOH A1307 1555 1555 2.12 LINK MG MG A1202 O HOH A1323 1555 1555 1.99 SITE 1 AC1 18 ALA B 15 CYS B 16 GLY B 17 LYS B 18 SITE 2 AC1 18 THR B 19 CYS B 20 LYS B 118 ASP B 120 SITE 3 AC1 18 LEU B 121 SER B 160 ALA B 161 LYS B 162 SITE 4 AC1 18 ARG B 942 MG B1202 ALF B1203 HOH B1312 SITE 5 AC1 18 HOH B1320 HOH B1388 SITE 1 AC2 5 THR B 19 GDP B1201 ALF B1203 HOH B1312 SITE 2 AC2 5 HOH B1320 SITE 1 AC3 11 GLY B 14 ALA B 15 LYS B 18 GLY B 62 SITE 2 AC3 11 GLN B 63 ARG B 942 GDP B1201 MG B1202 SITE 3 AC3 11 HOH B1304 HOH B1312 HOH B1320 SITE 1 AC4 19 ALA A 15 CYS A 16 GLY A 17 LYS A 18 SITE 2 AC4 19 THR A 19 CYS A 20 LYS A 118 ASP A 120 SITE 3 AC4 19 LEU A 121 SER A 160 ALA A 161 LYS A 162 SITE 4 AC4 19 ARG A 942 MG A1202 ALF A1203 HOH A1307 SITE 5 AC4 19 HOH A1323 HOH A1353 HOH A1365 SITE 1 AC5 5 THR A 19 GDP A1201 ALF A1203 HOH A1307 SITE 2 AC5 5 HOH A1323 SITE 1 AC6 11 GLY A 14 ALA A 15 LYS A 18 GLY A 62 SITE 2 AC6 11 GLN A 63 ARG A 942 GDP A1201 MG A1202 SITE 3 AC6 11 HOH A1305 HOH A1307 HOH A1323 CRYST1 56.786 93.208 164.283 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017610 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006087 0.00000