HEADER OXIDOREDUCTASE 15-APR-16 5JCT TITLE CRYSTAL STRUCTURE OF HUMAN PIRIN IN COMPLEX WITH A CHEMICAL PROBE TITLE 2 PYRROLIDINE 24 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PIRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROBABLE QUERCETIN 2,3-DIOXYGENASE PIR,PROBABLE COMPND 5 QUERCETINASE; COMPND 6 EC: 1.13.11.24; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CUPIN, BETA-BARREL FOLD, INHIBITOR, COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ALI,R.VAN MONTFORT REVDAT 3 10-JAN-24 5JCT 1 REMARK REVDAT 2 25-JAN-17 5JCT 1 JRNL REVDAT 1 11-JAN-17 5JCT 0 JRNL AUTH M.D.CHEESEMAN,N.E.CHESSUM,C.S.RYE,A.E.PASQUA,M.J.TUCKER, JRNL AUTH 2 B.WILDING,L.E.EVANS,S.LEPRI,M.RICHARDS,S.Y.SHARP,S.ALI, JRNL AUTH 3 M.ROWLANDS,L.O'FEE,A.MIAH,A.HAYES,A.T.HENLEY,M.POWERS, JRNL AUTH 4 R.TE POELE,E.DE BILLY,L.PELLEGRINO,F.RAYNAUD,R.BURKE, JRNL AUTH 5 R.L.VAN MONTFORT,S.A.ECCLES,P.WORKMAN,K.JONES JRNL TITL DISCOVERY OF A CHEMICAL PROBE BISAMIDE (CCT251236): AN JRNL TITL 2 ORALLY BIOAVAILABLE EFFICACIOUS PIRIN LIGAND FROM A HEAT JRNL TITL 3 SHOCK TRANSCRIPTION FACTOR 1 (HSF1) PHENOTYPIC SCREEN. JRNL REF J. MED. CHEM. V. 60 180 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28004573 JRNL DOI 10.1021/ACS.JMEDCHEM.6B01055 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 32467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1631 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2793 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.58 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 134 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2197 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.68230 REMARK 3 B22 (A**2) : -1.90260 REMARK 3 B33 (A**2) : -0.77980 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.220 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.114 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.107 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.103 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.101 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2402 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3275 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 840 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 58 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 396 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2402 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 300 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 23 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3153 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.39 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|3 - 26} REMARK 3 ORIGIN FOR THE GROUP (A): 53.5114 69.9365 3.3654 REMARK 3 T TENSOR REMARK 3 T11: -0.0078 T22: 0.0399 REMARK 3 T33: -0.0926 T12: 0.0033 REMARK 3 T13: 0.0076 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 2.7382 L22: 2.9517 REMARK 3 L33: 3.5339 L12: 0.4085 REMARK 3 L13: 1.0397 L23: -1.1950 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: 0.5246 S13: -0.0283 REMARK 3 S21: -0.2817 S22: 0.0345 S23: 0.0337 REMARK 3 S31: 0.2465 S32: 0.3529 S33: -0.1140 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|27 - 119} REMARK 3 ORIGIN FOR THE GROUP (A): 58.9280 80.5068 13.0123 REMARK 3 T TENSOR REMARK 3 T11: -0.0470 T22: -0.0258 REMARK 3 T33: -0.0247 T12: -0.0102 REMARK 3 T13: -0.0161 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.4638 L22: 1.0170 REMARK 3 L33: 0.8805 L12: 0.0969 REMARK 3 L13: 0.4594 L23: 0.3087 REMARK 3 S TENSOR REMARK 3 S11: -0.1389 S12: 0.1239 S13: 0.0188 REMARK 3 S21: -0.0320 S22: 0.1206 S23: -0.1478 REMARK 3 S31: -0.0668 S32: 0.0725 S33: 0.0183 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|120 - 138} REMARK 3 ORIGIN FOR THE GROUP (A): 52.8654 83.8949 23.9815 REMARK 3 T TENSOR REMARK 3 T11: 0.0343 T22: 0.0223 REMARK 3 T33: -0.0237 T12: 0.0301 REMARK 3 T13: -0.0442 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.5778 L22: 1.7425 REMARK 3 L33: 1.2396 L12: -0.5797 REMARK 3 L13: 1.9165 L23: -0.7356 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: -0.1069 S13: 0.0013 REMARK 3 S21: 0.2008 S22: -0.0350 S23: -0.0661 REMARK 3 S31: -0.1003 S32: -0.1517 S33: 0.0670 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|139 - 168} REMARK 3 ORIGIN FOR THE GROUP (A): 54.2056 68.1382 26.7185 REMARK 3 T TENSOR REMARK 3 T11: 0.0321 T22: -0.0506 REMARK 3 T33: -0.0546 T12: 0.0196 REMARK 3 T13: -0.0112 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 0.8802 L22: 3.4392 REMARK 3 L33: 0.4675 L12: -0.9986 REMARK 3 L13: 1.1367 L23: -0.8688 REMARK 3 S TENSOR REMARK 3 S11: -0.0514 S12: -0.1460 S13: -0.2768 REMARK 3 S21: 0.3378 S22: 0.0845 S23: 0.0325 REMARK 3 S31: 0.1452 S32: -0.0891 S33: -0.0331 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|169 - 243} REMARK 3 ORIGIN FOR THE GROUP (A): 51.4592 59.2007 14.5860 REMARK 3 T TENSOR REMARK 3 T11: 0.0214 T22: -0.0961 REMARK 3 T33: -0.0101 T12: -0.0366 REMARK 3 T13: -0.0208 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.0271 L22: 3.0005 REMARK 3 L33: 2.4116 L12: -0.6808 REMARK 3 L13: -0.0057 L23: -0.0279 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: 0.1314 S13: -0.3602 REMARK 3 S21: -0.0905 S22: 0.0920 S23: 0.1326 REMARK 3 S31: 0.4517 S32: -0.1586 S33: -0.1276 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|244 - 272} REMARK 3 ORIGIN FOR THE GROUP (A): 42.2354 89.2974 10.8609 REMARK 3 T TENSOR REMARK 3 T11: -0.0895 T22: -0.0023 REMARK 3 T33: -0.0577 T12: 0.0130 REMARK 3 T13: -0.0313 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.9894 L22: 2.2304 REMARK 3 L33: 2.4189 L12: -0.5674 REMARK 3 L13: 1.3416 L23: -0.3039 REMARK 3 S TENSOR REMARK 3 S11: -0.2122 S12: 0.3142 S13: 0.3253 REMARK 3 S21: 0.0292 S22: 0.1390 S23: -0.0129 REMARK 3 S31: -0.3275 S32: -0.1277 S33: 0.0733 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|273 - 290} REMARK 3 ORIGIN FOR THE GROUP (A): 58.6703 98.4186 13.3595 REMARK 3 T TENSOR REMARK 3 T11: -0.0302 T22: -0.0986 REMARK 3 T33: 0.2146 T12: -0.0535 REMARK 3 T13: -0.1169 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.0171 L22: 1.1211 REMARK 3 L33: 1.0798 L12: -0.9380 REMARK 3 L13: -0.4662 L23: 0.0752 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: 0.0019 S13: 0.2212 REMARK 3 S21: -0.1533 S22: -0.0217 S23: -0.2108 REMARK 3 S31: -0.4323 S32: 0.0544 S33: 0.0769 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JCT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.965 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32524 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 42.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4EWA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES (PH7.5), 8% (V/V) EYTHYLENE REMARK 280 GLYCOL, 20% (W/V) PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.07400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.53100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.70750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.53100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.07400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.70750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CD CE NZ REMARK 470 ASN A 35 CG OD1 ND2 REMARK 470 LYS A 46 CE NZ REMARK 470 GLU A 128 CD OE1 OE2 REMARK 470 LYS A 144 CE NZ REMARK 470 LYS A 160 CE NZ REMARK 470 LYS A 162 CD CE NZ REMARK 470 LYS A 181 CE NZ REMARK 470 LYS A 188 CD CE NZ REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 ARG A 272 CD NE CZ NH1 NH2 REMARK 470 ARG A 280 CZ NH1 NH2 REMARK 470 LYS A 282 CE NZ REMARK 470 THR A 283 CB OG1 CG2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 287 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 27 -107.11 -97.79 REMARK 500 ASN A 35 54.40 -102.94 REMARK 500 ASP A 55 115.16 -30.34 REMARK 500 ALA A 208 52.41 -143.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 6JQ A 305 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 56 NE2 REMARK 620 2 HIS A 58 NE2 93.2 REMARK 620 3 HIS A 101 NE2 92.2 96.0 REMARK 620 4 GLU A 103 OE2 91.3 174.9 81.5 REMARK 620 5 HOH A 406 O 84.1 91.0 172.3 91.8 REMARK 620 6 HOH A 560 O 168.1 98.6 88.5 77.0 93.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6JQ A 305 DBREF 5JCT A 1 290 UNP O00625 PIR_HUMAN 1 290 SEQADV 5JCT MET A -19 UNP O00625 INITIATING METHIONINE SEQADV 5JCT GLY A -18 UNP O00625 EXPRESSION TAG SEQADV 5JCT SER A -17 UNP O00625 EXPRESSION TAG SEQADV 5JCT SER A -16 UNP O00625 EXPRESSION TAG SEQADV 5JCT HIS A -15 UNP O00625 EXPRESSION TAG SEQADV 5JCT HIS A -14 UNP O00625 EXPRESSION TAG SEQADV 5JCT HIS A -13 UNP O00625 EXPRESSION TAG SEQADV 5JCT HIS A -12 UNP O00625 EXPRESSION TAG SEQADV 5JCT HIS A -11 UNP O00625 EXPRESSION TAG SEQADV 5JCT HIS A -10 UNP O00625 EXPRESSION TAG SEQADV 5JCT SER A -9 UNP O00625 EXPRESSION TAG SEQADV 5JCT SER A -8 UNP O00625 EXPRESSION TAG SEQADV 5JCT GLY A -7 UNP O00625 EXPRESSION TAG SEQADV 5JCT LEU A -6 UNP O00625 EXPRESSION TAG SEQADV 5JCT VAL A -5 UNP O00625 EXPRESSION TAG SEQADV 5JCT PRO A -4 UNP O00625 EXPRESSION TAG SEQADV 5JCT ARG A -3 UNP O00625 EXPRESSION TAG SEQADV 5JCT GLY A -2 UNP O00625 EXPRESSION TAG SEQADV 5JCT SER A -1 UNP O00625 EXPRESSION TAG SEQADV 5JCT HIS A 0 UNP O00625 EXPRESSION TAG SEQRES 1 A 310 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 310 LEU VAL PRO ARG GLY SER HIS MET GLY SER SER LYS LYS SEQRES 3 A 310 VAL THR LEU SER VAL LEU SER ARG GLU GLN SER GLU GLY SEQRES 4 A 310 VAL GLY ALA ARG VAL ARG ARG SER ILE GLY ARG PRO GLU SEQRES 5 A 310 LEU LYS ASN LEU ASP PRO PHE LEU LEU PHE ASP GLU PHE SEQRES 6 A 310 LYS GLY GLY ARG PRO GLY GLY PHE PRO ASP HIS PRO HIS SEQRES 7 A 310 ARG GLY PHE GLU THR VAL SER TYR LEU LEU GLU GLY GLY SEQRES 8 A 310 SER MET ALA HIS GLU ASP PHE CYS GLY HIS THR GLY LYS SEQRES 9 A 310 MET ASN PRO GLY ASP LEU GLN TRP MET THR ALA GLY ARG SEQRES 10 A 310 GLY ILE LEU HIS ALA GLU MET PRO CYS SER GLU GLU PRO SEQRES 11 A 310 ALA HIS GLY LEU GLN LEU TRP VAL ASN LEU ARG SER SER SEQRES 12 A 310 GLU LYS MET VAL GLU PRO GLN TYR GLN GLU LEU LYS SER SEQRES 13 A 310 GLU GLU ILE PRO LYS PRO SER LYS ASP GLY VAL THR VAL SEQRES 14 A 310 ALA VAL ILE SER GLY GLU ALA LEU GLY ILE LYS SER LYS SEQRES 15 A 310 VAL TYR THR ARG THR PRO THR LEU TYR LEU ASP PHE LYS SEQRES 16 A 310 LEU ASP PRO GLY ALA LYS HIS SER GLN PRO ILE PRO LYS SEQRES 17 A 310 GLY TRP THR SER PHE ILE TYR THR ILE SER GLY ASP VAL SEQRES 18 A 310 TYR ILE GLY PRO ASP ASP ALA GLN GLN LYS ILE GLU PRO SEQRES 19 A 310 HIS HIS THR ALA VAL LEU GLY GLU GLY ASP SER VAL GLN SEQRES 20 A 310 VAL GLU ASN LYS ASP PRO LYS ARG SER HIS PHE VAL LEU SEQRES 21 A 310 ILE ALA GLY GLU PRO LEU ARG GLU PRO VAL ILE GLN HIS SEQRES 22 A 310 GLY PRO PHE VAL MET ASN THR ASN GLU GLU ILE SER GLN SEQRES 23 A 310 ALA ILE LEU ASP PHE ARG ASN ALA LYS ASN GLY PHE GLU SEQRES 24 A 310 ARG ALA LYS THR TRP LYS SER LYS ILE GLY ASN HET FE A 301 1 HET GOL A 302 6 HET DMS A 303 4 HET DMS A 304 4 HET 6JQ A 305 33 HETNAM FE FE (III) ION HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETNAM 6JQ N-{5-[(2,3-DIHYDRO-1,4-BENZODIOXINE-6-CARBONYL)AMINO]- HETNAM 2 6JQ 2-METHYLPHENYL}-2-[3-(PYRROLIDIN-1-YL) HETNAM 3 6JQ PROPYL]QUINOLINE-6-CARBOXAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FE FE 3+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 DMS 2(C2 H6 O S) FORMUL 6 6JQ C33 H34 N4 O4 FORMUL 7 HOH *324(H2 O) HELIX 1 AA1 ARG A 30 LYS A 34 5 5 HELIX 2 AA2 ARG A 121 LYS A 125 5 5 HELIX 3 AA3 LYS A 135 ILE A 139 5 5 HELIX 4 AA4 THR A 260 ASN A 273 1 14 HELIX 5 AA5 PHE A 278 LYS A 282 5 5 SHEET 1 AA1 7 VAL A 7 LEU A 12 0 SHEET 2 AA1 7 HIS A 216 LEU A 220 -1 O VAL A 219 N LEU A 9 SHEET 3 AA1 7 THR A 191 SER A 198 -1 N ILE A 194 O ALA A 218 SHEET 4 AA1 7 SER A 236 GLY A 243 -1 O ILE A 241 N PHE A 193 SHEET 5 AA1 7 THR A 169 LEU A 176 -1 N PHE A 174 O PHE A 238 SHEET 6 AA1 7 VAL A 147 SER A 153 -1 N ALA A 150 O ASP A 173 SHEET 7 AA1 7 SER A 143 LYS A 144 -1 N LYS A 144 O VAL A 147 SHEET 1 AA2 7 GLU A 15 GLU A 18 0 SHEET 2 AA2 7 ALA A 22 ARG A 26 -1 O VAL A 24 N GLN A 16 SHEET 3 AA2 7 PHE A 39 GLY A 47 -1 O GLU A 44 N ARG A 25 SHEET 4 AA2 7 ALA A 111 ASN A 119 -1 O TRP A 117 N LEU A 40 SHEET 5 AA2 7 PHE A 61 LEU A 67 -1 N GLU A 62 O VAL A 118 SHEET 6 AA2 7 LEU A 90 THR A 94 -1 O MET A 93 N THR A 63 SHEET 7 AA2 7 GLN A 130 LEU A 134 -1 O GLN A 132 N TRP A 92 SHEET 1 AA3 4 PHE A 53 HIS A 58 0 SHEET 2 AA3 4 ILE A 99 PRO A 105 -1 O GLU A 103 N PHE A 53 SHEET 3 AA3 4 MET A 73 ASP A 77 -1 N ALA A 74 O MET A 104 SHEET 4 AA3 4 THR A 82 MET A 85 -1 O MET A 85 N MET A 73 SHEET 1 AA4 2 GLU A 155 ALA A 156 0 SHEET 2 AA4 2 ILE A 159 LYS A 160 -1 O ILE A 159 N ALA A 156 SHEET 1 AA5 4 LYS A 181 PRO A 185 0 SHEET 2 AA5 4 SER A 225 GLU A 229 -1 O VAL A 226 N GLN A 184 SHEET 3 AA5 4 VAL A 201 ILE A 203 -1 N TYR A 202 O GLU A 229 SHEET 4 AA5 4 GLN A 210 ILE A 212 -1 O ILE A 212 N VAL A 201 SHEET 1 AA6 2 ILE A 251 HIS A 253 0 SHEET 2 AA6 2 PHE A 256 MET A 258 -1 O PHE A 256 N HIS A 253 LINK NE2 HIS A 56 FE FE A 301 1555 1555 2.11 LINK NE2 HIS A 58 FE FE A 301 1555 1555 2.12 LINK NE2 HIS A 101 FE FE A 301 1555 1555 2.17 LINK OE2 GLU A 103 FE FE A 301 1555 1555 2.51 LINK FE FE A 301 O HOH A 406 1555 1555 2.14 LINK FE FE A 301 O HOH A 560 1555 1555 2.35 CISPEP 1 ASP A 37 PRO A 38 0 13.06 CISPEP 2 ARG A 49 PRO A 50 0 1.69 CISPEP 3 ARG A 49 PRO A 50 0 -0.05 SITE 1 AC1 6 HIS A 56 HIS A 58 HIS A 101 GLU A 103 SITE 2 AC1 6 HOH A 406 HOH A 560 SITE 1 AC2 8 GLY A 154 GLU A 155 GLN A 184 TRP A 190 SITE 2 AC2 8 HOH A 436 HOH A 481 HOH A 497 HOH A 584 SITE 1 AC3 4 GLU A 137 GLU A 138 ILE A 139 PRO A 140 SITE 1 AC4 2 TYR A 164 HOH A 492 SITE 1 AC5 15 GLU A 18 ARG A 26 LEU A 41 ASP A 43 SITE 2 AC5 15 PHE A 45 PHE A 53 PRO A 54 HIS A 56 SITE 3 AC5 15 MET A 73 GLU A 103 GLY A 113 LEU A 114 SITE 4 AC5 15 GLN A 115 TRP A 117 HOH A 406 CRYST1 42.148 67.415 107.062 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014833 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009340 0.00000