HEADER HYDROLASE 17-APR-16 5JDU TITLE CRYSTAL STRUCTURE FOR HUMAN THROMBIN MUTANT D189A COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: COAGULATION FACTOR II; COMPND 5 EC: 3.4.21.5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: THROMBIN HEAVY CHAIN; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: COAGULATION FACTOR II; COMPND 11 EC: 3.4.21.5; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F2; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: F2; SOURCE 14 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS SERINE PROTEASE, COAGULATION, CONFORMATIONAL EQUILIBRIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.POZZI,Z.CHEN,E.DI CERA REVDAT 6 27-SEP-23 5JDU 1 HETSYN LINK REVDAT 5 29-JUL-20 5JDU 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 04-DEC-19 5JDU 1 REMARK REVDAT 3 27-SEP-17 5JDU 1 JRNL REMARK REVDAT 2 10-AUG-16 5JDU 1 JRNL REVDAT 1 13-JUL-16 5JDU 0 JRNL AUTH N.POZZI,M.ZERBETTO,L.ACQUASALIENTE,S.TESCARI,D.FREZZATO, JRNL AUTH 2 A.POLIMENO,D.W.GOHARA,E.DI CERA,V.DE FILIPPIS JRNL TITL LOOP ELECTROSTATICS ASYMMETRY MODULATES THE PREEXISTING JRNL TITL 2 CONFORMATIONAL EQUILIBRIUM IN THROMBIN. JRNL REF BIOCHEMISTRY V. 55 3984 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27347732 JRNL DOI 10.1021/ACS.BIOCHEM.6B00385 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.O.PINEDA,C.J.CARRELL,L.A.BUSH,S.PRASAD,S.CACCIA,Z.W.CHEN, REMARK 1 AUTH 2 F.S.MATHEWS,E.DI CERA REMARK 1 TITL MOLECULAR DISSECTION OF NA+ BINDING TO THROMBIN REMARK 1 REF JBC V. 279 31842 2004 REMARK 1 REFN ISSN 0021-9258JJ REMARK 1 PMID 15152000 REMARK 1 DOI 10.1074/JBC.M401756200 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 70070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3729 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4654 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 255 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 622 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.087 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4658 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6291 ; 1.377 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 547 ; 6.284 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;30.254 ;23.028 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 826 ;14.030 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;14.205 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 661 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3516 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2742 ; 0.626 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4420 ; 1.182 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1916 ; 1.986 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1869 ; 3.188 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9310 16.0646 37.3995 REMARK 3 T TENSOR REMARK 3 T11: 0.1273 T22: 0.1223 REMARK 3 T33: 0.2112 T12: -0.0174 REMARK 3 T13: -0.0262 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 9.0468 L22: 5.8521 REMARK 3 L33: 5.7054 L12: -0.1600 REMARK 3 L13: -0.0276 L23: 1.5850 REMARK 3 S TENSOR REMARK 3 S11: -0.1282 S12: -0.7402 S13: -0.0640 REMARK 3 S21: 0.5835 S22: -0.0587 S23: -0.2009 REMARK 3 S31: -0.0772 S32: 0.5247 S33: 0.1870 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3927 22.4467 23.9664 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.1457 REMARK 3 T33: 0.1837 T12: -0.0772 REMARK 3 T13: 0.0277 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 10.3533 L22: 5.8842 REMARK 3 L33: 3.8703 L12: -4.8751 REMARK 3 L13: 3.0824 L23: -2.5516 REMARK 3 S TENSOR REMARK 3 S11: -0.1047 S12: 0.4343 S13: 0.5203 REMARK 3 S21: -0.2810 S22: -0.1067 S23: -0.6369 REMARK 3 S31: -0.2663 S32: 0.4625 S33: 0.2113 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 29 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8914 9.1578 23.8943 REMARK 3 T TENSOR REMARK 3 T11: 0.2272 T22: 0.1775 REMARK 3 T33: 0.1975 T12: -0.0031 REMARK 3 T13: 0.0760 T23: -0.0638 REMARK 3 L TENSOR REMARK 3 L11: 2.8151 L22: 0.2315 REMARK 3 L33: 7.6972 L12: 0.6030 REMARK 3 L13: 1.2023 L23: 0.0212 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: 0.6906 S13: -0.2687 REMARK 3 S21: -0.1439 S22: 0.1421 S23: -0.1203 REMARK 3 S31: -0.0856 S32: 0.5350 S33: -0.1377 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1532 -0.6877 35.6271 REMARK 3 T TENSOR REMARK 3 T11: 0.0564 T22: 0.0251 REMARK 3 T33: 0.1261 T12: 0.0184 REMARK 3 T13: -0.0139 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 3.0429 L22: 7.9188 REMARK 3 L33: 3.3827 L12: 1.4067 REMARK 3 L13: 0.3748 L23: 0.4553 REMARK 3 S TENSOR REMARK 3 S11: -0.0356 S12: 0.1197 S13: -0.3085 REMARK 3 S21: -0.4427 S22: 0.0558 S23: -0.0004 REMARK 3 S31: 0.1783 S32: 0.0316 S33: -0.0202 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0882 -0.5222 37.6868 REMARK 3 T TENSOR REMARK 3 T11: 0.1153 T22: 0.0490 REMARK 3 T33: 0.0859 T12: -0.0101 REMARK 3 T13: -0.0046 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 4.6901 L22: 0.9587 REMARK 3 L33: 1.4343 L12: 0.7189 REMARK 3 L13: 1.4157 L23: 0.3687 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: -0.1973 S13: -0.2944 REMARK 3 S21: -0.0107 S22: -0.0161 S23: -0.0305 REMARK 3 S31: 0.1666 S32: -0.2335 S33: 0.0328 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5094 -0.5416 37.2661 REMARK 3 T TENSOR REMARK 3 T11: 0.1420 T22: 0.0996 REMARK 3 T33: 0.1679 T12: -0.0224 REMARK 3 T13: -0.0400 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 4.2768 L22: 3.3583 REMARK 3 L33: 2.1093 L12: -1.9200 REMARK 3 L13: -1.3793 L23: 0.0916 REMARK 3 S TENSOR REMARK 3 S11: -0.0923 S12: 0.1652 S13: -0.3213 REMARK 3 S21: -0.1917 S22: -0.1058 S23: -0.2473 REMARK 3 S31: 0.2542 S32: 0.0580 S33: 0.1981 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 93 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7018 7.7870 39.2051 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.0492 REMARK 3 T33: 0.0367 T12: 0.0063 REMARK 3 T13: -0.0220 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 4.9224 L22: 2.4104 REMARK 3 L33: 2.7515 L12: 0.0609 REMARK 3 L13: -0.1130 L23: -0.5460 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: -0.2886 S13: -0.1472 REMARK 3 S21: -0.0160 S22: -0.0463 S23: 0.0277 REMARK 3 S31: 0.0605 S32: -0.2419 S33: 0.0153 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 122 B 159 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5969 17.8812 28.1978 REMARK 3 T TENSOR REMARK 3 T11: 0.0571 T22: 0.0585 REMARK 3 T33: 0.1163 T12: -0.0303 REMARK 3 T13: -0.0045 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.3501 L22: 3.0042 REMARK 3 L33: 3.6341 L12: -0.9425 REMARK 3 L13: -0.2560 L23: 0.5321 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: 0.0496 S13: -0.0246 REMARK 3 S21: -0.1478 S22: 0.0271 S23: 0.0996 REMARK 3 S31: -0.1044 S32: 0.0183 S33: 0.0467 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 160 B 185 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2202 19.7700 23.7116 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.0880 REMARK 3 T33: 0.1299 T12: 0.0186 REMARK 3 T13: -0.0600 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 4.8263 L22: 1.3964 REMARK 3 L33: 2.1685 L12: 0.3915 REMARK 3 L13: -0.5835 L23: -0.0998 REMARK 3 S TENSOR REMARK 3 S11: -0.1290 S12: 0.2292 S13: 0.3475 REMARK 3 S21: -0.1803 S22: 0.1074 S23: 0.2344 REMARK 3 S31: -0.2680 S32: -0.3363 S33: 0.0216 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 186 B 188 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3365 17.6658 10.6233 REMARK 3 T TENSOR REMARK 3 T11: 1.2771 T22: 0.6165 REMARK 3 T33: 0.3033 T12: 0.0077 REMARK 3 T13: 0.1618 T23: 0.1564 REMARK 3 L TENSOR REMARK 3 L11: 55.5333 L22: 0.0351 REMARK 3 L33: 14.2310 L12: -0.5970 REMARK 3 L13: 5.7105 L23: -0.1472 REMARK 3 S TENSOR REMARK 3 S11: 0.2397 S12: 4.5293 S13: 2.1699 REMARK 3 S21: -0.1905 S22: -0.1150 S23: -0.0490 REMARK 3 S31: -0.1108 S32: 0.5023 S33: -0.1247 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 189 B 232 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9392 15.3160 27.5996 REMARK 3 T TENSOR REMARK 3 T11: 0.0872 T22: 0.0201 REMARK 3 T33: 0.0520 T12: 0.0007 REMARK 3 T13: -0.0099 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.7306 L22: 1.4538 REMARK 3 L33: 1.5245 L12: 0.5696 REMARK 3 L13: 0.5382 L23: -0.1516 REMARK 3 S TENSOR REMARK 3 S11: -0.0641 S12: 0.1583 S13: -0.0315 REMARK 3 S21: -0.1356 S22: 0.0927 S23: -0.0690 REMARK 3 S31: -0.0592 S32: -0.0770 S33: -0.0285 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 233 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0150 14.3331 48.6786 REMARK 3 T TENSOR REMARK 3 T11: 0.0670 T22: 0.0831 REMARK 3 T33: 0.0532 T12: -0.0019 REMARK 3 T13: -0.0026 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 3.4390 L22: 6.9903 REMARK 3 L33: 13.9105 L12: -1.8704 REMARK 3 L13: 3.9136 L23: -5.8738 REMARK 3 S TENSOR REMARK 3 S11: 0.0669 S12: -0.1139 S13: 0.0538 REMARK 3 S21: 0.2077 S22: -0.0592 S23: -0.0568 REMARK 3 S31: -0.1568 S32: 0.2454 S33: -0.0077 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 8 REMARK 3 ORIGIN FOR THE GROUP (A): 36.9962 18.2286 70.2977 REMARK 3 T TENSOR REMARK 3 T11: 0.0631 T22: 0.1799 REMARK 3 T33: 0.0756 T12: -0.0464 REMARK 3 T13: 0.0140 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 7.7834 L22: 8.0129 REMARK 3 L33: 6.7010 L12: -4.3242 REMARK 3 L13: 2.1248 L23: -2.4501 REMARK 3 S TENSOR REMARK 3 S11: 0.1777 S12: 0.5004 S13: -0.1023 REMARK 3 S21: -0.6153 S22: -0.0848 S23: -0.2901 REMARK 3 S31: 0.0147 S32: 0.6890 S33: -0.0928 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 14 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9401 24.8303 81.8705 REMARK 3 T TENSOR REMARK 3 T11: 0.0542 T22: 0.0805 REMARK 3 T33: 0.1398 T12: -0.0029 REMARK 3 T13: 0.0102 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 3.3815 L22: 2.3411 REMARK 3 L33: 8.5003 L12: 0.2395 REMARK 3 L13: 3.6329 L23: 0.7068 REMARK 3 S TENSOR REMARK 3 S11: -0.1045 S12: -0.1290 S13: 0.3315 REMARK 3 S21: -0.0859 S22: -0.0211 S23: 0.1416 REMARK 3 S31: -0.4130 S32: -0.2595 S33: 0.1256 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 16 D 59 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6832 3.2595 75.8189 REMARK 3 T TENSOR REMARK 3 T11: 0.0382 T22: 0.1026 REMARK 3 T33: 0.0406 T12: 0.0052 REMARK 3 T13: -0.0136 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.3899 L22: 3.6570 REMARK 3 L33: 1.8366 L12: -0.3848 REMARK 3 L13: 0.1883 L23: -0.6964 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.0883 S13: -0.0675 REMARK 3 S21: -0.1177 S22: -0.0014 S23: 0.2652 REMARK 3 S31: 0.1645 S32: -0.1070 S33: 0.0131 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 60 D 68 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7379 -10.1377 77.6039 REMARK 3 T TENSOR REMARK 3 T11: 0.1364 T22: 0.1056 REMARK 3 T33: 0.1088 T12: -0.0040 REMARK 3 T13: 0.0087 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.9057 L22: 3.5362 REMARK 3 L33: 4.0621 L12: 0.5969 REMARK 3 L13: -0.4543 L23: -2.7003 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: 0.0021 S13: -0.1302 REMARK 3 S21: -0.3295 S22: -0.0783 S23: 0.0492 REMARK 3 S31: 0.6323 S32: -0.0286 S33: 0.0944 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 69 D 81 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7846 9.6621 64.2258 REMARK 3 T TENSOR REMARK 3 T11: 0.0741 T22: 0.1017 REMARK 3 T33: 0.0572 T12: 0.0074 REMARK 3 T13: -0.0130 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 5.7768 L22: 3.1232 REMARK 3 L33: 3.5728 L12: -1.4989 REMARK 3 L13: 2.3352 L23: -0.8878 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: 0.1512 S13: -0.3407 REMARK 3 S21: -0.2403 S22: 0.0265 S23: 0.1649 REMARK 3 S31: 0.2658 S32: 0.0588 S33: -0.0017 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 82 D 122 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3064 -2.4430 76.5151 REMARK 3 T TENSOR REMARK 3 T11: 0.0743 T22: 0.1135 REMARK 3 T33: 0.0733 T12: 0.0406 REMARK 3 T13: 0.0221 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.5534 L22: 4.0755 REMARK 3 L33: 3.6355 L12: -0.0095 REMARK 3 L13: 0.7364 L23: -1.3640 REMARK 3 S TENSOR REMARK 3 S11: 0.0688 S12: 0.0686 S13: -0.1937 REMARK 3 S21: -0.2965 S22: -0.1150 S23: -0.1309 REMARK 3 S31: 0.4910 S32: 0.1831 S33: 0.0462 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 123 D 131 REMARK 3 ORIGIN FOR THE GROUP (A): 46.3928 12.4366 86.9840 REMARK 3 T TENSOR REMARK 3 T11: 0.0760 T22: 0.1965 REMARK 3 T33: 0.1498 T12: -0.0228 REMARK 3 T13: -0.0399 T23: 0.0663 REMARK 3 L TENSOR REMARK 3 L11: 7.9942 L22: 6.9254 REMARK 3 L33: 9.6995 L12: -2.1693 REMARK 3 L13: -5.0946 L23: 6.1124 REMARK 3 S TENSOR REMARK 3 S11: 0.1527 S12: -0.4218 S13: 0.2070 REMARK 3 S21: 0.1485 S22: 0.0789 S23: -0.5252 REMARK 3 S31: -0.1025 S32: 0.9288 S33: -0.2316 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 132 D 167 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8734 11.6827 86.4557 REMARK 3 T TENSOR REMARK 3 T11: 0.0363 T22: 0.0662 REMARK 3 T33: 0.0607 T12: -0.0193 REMARK 3 T13: 0.0210 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 2.5114 L22: 1.3297 REMARK 3 L33: 6.6485 L12: -0.7193 REMARK 3 L13: 3.2248 L23: -0.4906 REMARK 3 S TENSOR REMARK 3 S11: 0.1571 S12: -0.2214 S13: -0.1042 REMARK 3 S21: 0.0795 S22: -0.1000 S23: 0.1383 REMARK 3 S31: 0.1315 S32: -0.4009 S33: -0.0571 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 168 D 180 REMARK 3 ORIGIN FOR THE GROUP (A): 35.0478 0.1454 99.6323 REMARK 3 T TENSOR REMARK 3 T11: 0.0857 T22: 0.0972 REMARK 3 T33: 0.0767 T12: -0.0045 REMARK 3 T13: -0.0482 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 10.5908 L22: 4.1964 REMARK 3 L33: 9.3552 L12: -1.9260 REMARK 3 L13: -7.5448 L23: 0.4409 REMARK 3 S TENSOR REMARK 3 S11: -0.1291 S12: -0.5268 S13: -0.2686 REMARK 3 S21: 0.2776 S22: 0.0559 S23: -0.1295 REMARK 3 S31: 0.2550 S32: 0.4862 S33: 0.0732 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 181 D 185 REMARK 3 ORIGIN FOR THE GROUP (A): 29.6184 12.1721 95.7901 REMARK 3 T TENSOR REMARK 3 T11: 0.0705 T22: 0.0779 REMARK 3 T33: 0.0677 T12: -0.0337 REMARK 3 T13: 0.0025 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 12.3516 L22: 10.0997 REMARK 3 L33: 7.5091 L12: -7.9161 REMARK 3 L13: -6.3468 L23: 2.5953 REMARK 3 S TENSOR REMARK 3 S11: -0.0470 S12: -0.4126 S13: 0.2181 REMARK 3 S21: 0.4875 S22: 0.0627 S23: 0.2341 REMARK 3 S31: -0.2035 S32: -0.0756 S33: -0.0157 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 186 D 213 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8209 12.8577 85.7998 REMARK 3 T TENSOR REMARK 3 T11: 0.0264 T22: 0.0600 REMARK 3 T33: 0.0247 T12: 0.0025 REMARK 3 T13: -0.0025 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.4085 L22: 4.7695 REMARK 3 L33: 1.6721 L12: 1.8703 REMARK 3 L13: -0.3958 L23: -0.9927 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: -0.1428 S13: 0.1517 REMARK 3 S21: 0.2394 S22: -0.0275 S23: 0.1739 REMARK 3 S31: -0.1358 S32: -0.0416 S33: -0.0122 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 214 D 245 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7825 0.9207 86.9300 REMARK 3 T TENSOR REMARK 3 T11: 0.0541 T22: 0.0686 REMARK 3 T33: 0.0609 T12: 0.0009 REMARK 3 T13: -0.0211 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 4.9005 L22: 2.6639 REMARK 3 L33: 5.4251 L12: -1.3541 REMARK 3 L13: -3.4507 L23: 1.3845 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: 0.1418 S13: -0.1656 REMARK 3 S21: 0.0250 S22: -0.0562 S23: -0.1473 REMARK 3 S31: 0.2359 S32: 0.1430 S33: 0.0797 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74112 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.39400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ID 1SHH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM KCL AND 20% PEG 3350, PH 6.9, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.71450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.18300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.66650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.18300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.71450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.66650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 14L REMARK 465 GLY A 14M REMARK 465 ARG A 15 REMARK 465 LEU B 144 REMARK 465 LYS B 145 REMARK 465 GLU B 146 REMARK 465 THR B 147 REMARK 465 TRP B 148 REMARK 465 THR B 149 REMARK 465 ALA B 149A REMARK 465 ASN B 149B REMARK 465 VAL B 149C REMARK 465 GLY B 149D REMARK 465 LYS B 149E REMARK 465 GLY B 150 REMARK 465 GLN B 151 REMARK 465 PRO B 152 REMARK 465 SER C 1E REMARK 465 GLY C 1D REMARK 465 GLU C 1C REMARK 465 ARG C 15 REMARK 465 LEU D 144 REMARK 465 LYS D 145 REMARK 465 GLU D 146 REMARK 465 THR D 147 REMARK 465 TRP D 148 REMARK 465 THR D 149 REMARK 465 ALA D 149A REMARK 465 ASN D 149B REMARK 465 VAL D 149C REMARK 465 GLY D 149D REMARK 465 GLY D 246 REMARK 465 GLU D 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 14C C ARG C 14D N 0.171 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 14D O - C - N ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG D 73 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 CYS D 182 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 7 -87.57 -124.64 REMARK 500 TYR B 60A 84.15 -156.40 REMARK 500 ASN B 60G 67.43 -159.48 REMARK 500 ASN B 78 15.71 57.33 REMARK 500 ILE B 79 -61.68 -124.44 REMARK 500 ASN B 95 77.09 -108.76 REMARK 500 GLU B 97A -77.17 -105.45 REMARK 500 CYS B 220 -103.63 58.37 REMARK 500 PHE C 7 -91.02 -126.64 REMARK 500 TYR D 60A 87.12 -153.68 REMARK 500 ASN D 60G 71.66 -158.99 REMARK 500 ASN D 95 78.93 -108.23 REMARK 500 GLU D 97A -77.78 -111.20 REMARK 500 SER D 195 135.43 -38.77 REMARK 500 CYS D 220 -99.76 56.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG C 14D -15.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 692 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH D 693 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH D 694 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH D 695 DISTANCE = 6.33 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SHH RELATED DB: PDB REMARK 900 SLOW FORM OF THROMBIN BOUND WITH PPACK DBREF 5JDU A 1E 15 UNP P00734 THRB_HUMAN 331 363 DBREF 5JDU B 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 5JDU C 1E 15 UNP P00734 THRB_HUMAN 331 363 DBREF 5JDU D 16 247 UNP P00734 THRB_HUMAN 364 622 SEQADV 5JDU ALA B 189 UNP P00734 ASP 562 ENGINEERED MUTATION SEQADV 5JDU ALA D 189 UNP P00734 ASP 562 ENGINEERED MUTATION SEQRES 1 A 33 SER GLY GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU SEQRES 2 A 33 LYS LYS SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU SEQRES 3 A 33 GLU SER TYR ILE ASP GLY ARG SEQRES 1 B 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 B 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 B 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 B 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 B 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 B 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 B 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 B 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 B 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 B 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 B 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 B 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 B 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 B 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 B 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 B 259 LYS ARG GLY ALA ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 B 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 B 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 B 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 B 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 C 33 SER GLY GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU SEQRES 2 C 33 LYS LYS SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU SEQRES 3 C 33 GLU SER TYR ILE ASP GLY ARG SEQRES 1 D 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 D 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 D 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 D 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 D 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 D 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 D 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 D 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 D 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 D 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 D 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 D 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 D 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 D 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 D 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 D 259 LYS ARG GLY ALA ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 D 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 D 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 D 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 D 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU MODRES 5JDU NAG E 1 NAG -D MODRES 5JDU NAG E 2 NAG -D MODRES 5JDU NAG F 1 NAG -D MODRES 5JDU NAG F 2 NAG -D HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET CL D 301 1 HET GOL D 302 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 NAG 4(C8 H15 N O6) FORMUL 7 CL CL 1- FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *622(H2 O) HELIX 1 AA1 PHE A 7 SER A 11 5 5 HELIX 2 AA2 THR A 14B SER A 14I 1 8 HELIX 3 AA3 ALA B 55 CYS B 58 5 4 HELIX 4 AA4 PRO B 60B ASP B 60E 5 4 HELIX 5 AA5 THR B 60I ASN B 62 5 3 HELIX 6 AA6 ASP B 125 LEU B 130 1 9 HELIX 7 AA7 GLU B 164 SER B 171 1 8 HELIX 8 AA8 CYS B 191 SER B 195 5 5 HELIX 9 AA9 LEU B 234 GLY B 246 1 13 HELIX 10 AB1 PHE C 7 SER C 11 5 5 HELIX 11 AB2 THR C 14B SER C 14I 1 8 HELIX 12 AB3 ALA D 55 CYS D 58 5 4 HELIX 13 AB4 PRO D 60B ASP D 60E 5 4 HELIX 14 AB5 THR D 60I ASN D 62 5 3 HELIX 15 AB6 ASP D 125 LEU D 130 1 9 HELIX 16 AB7 GLU D 164 SER D 171 1 8 HELIX 17 AB8 LYS D 185 GLY D 186C 5 5 HELIX 18 AB9 CYS D 191 SER D 195 5 5 HELIX 19 AC1 LEU D 234 PHE D 245 1 12 SHEET 1 AA1 7 SER B 20 ASP B 21 0 SHEET 2 AA1 7 GLN B 156 PRO B 161 -1 O VAL B 157 N SER B 20 SHEET 3 AA1 7 LYS B 135 GLY B 140 -1 N GLY B 140 O GLN B 156 SHEET 4 AA1 7 PRO B 198 LYS B 202 -1 O VAL B 200 N ARG B 137 SHEET 5 AA1 7 TRP B 207 GLY B 216 -1 O TYR B 208 N MET B 201 SHEET 6 AA1 7 GLY B 226 HIS B 230 -1 O PHE B 227 N TRP B 215 SHEET 7 AA1 7 MET B 180 ALA B 183 -1 N PHE B 181 O TYR B 228 SHEET 1 AA2 7 GLN B 30 ARG B 35 0 SHEET 2 AA2 7 GLU B 39 LEU B 46 -1 O LEU B 41 N LEU B 33 SHEET 3 AA2 7 TRP B 51 THR B 54 -1 O LEU B 53 N SER B 45 SHEET 4 AA2 7 ALA B 104 LEU B 108 -1 O MET B 106 N VAL B 52 SHEET 5 AA2 7 LYS B 81 ILE B 90 -1 N GLU B 86 O LYS B 107 SHEET 6 AA2 7 LEU B 64 ILE B 68 -1 N ILE B 68 O LYS B 81 SHEET 7 AA2 7 GLN B 30 ARG B 35 -1 N PHE B 34 O LEU B 65 SHEET 1 AA3 2 LEU B 60 TYR B 60A 0 SHEET 2 AA3 2 LYS B 60F ASN B 60G-1 O LYS B 60F N TYR B 60A SHEET 1 AA4 7 SER D 20 ASP D 21 0 SHEET 2 AA4 7 GLN D 156 PRO D 161 -1 O VAL D 157 N SER D 20 SHEET 3 AA4 7 LYS D 135 GLY D 140 -1 N GLY D 140 O GLN D 156 SHEET 4 AA4 7 PRO D 198 LYS D 202 -1 O VAL D 200 N ARG D 137 SHEET 5 AA4 7 TRP D 207 GLY D 216 -1 O TYR D 208 N MET D 201 SHEET 6 AA4 7 GLY D 226 HIS D 230 -1 O PHE D 227 N TRP D 215 SHEET 7 AA4 7 MET D 180 ALA D 183 -1 N PHE D 181 O TYR D 228 SHEET 1 AA5 7 GLN D 30 ARG D 35 0 SHEET 2 AA5 7 GLU D 39 LEU D 46 -1 O LEU D 41 N LEU D 33 SHEET 3 AA5 7 TRP D 51 THR D 54 -1 O LEU D 53 N SER D 45 SHEET 4 AA5 7 ALA D 104 LEU D 108 -1 O MET D 106 N VAL D 52 SHEET 5 AA5 7 LYS D 81 ILE D 90 -1 N GLU D 86 O LYS D 107 SHEET 6 AA5 7 LEU D 64 ILE D 68 -1 N ILE D 68 O LYS D 81 SHEET 7 AA5 7 GLN D 30 ARG D 35 -1 N PHE D 34 O LEU D 65 SHEET 1 AA6 2 LEU D 60 TYR D 60A 0 SHEET 2 AA6 2 LYS D 60F ASN D 60G-1 O LYS D 60F N TYR D 60A SSBOND 1 CYS A 1 CYS B 122 1555 1555 2.05 SSBOND 2 CYS B 42 CYS B 58 1555 1555 2.02 SSBOND 3 CYS B 168 CYS B 182 1555 1555 2.05 SSBOND 4 CYS B 191 CYS B 220 1555 1555 2.07 SSBOND 5 CYS C 1 CYS D 122 1555 1555 2.08 SSBOND 6 CYS D 42 CYS D 58 1555 1555 2.05 SSBOND 7 CYS D 168 CYS D 182 1555 1555 2.08 SSBOND 8 CYS D 191 CYS D 220 1555 1555 2.09 LINK ND2 ASN B 60G C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN D 60G C1 NAG F 1 1555 1555 1.44 LINK O6 NAG E 1 C1 NAG E 2 1555 1555 1.43 LINK O6 NAG F 1 C1 NAG F 2 1555 1555 1.43 CISPEP 1 SER B 36A PRO B 37 0 -5.74 CISPEP 2 SER D 36A PRO D 37 0 -9.37 CRYST1 55.429 81.333 146.366 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006832 0.00000