HEADER PROTEIN BINDING 15-APR-16 5JD7 TITLE PKG I'S CARBOXYL TERMINAL CYCLIC NUCLEOTIDE BINDING DOMAIN (CNB-B) IN TITLE 2 A COMPLEX WITH PET-CGMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-DEPENDENT PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 219-260; COMPND 5 SYNONYM: CGK1,CGMP-DEPENDENT PROTEIN KINASE I,CGKI; COMPND 6 EC: 2.7.11.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKG1, PRKG1B, PRKGR1A, PRKGR1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BINDING SITES, CYCLIC AMP, CYCLIC GMP, CYCLIC GMP-DEPENDENT PROTEIN KEYWDS 2 KINASE TYPE II, MUTAGENESIS, SITE-DIRECTED, PROTEIN BINDING, ANALOGS EXPDTA X-RAY DIFFRACTION AUTHOR J.C.CAMPBELL,B.SANKARAN,C.W.KIM REVDAT 4 27-SEP-23 5JD7 1 REMARK REVDAT 3 27-SEP-17 5JD7 1 JRNL REVDAT 2 23-AUG-17 5JD7 1 JRNL REVDAT 1 09-AUG-17 5JD7 0 JRNL AUTH J.C.CAMPBELL,P.HENNING,E.FRANZ,B.SANKARAN,F.W.HERBERG,C.KIM JRNL TITL STRUCTURAL BASIS OF ANALOG SPECIFICITY IN PKG I AND II. JRNL REF ACS CHEM. BIOL. V. 12 2388 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 28793191 JRNL DOI 10.1021/ACSCHEMBIO.7B00369 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 11850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1969 - 3.4974 0.99 1457 161 0.1701 0.1992 REMARK 3 2 3.4974 - 2.7761 1.00 1356 151 0.1876 0.2062 REMARK 3 3 2.7761 - 2.4253 1.00 1326 148 0.1925 0.2516 REMARK 3 4 2.4253 - 2.2035 1.00 1315 146 0.1982 0.1887 REMARK 3 5 2.2035 - 2.0456 1.00 1321 147 0.2128 0.2773 REMARK 3 6 2.0456 - 1.9250 1.00 1296 144 0.2337 0.3242 REMARK 3 7 1.9250 - 1.8286 1.00 1307 145 0.2584 0.2866 REMARK 3 8 1.8286 - 1.7490 0.99 1287 143 0.2710 0.2988 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1047 REMARK 3 ANGLE : 1.096 1428 REMARK 3 CHIRALITY : 0.062 162 REMARK 3 PLANARITY : 0.007 180 REMARK 3 DIHEDRAL : 13.308 604 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5018 3.2080 23.2044 REMARK 3 T TENSOR REMARK 3 T11: 0.5495 T22: 0.2375 REMARK 3 T33: 0.2771 T12: 0.0150 REMARK 3 T13: -0.0995 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.1047 L22: 6.0996 REMARK 3 L33: 4.7479 L12: 2.3813 REMARK 3 L13: -2.2410 L23: -2.8736 REMARK 3 S TENSOR REMARK 3 S11: -0.0812 S12: -0.5180 S13: 0.0990 REMARK 3 S21: 1.3387 S22: -0.2288 S23: -0.3892 REMARK 3 S31: -0.2403 S32: 0.4385 S33: 0.4455 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6789 -4.2422 16.9732 REMARK 3 T TENSOR REMARK 3 T11: 0.3628 T22: 0.2291 REMARK 3 T33: 0.2578 T12: -0.0074 REMARK 3 T13: -0.0328 T23: 0.0787 REMARK 3 L TENSOR REMARK 3 L11: 2.0526 L22: 3.4342 REMARK 3 L33: 4.1928 L12: -3.5742 REMARK 3 L13: -4.3981 L23: 1.7786 REMARK 3 S TENSOR REMARK 3 S11: 0.3146 S12: -0.5877 S13: -0.6222 REMARK 3 S21: 0.4783 S22: -0.1618 S23: 0.3863 REMARK 3 S31: 0.6852 S32: -0.1116 S33: -0.0864 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7833 7.6445 16.8573 REMARK 3 T TENSOR REMARK 3 T11: 0.4628 T22: 0.1468 REMARK 3 T33: 0.2698 T12: -0.0018 REMARK 3 T13: -0.1181 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.4796 L22: 4.6447 REMARK 3 L33: 0.2195 L12: -2.0121 REMARK 3 L13: -0.2339 L23: 0.2093 REMARK 3 S TENSOR REMARK 3 S11: -0.1768 S12: -0.0740 S13: 0.5670 REMARK 3 S21: 0.4903 S22: -0.0234 S23: -0.7397 REMARK 3 S31: -0.5659 S32: 0.1154 S33: 0.0658 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7420 14.6394 14.1873 REMARK 3 T TENSOR REMARK 3 T11: 0.3240 T22: 0.2026 REMARK 3 T33: 0.2349 T12: 0.0413 REMARK 3 T13: 0.0350 T23: -0.0310 REMARK 3 L TENSOR REMARK 3 L11: 2.3315 L22: 1.5635 REMARK 3 L33: 3.1204 L12: -0.5136 REMARK 3 L13: 0.8809 L23: -0.6269 REMARK 3 S TENSOR REMARK 3 S11: -0.1623 S12: -0.3246 S13: 0.2016 REMARK 3 S21: 0.3987 S22: 0.0646 S23: 0.1104 REMARK 3 S31: -0.5071 S32: -0.4029 S33: 0.0881 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 279 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3612 10.5136 15.7434 REMARK 3 T TENSOR REMARK 3 T11: 0.3129 T22: 0.5863 REMARK 3 T33: 0.3596 T12: 0.0686 REMARK 3 T13: 0.1933 T23: 0.0857 REMARK 3 L TENSOR REMARK 3 L11: 4.8499 L22: 3.1066 REMARK 3 L33: 5.2381 L12: 0.1168 REMARK 3 L13: 2.3556 L23: -1.4074 REMARK 3 S TENSOR REMARK 3 S11: -0.6339 S12: -0.6727 S13: -0.4611 REMARK 3 S21: 0.5827 S22: 0.6141 S23: 0.9322 REMARK 3 S31: -0.6244 S32: -1.0926 S33: -0.0638 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 300 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1038 6.4162 10.5297 REMARK 3 T TENSOR REMARK 3 T11: 0.2069 T22: 0.1509 REMARK 3 T33: 0.2063 T12: -0.0419 REMARK 3 T13: 0.0317 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 2.3589 L22: 3.2001 REMARK 3 L33: 2.4612 L12: -1.4292 REMARK 3 L13: 0.7564 L23: -0.3511 REMARK 3 S TENSOR REMARK 3 S11: -0.0856 S12: -0.1047 S13: -0.2483 REMARK 3 S21: 0.2773 S22: 0.0313 S23: 0.2568 REMARK 3 S31: 0.1091 S32: -0.1728 S33: 0.0423 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11850 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.749 REMARK 200 RESOLUTION RANGE LOW (A) : 42.185 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 200 MM CAAC, 0.1M NAAC PH REMARK 280 4.5-4.8., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.23000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.14500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.14500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.61500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.14500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.14500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.84500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.14500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.14500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.61500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.14500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.14500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.84500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.23000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 510 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 576 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 217 REMARK 465 SER A 218 REMARK 465 THR A 219 REMARK 465 GLY A 220 REMARK 465 LEU A 221 REMARK 465 SER A 288 REMARK 465 PRO A 289 REMARK 465 SER A 290 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 222 N CB CG1 CG2 CD1 REMARK 470 LYS A 223 CD CE NZ REMARK 470 GLU A 226 CD OE1 OE2 REMARK 470 GLU A 229 CD OE1 OE2 REMARK 470 ASN A 259 CG OD1 ND2 REMARK 470 LYS A 278 CE NZ REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 ASP A 287 CG OD1 OD2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 VAL A 294 CG1 CG2 REMARK 470 LYS A 301 NZ REMARK 470 LYS A 308 NZ REMARK 470 ASP A 344 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 503 O HOH A 555 1.89 REMARK 500 OD1 ASP A 334 O HOH A 501 1.90 REMARK 500 O HOH A 505 O HOH A 508 1.96 REMARK 500 O HOH A 560 O HOH A 564 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 503 O HOH A 511 5545 1.89 REMARK 500 O HOH A 525 O HOH A 571 4454 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 269 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 271 16.78 -140.75 REMARK 500 GLU A 324 -170.77 170.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6JR A 401 DBREF 5JD7 A 219 351 UNP Q13976 KGP1_HUMAN 220 352 SEQADV 5JD7 GLY A 217 UNP Q13976 EXPRESSION TAG SEQADV 5JD7 SER A 218 UNP Q13976 EXPRESSION TAG SEQRES 1 A 135 GLY SER THR GLY LEU ILE LYS HIS THR GLU TYR MET GLU SEQRES 2 A 135 PHE LEU LYS SER VAL PRO THR PHE GLN SER LEU PRO GLU SEQRES 3 A 135 GLU ILE LEU SER LYS LEU ALA ASP VAL LEU GLU GLU THR SEQRES 4 A 135 HIS TYR GLU ASN GLY GLU TYR ILE ILE ARG GLN GLY ALA SEQRES 5 A 135 ARG GLY ASP THR PHE PHE ILE ILE SER LYS GLY THR VAL SEQRES 6 A 135 ASN VAL THR ARG GLU ASP SER PRO SER GLU ASP PRO VAL SEQRES 7 A 135 PHE LEU ARG THR LEU GLY LYS GLY ASP TRP PHE GLY GLU SEQRES 8 A 135 LYS ALA LEU GLN GLY GLU ASP VAL ARG THR ALA ASN VAL SEQRES 9 A 135 ILE ALA ALA GLU ALA VAL THR CYS LEU VAL ILE ASP ARG SEQRES 10 A 135 ASP SER PHE LYS HIS LEU ILE GLY GLY LEU ASP ASP VAL SEQRES 11 A 135 SER ASN LYS ALA TYR HET 6JR A 401 46 HETNAM 6JR 3-[(2S,4AR,6R,7R,7AS)-2,7-DIHYDROXY-2-OXOTETRAHYDRO-2H, HETNAM 2 6JR 4H-2LAMBDA~5~-FURO[3,2-D][1,3,2]DIOXAPHOSPHININ-6-YL]- HETNAM 3 6JR 6-PHENYL-3,4-DIHYDRO-9H-IMIDAZO[1,2-A]PURIN-9-ONE HETSYN 6JR PET-CGMP FORMUL 2 6JR C18 H16 N5 O7 P FORMUL 3 HOH *80(H2 O) HELIX 1 AA1 ILE A 222 SER A 233 1 12 HELIX 2 AA2 PRO A 241 LEU A 252 1 12 HELIX 3 AA3 GLU A 307 GLN A 311 5 5 HELIX 4 AA4 ARG A 333 ILE A 340 1 8 HELIX 5 AA5 LEU A 343 ASN A 348 1 6 SHEET 1 AA1 4 GLU A 253 TYR A 257 0 SHEET 2 AA1 4 VAL A 326 ASP A 332 -1 O VAL A 330 N GLU A 253 SHEET 3 AA1 4 THR A 272 LYS A 278 -1 N ILE A 275 O LEU A 329 SHEET 4 AA1 4 TRP A 304 PHE A 305 -1 O PHE A 305 N PHE A 274 SHEET 1 AA2 4 TYR A 262 ILE A 264 0 SHEET 2 AA2 4 ASN A 319 ALA A 322 -1 O VAL A 320 N ILE A 263 SHEET 3 AA2 4 THR A 280 ARG A 285 -1 N ASN A 282 O ILE A 321 SHEET 4 AA2 4 VAL A 294 GLY A 300 -1 O ARG A 297 N VAL A 283 SITE 1 AC1 15 ILE A 264 VAL A 283 ARG A 285 LEU A 296 SITE 2 AC1 15 ARG A 297 PHE A 305 GLY A 306 GLU A 307 SITE 3 AC1 15 LYS A 308 ALA A 309 ARG A 316 THR A 317 SITE 4 AC1 15 ALA A 318 VAL A 320 TYR A 351 CRYST1 46.290 46.290 102.460 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009760 0.00000