HEADER TRANSFERASE 17-APR-16 5JE3 TITLE CRYSTAL STRUCTURE OF BURKHOLDERIA GLUMAE TOXA Y7A MUTANT WITH BOUND S- TITLE 2 ADENOSYLHOMOCYSTEINE (SAH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: METHYLTRANSFERASE,PUTATIVE UBIQUINONE/MENAQUINONE COMPND 5 BIOSYNTHESIS METHYLTRANSFERASE,TRP-1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA GLUMAE; SOURCE 3 ORGANISM_TAXID: 337; SOURCE 4 GENE: TOXA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS N-METHYLTRANSFERASE, S-ADENOSYLMETHIONINE (SAM), MUTANT, PRODUCT KEYWDS 2 COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK REVDAT 6 03-APR-24 5JE3 1 REMARK REVDAT 5 06-MAR-24 5JE3 1 REMARK REVDAT 4 04-DEC-19 5JE3 1 REMARK REVDAT 3 20-SEP-17 5JE3 1 HEADER JRNL REMARK REVDAT 2 25-MAY-16 5JE3 1 JRNL REVDAT 1 04-MAY-16 5JE3 0 JRNL AUTH M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK JRNL TITL BURKHOLDERIA GLUMAE TOXA IS A DUAL-SPECIFICITY JRNL TITL 2 METHYLTRANSFERASE THAT CATALYZES THE LAST TWO STEPS OF JRNL TITL 3 TOXOFLAVIN BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 55 2748 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27070241 JRNL DOI 10.1021/ACS.BIOCHEM.6B00167 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10-2155-000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 43335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2122 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7001 - 4.4156 0.99 2965 162 0.1592 0.1847 REMARK 3 2 4.4156 - 3.5060 1.00 2888 118 0.1348 0.1870 REMARK 3 3 3.5060 - 3.0631 1.00 2815 156 0.1534 0.1824 REMARK 3 4 3.0631 - 2.7832 1.00 2790 147 0.1717 0.2340 REMARK 3 5 2.7832 - 2.5838 1.00 2780 158 0.1712 0.2313 REMARK 3 6 2.5838 - 2.4315 1.00 2814 132 0.1803 0.2363 REMARK 3 7 2.4315 - 2.3098 1.00 2759 139 0.1752 0.2223 REMARK 3 8 2.3098 - 2.2093 1.00 2787 129 0.1782 0.1970 REMARK 3 9 2.2093 - 2.1242 1.00 2731 169 0.1682 0.2584 REMARK 3 10 2.1242 - 2.0509 1.00 2738 146 0.1752 0.2016 REMARK 3 11 2.0509 - 1.9868 1.00 2791 135 0.1760 0.2217 REMARK 3 12 1.9868 - 1.9300 1.00 2749 134 0.1917 0.2271 REMARK 3 13 1.9300 - 1.8792 1.00 2746 139 0.2052 0.2608 REMARK 3 14 1.8792 - 1.8334 1.00 2732 148 0.2089 0.2913 REMARK 3 15 1.8334 - 1.7917 0.77 2128 110 0.2286 0.2509 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3728 REMARK 3 ANGLE : 0.924 5054 REMARK 3 CHIRALITY : 0.059 516 REMARK 3 PLANARITY : 0.006 662 REMARK 3 DIHEDRAL : 13.799 2178 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2374 28.1797 80.3139 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1818 REMARK 3 T33: 0.1326 T12: 0.0019 REMARK 3 T13: -0.0208 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 4.7044 L22: 2.2865 REMARK 3 L33: 4.4394 L12: -0.4194 REMARK 3 L13: -0.1366 L23: 0.9819 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: 0.3572 S13: -0.0161 REMARK 3 S21: -0.0883 S22: -0.0544 S23: 0.1295 REMARK 3 S31: -0.0271 S32: -0.5036 S33: 0.0107 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0282 40.5086 85.9455 REMARK 3 T TENSOR REMARK 3 T11: 0.2854 T22: 0.2575 REMARK 3 T33: 0.4616 T12: 0.1294 REMARK 3 T13: 0.0382 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 8.1332 L22: 6.6025 REMARK 3 L33: 8.2343 L12: 1.0175 REMARK 3 L13: 1.9093 L23: 0.7543 REMARK 3 S TENSOR REMARK 3 S11: -0.3754 S12: 0.0956 S13: 1.1459 REMARK 3 S21: -0.1019 S22: 0.1743 S23: 0.7138 REMARK 3 S31: -1.1227 S32: -0.4974 S33: 0.0537 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5913 29.0256 93.4328 REMARK 3 T TENSOR REMARK 3 T11: 0.1897 T22: 0.2610 REMARK 3 T33: 0.1811 T12: 0.0118 REMARK 3 T13: 0.0683 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 2.2728 L22: 5.3444 REMARK 3 L33: 5.2556 L12: -0.3851 REMARK 3 L13: 0.4323 L23: -0.6083 REMARK 3 S TENSOR REMARK 3 S11: -0.2371 S12: -0.4685 S13: -0.0897 REMARK 3 S21: 0.5268 S22: 0.2281 S23: 0.4174 REMARK 3 S31: -0.1725 S32: -0.3581 S33: -0.0154 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8863 28.8712 88.0846 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.1364 REMARK 3 T33: 0.1029 T12: 0.0062 REMARK 3 T13: -0.0194 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 4.3520 L22: 3.2515 REMARK 3 L33: 2.0400 L12: 1.4973 REMARK 3 L13: -0.7381 L23: -1.1477 REMARK 3 S TENSOR REMARK 3 S11: -0.1191 S12: -0.0066 S13: 0.1171 REMARK 3 S21: 0.0620 S22: 0.0347 S23: -0.1413 REMARK 3 S31: 0.0060 S32: 0.1257 S33: 0.0735 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6738 42.7187 84.7794 REMARK 3 T TENSOR REMARK 3 T11: 0.2953 T22: 0.2353 REMARK 3 T33: 0.3967 T12: -0.0504 REMARK 3 T13: -0.0326 T23: -0.0414 REMARK 3 L TENSOR REMARK 3 L11: 4.3362 L22: 4.2902 REMARK 3 L33: 2.4046 L12: 0.7798 REMARK 3 L13: 0.8579 L23: -1.6196 REMARK 3 S TENSOR REMARK 3 S11: -0.0593 S12: -0.3408 S13: 0.8772 REMARK 3 S21: 0.2538 S22: -0.0038 S23: 0.3974 REMARK 3 S31: -0.5044 S32: -0.0280 S33: 0.1560 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9845 24.0032 81.2986 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.1951 REMARK 3 T33: 0.1835 T12: 0.0152 REMARK 3 T13: 0.0145 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 2.2607 L22: 3.6301 REMARK 3 L33: 3.2718 L12: -1.1403 REMARK 3 L13: 1.7005 L23: -3.4783 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: 0.1198 S13: -0.2078 REMARK 3 S21: -0.1447 S22: 0.0116 S23: -0.0222 REMARK 3 S31: 0.4698 S32: 0.3890 S33: -0.1139 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4696 31.9973 72.4793 REMARK 3 T TENSOR REMARK 3 T11: 0.2090 T22: 0.2664 REMARK 3 T33: 0.1975 T12: -0.0485 REMARK 3 T13: -0.0297 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 2.3621 L22: 2.2699 REMARK 3 L33: 7.1734 L12: -0.9474 REMARK 3 L13: 1.0424 L23: -1.7236 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: 0.5438 S13: 0.4881 REMARK 3 S21: -0.5763 S22: 0.2059 S23: 0.3414 REMARK 3 S31: 0.1488 S32: 0.5532 S33: -0.1196 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6270 27.5821 49.9556 REMARK 3 T TENSOR REMARK 3 T11: 0.1820 T22: 0.2706 REMARK 3 T33: 0.1449 T12: -0.0163 REMARK 3 T13: -0.0071 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 3.5702 L22: 1.7844 REMARK 3 L33: 3.6539 L12: 0.4762 REMARK 3 L13: 0.0293 L23: -0.3520 REMARK 3 S TENSOR REMARK 3 S11: 0.2338 S12: -0.8649 S13: -0.1345 REMARK 3 S21: 0.0717 S22: -0.3384 S23: 0.0079 REMARK 3 S31: 0.1387 S32: 0.1001 S33: -0.0931 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3525 32.2289 41.1523 REMARK 3 T TENSOR REMARK 3 T11: 0.1566 T22: 0.1186 REMARK 3 T33: 0.1758 T12: 0.0196 REMARK 3 T13: 0.0516 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 4.1052 L22: 3.6617 REMARK 3 L33: 5.1504 L12: 0.2274 REMARK 3 L13: 0.4247 L23: -1.0480 REMARK 3 S TENSOR REMARK 3 S11: 0.0212 S12: -0.0462 S13: 0.1782 REMARK 3 S21: -0.1738 S22: -0.1147 S23: -0.3441 REMARK 3 S31: -0.1088 S32: 0.3635 S33: 0.0973 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9670 28.9132 40.2372 REMARK 3 T TENSOR REMARK 3 T11: 0.1736 T22: 0.1521 REMARK 3 T33: 0.1170 T12: -0.0278 REMARK 3 T13: -0.0211 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 4.7618 L22: 3.7041 REMARK 3 L33: 2.2290 L12: -1.3678 REMARK 3 L13: -0.5859 L23: 0.8662 REMARK 3 S TENSOR REMARK 3 S11: -0.0341 S12: -0.1375 S13: -0.0018 REMARK 3 S21: -0.1341 S22: -0.0432 S23: 0.1454 REMARK 3 S31: 0.1160 S32: -0.2226 S33: 0.0633 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3925 43.5037 44.9011 REMARK 3 T TENSOR REMARK 3 T11: 0.3277 T22: 0.2828 REMARK 3 T33: 0.2956 T12: -0.1246 REMARK 3 T13: 0.0268 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 2.4499 L22: 2.6505 REMARK 3 L33: 9.2884 L12: -0.3314 REMARK 3 L13: 2.2497 L23: 1.2467 REMARK 3 S TENSOR REMARK 3 S11: 0.0499 S12: -0.3896 S13: 0.4191 REMARK 3 S21: 0.4102 S22: -0.3014 S23: 0.3235 REMARK 3 S31: -0.7715 S32: 0.2496 S33: 0.3163 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 172 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3361 36.0242 40.5866 REMARK 3 T TENSOR REMARK 3 T11: 0.1888 T22: 0.2123 REMARK 3 T33: 0.1819 T12: -0.0811 REMARK 3 T13: -0.0460 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.7770 L22: 2.0934 REMARK 3 L33: 4.4806 L12: -1.0949 REMARK 3 L13: -0.2171 L23: -0.6713 REMARK 3 S TENSOR REMARK 3 S11: 0.2043 S12: -0.1533 S13: 0.1979 REMARK 3 S21: 0.1441 S22: -0.3044 S23: -0.1200 REMARK 3 S31: -0.3679 S32: 0.1720 S33: 0.0715 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 205 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6252 24.3279 53.5933 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.3614 REMARK 3 T33: 0.1942 T12: -0.0670 REMARK 3 T13: 0.0039 T23: 0.0631 REMARK 3 L TENSOR REMARK 3 L11: 1.1801 L22: 2.0068 REMARK 3 L33: 6.7037 L12: -0.3698 REMARK 3 L13: 0.4871 L23: 1.1070 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.5968 S13: -0.2610 REMARK 3 S21: 0.2820 S22: -0.1023 S23: 0.0534 REMARK 3 S31: 0.6977 S32: -0.2805 S33: -0.0157 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1167 32.1028 56.2301 REMARK 3 T TENSOR REMARK 3 T11: 0.2020 T22: 0.3656 REMARK 3 T33: 0.1660 T12: -0.0258 REMARK 3 T13: 0.0002 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.4293 L22: 2.0147 REMARK 3 L33: 5.4838 L12: -0.2473 REMARK 3 L13: 0.0009 L23: 0.2794 REMARK 3 S TENSOR REMARK 3 S11: -0.0962 S12: -0.4450 S13: 0.1087 REMARK 3 S21: 0.5960 S22: 0.1729 S23: -0.0195 REMARK 3 S31: 0.1455 S32: -0.5151 S33: -0.0207 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JE3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 - 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43376 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 33.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX, PHASER REMARK 200 STARTING MODEL: BURKHOLDERIA GLUMAE TOXA WITH BOUND SAH AND 1,6 REMARK 200 -DIDEMETHYLTOXOFLAVIN REMARK 200 REMARK 200 REMARK: PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 - 23% POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 2000, 100 MM TRIS, PH 6.1 - 6.8, AND 6 MM SAH, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.53550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.37850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.63250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.37850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.53550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.63250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 6 REMARK 465 ALA A 7 REMARK 465 ASP A 8 REMARK 465 SER A 9 REMARK 465 ILE A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 PHE A 14 REMARK 465 GLU A 15 REMARK 465 ASP A 16 REMARK 465 PHE A 17 REMARK 465 THR A 18 REMARK 465 GLN A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 THR A 181 REMARK 465 ASP A 182 REMARK 465 PRO A 183 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 ALA B 5 REMARK 465 ARG B 6 REMARK 465 ALA B 7 REMARK 465 ASP B 8 REMARK 465 SER B 9 REMARK 465 ILE B 10 REMARK 465 GLY B 11 REMARK 465 GLY B 12 REMARK 465 LEU B 13 REMARK 465 PHE B 14 REMARK 465 GLU B 15 REMARK 465 ASP B 16 REMARK 465 PHE B 17 REMARK 465 THR B 18 REMARK 465 GLN B 19 REMARK 465 SER B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 THR B 181 REMARK 465 ASP B 182 REMARK 465 PRO B 183 REMARK 465 PRO B 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 23 CG CD OE1 NE2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 GLN B 23 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 235 50.30 -153.74 REMARK 500 TRP B 112 43.59 70.88 REMARK 500 ASN B 235 52.40 -149.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 691 DISTANCE = 5.90 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JE6 RELATED DB: PDB REMARK 900 RELATED ID: 5JDY RELATED DB: PDB REMARK 900 RELATED ID: 5JDZ RELATED DB: PDB REMARK 900 RELATED ID: 5JE0 RELATED DB: PDB REMARK 900 RELATED ID: 5JE1 RELATED DB: PDB REMARK 900 RELATED ID: 5JE2 RELATED DB: PDB REMARK 900 RELATED ID: 5JE4 RELATED DB: PDB REMARK 900 RELATED ID: 5JE5 RELATED DB: PDB DBREF 5JE3 A 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 DBREF 5JE3 B 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 SEQADV 5JE3 GLY A -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE3 HIS A 0 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE3 ALA A 7 UNP Q9LBJ0 TYR 7 ENGINEERED MUTATION SEQADV 5JE3 GLY B -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE3 HIS B 0 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE3 ALA B 7 UNP Q9LBJ0 TYR 7 ENGINEERED MUTATION SEQRES 1 A 247 GLY HIS MET SER THR THR ALA ARG ALA ASP SER ILE GLY SEQRES 2 A 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 A 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 A 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 A 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 A 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 A 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 A 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 A 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 A 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 A 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 A 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 A 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 A 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 A 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 A 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 A 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 A 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 A 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO SEQRES 1 B 247 GLY HIS MET SER THR THR ALA ARG ALA ASP SER ILE GLY SEQRES 2 B 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 B 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 B 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 B 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 B 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 B 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 B 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 B 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 B 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 B 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 B 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 B 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 B 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 B 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 B 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 B 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 B 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 B 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO HET SAH A 301 26 HET SAH B 301 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 5 HOH *552(H2 O) HELIX 1 AA1 ARG A 24 GLY A 36 1 13 HELIX 2 AA2 GLY A 51 ARG A 60 1 10 HELIX 3 AA3 SER A 71 GLY A 86 1 16 HELIX 4 AA4 ASP A 95 MET A 99 5 5 HELIX 5 AA5 LEU A 113 ALA A 117 5 5 HELIX 6 AA6 SER A 119 SER A 133 1 15 HELIX 7 AA7 SER A 150 GLY A 154 5 5 HELIX 8 AA8 PHE A 156 TYR A 159 5 4 HELIX 9 AA9 SER A 193 ALA A 204 1 12 HELIX 10 AB1 GLU A 217 THR A 223 1 7 HELIX 11 AB2 TRP A 229 ASN A 235 1 7 HELIX 12 AB3 ARG B 24 GLY B 36 1 13 HELIX 13 AB4 GLY B 51 ARG B 60 1 10 HELIX 14 AB5 SER B 71 GLY B 86 1 16 HELIX 15 AB6 ASP B 95 MET B 99 5 5 HELIX 16 AB7 LEU B 113 ALA B 117 5 5 HELIX 17 AB8 SER B 119 SER B 133 1 15 HELIX 18 AB9 SER B 150 GLY B 154 5 5 HELIX 19 AC1 PHE B 156 TYR B 159 5 4 HELIX 20 AC2 SER B 193 GLY B 205 1 13 HELIX 21 AC3 GLU B 217 THR B 223 1 7 HELIX 22 AC4 TRP B 229 ASN B 235 1 7 SHEET 1 AA1 7 GLU A 90 VAL A 93 0 SHEET 2 AA1 7 LYS A 64 ASP A 69 1 N GLY A 67 O GLU A 90 SHEET 3 AA1 7 SER A 42 LEU A 46 1 N ASP A 45 O VAL A 66 SHEET 4 AA1 7 PHE A 105 ALA A 111 1 O ASN A 109 N LEU A 44 SHEET 5 AA1 7 LEU A 134 VAL A 145 1 O LYS A 135 N PHE A 105 SHEET 6 AA1 7 GLN A 238 LYS A 244 -1 O LEU A 241 N ALA A 142 SHEET 7 AA1 7 HIS A 208 GLN A 212 -1 N GLN A 212 O GLY A 240 SHEET 1 AA2 3 VAL A 161 VAL A 163 0 SHEET 2 AA2 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA2 3 ARG A 167 TRP A 169 -1 N ARG A 167 O ARG A 174 SHEET 1 AA3 3 VAL A 161 VAL A 163 0 SHEET 2 AA3 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA3 3 GLN A 186 ARG A 191 -1 O ARG A 191 N TYR A 173 SHEET 1 AA4 7 GLU B 90 VAL B 93 0 SHEET 2 AA4 7 LYS B 64 ASP B 69 1 N GLY B 67 O GLU B 90 SHEET 3 AA4 7 SER B 42 LEU B 46 1 N ASP B 45 O VAL B 66 SHEET 4 AA4 7 PHE B 105 ALA B 111 1 O ASN B 109 N LEU B 46 SHEET 5 AA4 7 LEU B 134 VAL B 145 1 O VAL B 141 N VAL B 108 SHEET 6 AA4 7 GLN B 238 LYS B 244 -1 O LEU B 241 N ALA B 142 SHEET 7 AA4 7 HIS B 208 GLN B 212 -1 N GLN B 212 O GLY B 240 SHEET 1 AA5 3 VAL B 161 VAL B 163 0 SHEET 2 AA5 3 GLY B 172 PHE B 179 -1 O GLU B 178 N ASN B 162 SHEET 3 AA5 3 ARG B 167 TRP B 169 -1 N ARG B 167 O ARG B 174 SHEET 1 AA6 3 VAL B 161 VAL B 163 0 SHEET 2 AA6 3 GLY B 172 PHE B 179 -1 O GLU B 178 N ASN B 162 SHEET 3 AA6 3 GLN B 186 ARG B 191 -1 O ARG B 191 N TYR B 173 SITE 1 AC1 21 ARG A 24 ALA A 47 CYS A 48 GLY A 49 SITE 2 AC1 21 PHE A 53 ASP A 69 ILE A 70 ARG A 94 SITE 3 AC1 21 ASP A 95 VAL A 96 ALA A 111 TRP A 112 SITE 4 AC1 21 TYR A 116 MET A 126 HOH A 445 HOH A 489 SITE 5 AC1 21 HOH A 497 HOH A 516 HOH A 554 HOH A 561 SITE 6 AC1 21 HOH A 582 SITE 1 AC2 20 ARG B 24 ALA B 47 CYS B 48 GLY B 49 SITE 2 AC2 20 PHE B 53 ASP B 69 ILE B 70 ARG B 94 SITE 3 AC2 20 ASP B 95 VAL B 96 ALA B 111 TRP B 112 SITE 4 AC2 20 TYR B 116 MET B 126 HOH B 429 HOH B 449 SITE 5 AC2 20 HOH B 461 HOH B 496 HOH B 511 HOH B 563 CRYST1 47.071 67.265 144.757 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021245 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014867 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006908 0.00000