HEADER METAL BINDING PROTEIN/TRANSCRIPTION 20-APR-16 5JH5 TITLE STRUCTURAL BASIS FOR THE HIERARCHICAL ASSEMBLY OF THE CORE OF PRC1.1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 2B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1059-1336; COMPND 5 SYNONYM: CXXC-TYPE ZINC FINGER PROTEIN 2,F-BOX AND LEUCINE-RICH COMPND 6 REPEAT PROTEIN 10,F-BOX PROTEIN FBL10,F-BOX/LRR-REPEAT PROTEIN 10, COMPND 7 JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1B,JUMONJI COMPND 8 DOMAIN-CONTAINING EMSY-INTERACTOR METHYLTRANSFERASE MOTIF PROTEIN, COMPND 9 PROTEIN JEMMA,PROTEIN-CONTAINING CXXC DOMAIN 2,[HISTONE-H3]-LYSINE-36 COMPND 10 DEMETHYLASE 1B; COMPND 11 EC: 1.14.11.27; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 2; COMPND 14 MOLECULE: S-PHASE KINASE-ASSOCIATED PROTEIN 1; COMPND 15 CHAIN: B; COMPND 16 FRAGMENT: RESIDUES 2-163; COMPND 17 SYNONYM: CYCLIN-A/CDK2-ASSOCIATED PROTEIN P19,P19A,ORGAN OF CORTI COMPND 18 PROTEIN 2,OCP-2,ORGAN OF CORTI PROTEIN II,OCP-II,RNA POLYMERASE II COMPND 19 ELONGATION FACTOR-LIKE PROTEIN,SIII,TRANSCRIPTION ELONGATION FACTOR B COMPND 20 POLYPEPTIDE 1-LIKE,P19SKP1; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 3; COMPND 23 MOLECULE: POLYCOMB GROUP RING FINGER PROTEIN 1; COMPND 24 CHAIN: C; COMPND 25 FRAGMENT: RESIDUES 150-255; COMPND 26 SYNONYM: NERVOUS SYSTEM POLYCOMB-1,NSPC1,RING FINGER PROTEIN 68; COMPND 27 ENGINEERED: YES; COMPND 28 MOL_ID: 4; COMPND 29 MOLECULE: BCL-6 COREPRESSOR-LIKE PROTEIN 1; COMPND 30 CHAIN: D; COMPND 31 FRAGMENT: RESIDUES 1594-1711; COMPND 32 SYNONYM: BCOR-LIKE PROTEIN 1; COMPND 33 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KDM2B, CXXC2, FBL10, FBXL10, JHDM1B, PCCX2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SKP1, EMC19, OCP2, SKP1A, TCEB1L; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: PCGF1, NSPC1, RNF68; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: BCORL1; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GENE REPRESSION, COMPLEX, TRANSCRIPTION REGULATION, TRANSCRIPTION KEYWDS 2 REPRESSOR, METAL BINDING PROTEIN-TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.J.WONG,A.B.TAYLOR,P.J.HART,C.A.KIM REVDAT 2 19-OCT-16 5JH5 1 JRNL REVDAT 1 14-SEP-16 5JH5 0 JRNL AUTH S.J.WONG,M.D.GEARHART,A.B.TAYLOR,D.R.NANYES,D.J.HA, JRNL AUTH 2 A.K.ROBINSON,J.A.ARTIGAS,O.J.LEE,B.DEMELER,P.J.HART, JRNL AUTH 3 V.J.BARDWELL,C.A.KIM JRNL TITL KDM2B RECRUITMENT OF THE POLYCOMB GROUP COMPLEX, PRC1.1, JRNL TITL 2 REQUIRES COOPERATION BETWEEN PCGF1 AND BCORL1. JRNL REF STRUCTURE V. 24 1795 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27568929 JRNL DOI 10.1016/J.STR.2016.07.011 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 21412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.320 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.3018 - 7.6457 1.00 1356 133 0.1789 0.2133 REMARK 3 2 7.6457 - 6.0702 1.00 1339 138 0.2070 0.2255 REMARK 3 3 6.0702 - 5.3033 1.00 1353 130 0.1806 0.2190 REMARK 3 4 5.3033 - 4.8186 0.99 1334 148 0.1645 0.1602 REMARK 3 5 4.8186 - 4.4734 1.00 1345 146 0.1594 0.1858 REMARK 3 6 4.4734 - 4.2097 1.00 1339 136 0.1610 0.2120 REMARK 3 7 4.2097 - 3.9989 1.00 1351 138 0.1647 0.2384 REMARK 3 8 3.9989 - 3.8248 0.99 1331 147 0.1830 0.2193 REMARK 3 9 3.8248 - 3.6776 1.00 1335 141 0.1893 0.2795 REMARK 3 10 3.6776 - 3.5507 1.00 1355 131 0.2023 0.2556 REMARK 3 11 3.5507 - 3.4397 1.00 1362 148 0.2145 0.2779 REMARK 3 12 3.4397 - 3.3414 0.99 1328 117 0.2320 0.2815 REMARK 3 13 3.3414 - 3.2534 1.00 1337 146 0.2248 0.2992 REMARK 3 14 3.2534 - 3.1740 1.00 1342 136 0.2213 0.2954 REMARK 3 15 3.1740 - 3.1019 1.00 1365 132 0.2228 0.3389 REMARK 3 16 3.1019 - 3.0359 1.00 1356 143 0.2363 0.3012 REMARK 3 17 3.0359 - 2.9752 1.00 1342 141 0.2382 0.3014 REMARK 3 18 2.9752 - 2.9190 1.00 1323 134 0.2507 0.3318 REMARK 3 19 2.9190 - 2.8669 1.00 1383 130 0.2642 0.3807 REMARK 3 20 2.8669 - 2.8183 1.00 1316 146 0.2668 0.3905 REMARK 3 21 2.8183 - 2.7728 1.00 1368 157 0.2444 0.3289 REMARK 3 22 2.7728 - 2.7302 1.00 1318 136 0.2546 0.3421 REMARK 3 23 2.7302 - 2.6900 1.00 1366 138 0.2773 0.3593 REMARK 3 24 2.6900 - 2.6521 0.99 1329 154 0.2847 0.3407 REMARK 3 25 2.6521 - 2.6163 0.99 1334 111 0.3171 0.3997 REMARK 3 26 2.6163 - 2.5823 0.97 1310 136 0.3262 0.3416 REMARK 3 27 2.5823 - 2.5500 0.96 1316 132 0.3396 0.3985 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5049 REMARK 3 ANGLE : 0.670 6824 REMARK 3 CHIRALITY : 0.063 776 REMARK 3 PLANARITY : 0.004 861 REMARK 3 DIHEDRAL : 16.278 1921 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220573. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979620 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21463 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 63.282 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.97000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 10 % 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, 10 MM NACL, PH 7.25, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.02450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.50700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.89800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.50700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.02450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.89800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1056 REMARK 465 THR A 1057 REMARK 465 ARG A 1058 REMARK 465 ASP A 1059 REMARK 465 GLY A 1060 REMARK 465 ALA A 1061 REMARK 465 ALA A 1062 REMARK 465 HIS A 1063 REMARK 465 VAL A 1064 REMARK 465 GLY A 1204 REMARK 465 GLN A 1205 REMARK 465 MSE A 1206 REMARK 465 ASP A 1207 REMARK 465 SER A 1336 REMARK 465 ASP B 37 REMARK 465 ASP B 38 REMARK 465 GLU B 39 REMARK 465 GLY B 40 REMARK 465 ASP B 41 REMARK 465 ASP B 42 REMARK 465 ASP B 43 REMARK 465 ASP B 75 REMARK 465 GLU B 76 REMARK 465 CYS B 160 REMARK 465 GLU B 161 REMARK 465 GLU B 162 REMARK 465 LYS B 163 REMARK 465 GLY C 147 REMARK 465 THR C 148 REMARK 465 ARG C 149 REMARK 465 LEU C 150 REMARK 465 PRO C 151 REMARK 465 PHE C 152 REMARK 465 SER C 153 REMARK 465 SER C 154 REMARK 465 PHE C 155 REMARK 465 ASP C 156 REMARK 465 SER C 178 REMARK 465 GLY C 179 REMARK 465 LYS C 180 REMARK 465 ASP C 181 REMARK 465 LYS C 182 REMARK 465 ASN C 183 REMARK 465 LYS C 184 REMARK 465 SER C 185 REMARK 465 VAL C 186 REMARK 465 LEU C 187 REMARK 465 GLN C 188 REMARK 465 MSE D 1590 REMARK 465 GLU D 1591 REMARK 465 THR D 1592 REMARK 465 ARG D 1593 REMARK 465 GLY D 1674 REMARK 465 LEU D 1675 REMARK 465 ASP D 1676 REMARK 465 ASP D 1677 REMARK 465 ARG D 1678 REMARK 465 SER D 1679 REMARK 465 PRO D 1680 REMARK 465 PRO D 1681 REMARK 465 GLY D 1682 REMARK 465 SER D 1683 REMARK 465 SER D 1684 REMARK 465 ASN D 1710 REMARK 465 SER D 1711 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 1306 NZ LYS A 1330 1.77 REMARK 500 NH2 ARG C 193 O LEU D 1606 2.05 REMARK 500 O GLN B 152 N GLU B 156 2.13 REMARK 500 O ASP B 74 O LYS B 78 2.14 REMARK 500 OD2 ASP A 1283 OG1 THR A 1307 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1200 145.56 -175.24 REMARK 500 ASP A1224 48.48 -91.87 REMARK 500 SER A1241 -50.19 -128.59 REMARK 500 GLU A1329 -128.49 51.26 REMARK 500 LEU B 34 -147.32 -146.85 REMARK 500 LEU B 47 79.09 -108.03 REMARK 500 REMARK 500 REMARK: NULL DBREF 5JH5 A 1059 1336 UNP Q8NHM5 KDM2B_HUMAN 1059 1336 DBREF 5JH5 B 2 163 UNP P63208 SKP1_HUMAN 2 163 DBREF 5JH5 C 150 255 UNP Q9BSM1 PCGF1_HUMAN 150 255 DBREF 5JH5 D 1594 1711 UNP Q5H9F3 BCORL_HUMAN 1594 1711 SEQADV 5JH5 GLY A 1056 UNP Q8NHM5 EXPRESSION TAG SEQADV 5JH5 THR A 1057 UNP Q8NHM5 EXPRESSION TAG SEQADV 5JH5 ARG A 1058 UNP Q8NHM5 EXPRESSION TAG SEQADV 5JH5 GLY C 147 UNP Q9BSM1 EXPRESSION TAG SEQADV 5JH5 THR C 148 UNP Q9BSM1 EXPRESSION TAG SEQADV 5JH5 ARG C 149 UNP Q9BSM1 EXPRESSION TAG SEQADV 5JH5 MSE D 1590 UNP Q5H9F3 INITIATING METHIONINE SEQADV 5JH5 GLU D 1591 UNP Q5H9F3 EXPRESSION TAG SEQADV 5JH5 THR D 1592 UNP Q5H9F3 EXPRESSION TAG SEQADV 5JH5 ARG D 1593 UNP Q5H9F3 EXPRESSION TAG SEQRES 1 A 281 GLY THR ARG ASP GLY ALA ALA HIS VAL MSE HIS ARG GLU SEQRES 2 A 281 VAL TRP MSE ALA VAL PHE SER TYR LEU SER HIS GLN ASP SEQRES 3 A 281 LEU CYS VAL CYS MSE ARG VAL CYS ARG THR TRP ASN ARG SEQRES 4 A 281 TRP CYS CYS ASP LYS ARG LEU TRP THR ARG ILE ASP LEU SEQRES 5 A 281 ASN HIS CYS LYS SER ILE THR PRO LEU MSE LEU SER GLY SEQRES 6 A 281 ILE ILE ARG ARG GLN PRO VAL SER LEU ASP LEU SER TRP SEQRES 7 A 281 THR ASN ILE SER LYS LYS GLN LEU SER TRP LEU ILE ASN SEQRES 8 A 281 ARG LEU PRO GLY LEU ARG ASP LEU VAL LEU SER GLY CYS SEQRES 9 A 281 SER TRP ILE ALA VAL SER ALA LEU CYS SER SER SER CYS SEQRES 10 A 281 PRO LEU LEU ARG THR LEU ASP VAL GLN TRP VAL GLU GLY SEQRES 11 A 281 LEU LYS ASP ALA GLN MSE ARG ASP LEU LEU SER PRO PRO SEQRES 12 A 281 THR ASP ASN ARG PRO GLY GLN MSE ASP ASN ARG SER LYS SEQRES 13 A 281 LEU ARG ASN ILE VAL GLU LEU ARG LEU ALA GLY LEU ASP SEQRES 14 A 281 ILE THR ASP ALA SER LEU ARG LEU ILE ILE ARG HIS MSE SEQRES 15 A 281 PRO LEU LEU SER LYS LEU HIS LEU SER TYR CYS ASN HIS SEQRES 16 A 281 VAL THR ASP GLN SER ILE ASN LEU LEU THR ALA VAL GLY SEQRES 17 A 281 THR THR THR ARG ASP SER LEU THR GLU ILE ASN LEU SER SEQRES 18 A 281 ASP CYS ASN LYS VAL THR ASP GLN CYS LEU SER PHE PHE SEQRES 19 A 281 LYS ARG CYS GLY ASN ILE CYS HIS ILE ASP LEU ARG TYR SEQRES 20 A 281 CYS LYS GLN VAL THR LYS GLU GLY CYS GLU GLN PHE ILE SEQRES 21 A 281 ALA GLU MSE SER VAL SER VAL GLN PHE GLY GLN VAL GLU SEQRES 22 A 281 GLU LYS LEU LEU GLN LYS LEU SER SEQRES 1 B 162 PRO SER ILE LYS LEU GLN SER SER ASP GLY GLU ILE PHE SEQRES 2 B 162 GLU VAL ASP VAL GLU ILE ALA LYS GLN SER VAL THR ILE SEQRES 3 B 162 LYS THR MSE LEU GLU ASP LEU GLY MSE ASP ASP GLU GLY SEQRES 4 B 162 ASP ASP ASP PRO VAL PRO LEU PRO ASN VAL ASN ALA ALA SEQRES 5 B 162 ILE LEU LYS LYS VAL ILE GLN TRP CYS THR HIS HIS LYS SEQRES 6 B 162 ASP ASP PRO PRO PRO PRO GLU ASP ASP GLU ASN LYS GLU SEQRES 7 B 162 LYS ARG THR ASP ASP ILE PRO VAL TRP ASP GLN GLU PHE SEQRES 8 B 162 LEU LYS VAL ASP GLN GLY THR LEU PHE GLU LEU ILE LEU SEQRES 9 B 162 ALA ALA ASN TYR LEU ASP ILE LYS GLY LEU LEU ASP VAL SEQRES 10 B 162 THR CYS LYS THR VAL ALA ASN MSE ILE LYS GLY LYS THR SEQRES 11 B 162 PRO GLU GLU ILE ARG LYS THR PHE ASN ILE LYS ASN ASP SEQRES 12 B 162 PHE THR GLU GLU GLU GLU ALA GLN VAL ARG LYS GLU ASN SEQRES 13 B 162 GLN TRP CYS GLU GLU LYS SEQRES 1 C 109 GLY THR ARG LEU PRO PHE SER SER PHE ASP HIS SER LYS SEQRES 2 C 109 ALA HIS TYR TYR ARG TYR ASP GLU GLN LEU ASN LEU CYS SEQRES 3 C 109 LEU GLU ARG LEU SER SER GLY LYS ASP LYS ASN LYS SER SEQRES 4 C 109 VAL LEU GLN ASN LYS TYR VAL ARG CYS SER VAL ARG ALA SEQRES 5 C 109 GLU VAL ARG HIS LEU ARG ARG VAL LEU CYS HIS ARG LEU SEQRES 6 C 109 MSE LEU ASN PRO GLN HIS VAL GLN LEU LEU PHE ASP ASN SEQRES 7 C 109 GLU VAL LEU PRO ASP HIS MSE THR MSE LYS GLN ILE TRP SEQRES 8 C 109 LEU SER ARG TRP PHE GLY LYS PRO SER PRO LEU LEU LEU SEQRES 9 C 109 GLN TYR SER VAL LYS SEQRES 1 D 122 MSE GLU THR ARG ASP ASP PHE MSE PHE GLU LEU SER ASP SEQRES 2 D 122 LYS PRO LEU LEU PRO CYS TYR ASN LEU GLN VAL SER VAL SEQRES 3 D 122 SER ARG GLY PRO CYS ASN TRP PHE LEU PHE SER ASP VAL SEQRES 4 D 122 LEU LYS ARG LEU LYS LEU SER SER ARG ILE PHE GLN ALA SEQRES 5 D 122 ARG PHE PRO HIS PHE GLU ILE THR THR MSE PRO LYS ALA SEQRES 6 D 122 GLU PHE TYR ARG GLN VAL ALA SER SER GLN LEU LEU THR SEQRES 7 D 122 PRO ALA GLU ARG PRO GLY GLY LEU ASP ASP ARG SER PRO SEQRES 8 D 122 PRO GLY SER SER GLU THR VAL GLU LEU VAL ARG TYR GLU SEQRES 9 D 122 PRO ASP LEU LEU ARG LEU LEU GLY SER GLU VAL GLU PHE SEQRES 10 D 122 GLN SER CYS ASN SER MODRES 5JH5 MSE A 1065 MET MODIFIED RESIDUE MODRES 5JH5 MSE A 1071 MET MODIFIED RESIDUE MODRES 5JH5 MSE A 1086 MET MODIFIED RESIDUE MODRES 5JH5 MSE A 1117 MET MODIFIED RESIDUE MODRES 5JH5 MSE A 1191 MET MODIFIED RESIDUE MODRES 5JH5 MSE A 1237 MET MODIFIED RESIDUE MODRES 5JH5 MSE A 1318 MET MODIFIED RESIDUE MODRES 5JH5 MSE B 30 MET MODIFIED RESIDUE MODRES 5JH5 MSE B 36 MET MODIFIED RESIDUE MODRES 5JH5 MSE B 126 MET MODIFIED RESIDUE MODRES 5JH5 MSE C 212 MET MODIFIED RESIDUE MODRES 5JH5 MSE C 231 MET MODIFIED RESIDUE MODRES 5JH5 MSE C 233 MET MODIFIED RESIDUE MODRES 5JH5 MSE D 1597 MET MODIFIED RESIDUE MODRES 5JH5 MSE D 1651 MET MODIFIED RESIDUE HET MSE A1065 8 HET MSE A1071 8 HET MSE A1086 8 HET MSE A1117 8 HET MSE A1191 8 HET MSE A1237 8 HET MSE A1318 8 HET MSE B 30 8 HET MSE B 36 8 HET MSE B 126 8 HET MSE C 212 8 HET MSE C 231 8 HET MSE C 233 8 HET MSE D1597 8 HET MSE D1651 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 5 HOH *64(H2 O) HELIX 1 AA1 HIS A 1066 SER A 1075 1 10 HELIX 2 AA2 SER A 1078 ARG A 1087 1 10 HELIX 3 AA3 THR A 1091 CYS A 1096 1 6 HELIX 4 AA4 ASP A 1098 TRP A 1102 5 5 HELIX 5 AA5 THR A 1114 GLN A 1125 1 12 HELIX 6 AA6 SER A 1137 LEU A 1148 1 12 HELIX 7 AA7 SER A 1160 SER A 1165 1 6 HELIX 8 AA8 ALA A 1166 SER A 1169 5 4 HELIX 9 AA9 LYS A 1187 SER A 1196 1 10 HELIX 10 AB1 THR A 1226 MSE A 1237 1 12 HELIX 11 AB2 THR A 1252 THR A 1260 1 9 HELIX 12 AB3 THR A 1264 LEU A 1270 1 7 HELIX 13 AB4 ASP A 1283 LYS A 1290 1 8 HELIX 14 AB5 THR A 1307 SER A 1319 1 13 HELIX 15 AB6 VAL B 18 LYS B 22 1 5 HELIX 16 AB7 SER B 24 LEU B 34 1 11 HELIX 17 AB8 ASN B 51 HIS B 65 1 15 HELIX 18 AB9 PRO B 86 LEU B 93 1 8 HELIX 19 AC1 ASP B 96 ASP B 111 1 16 HELIX 20 AC2 ILE B 112 MSE B 126 1 15 HELIX 21 AC3 THR B 131 ASN B 140 1 10 HELIX 22 AC4 THR B 146 ASN B 157 1 12 HELIX 23 AC5 TYR C 162 ASP C 166 5 5 HELIX 24 AC6 GLU C 199 MSE C 212 1 14 HELIX 25 AC7 ASN C 214 GLN C 216 5 3 HELIX 26 AC8 THR C 232 TRP C 241 1 10 HELIX 27 AC9 PHE D 1625 LYS D 1633 1 9 HELIX 28 AD1 SER D 1635 PHE D 1643 1 9 HELIX 29 AD2 LYS D 1653 SER D 1662 1 10 HELIX 30 AD3 GLU D 1693 LEU D 1700 1 8 SHEET 1 AA110 ARG A1104 ASP A1106 0 SHEET 2 AA110 SER A1128 ASP A1130 1 O SER A1128 N ILE A1105 SHEET 3 AA110 ASP A1153 VAL A1155 1 O VAL A1155 N LEU A1129 SHEET 4 AA110 THR A1177 ASP A1179 1 O THR A1177 N LEU A1154 SHEET 5 AA110 GLU A1217 ARG A1219 1 O GLU A1217 N LEU A1178 SHEET 6 AA110 LYS A1242 HIS A1244 1 O LYS A1242 N LEU A1218 SHEET 7 AA110 GLU A1272 ASN A1274 1 O GLU A1272 N LEU A1243 SHEET 8 AA110 HIS A1297 ASP A1299 1 O ASP A1299 N ILE A1273 SHEET 9 AA110 LEU A1331 LYS A1334 -1 O LEU A1332 N ILE A1298 SHEET 10 AA110 PHE A1324 GLY A1325 -1 N GLY A1325 O GLN A1333 SHEET 1 AA2 3 ILE B 13 ASP B 17 0 SHEET 2 AA2 3 SER B 3 GLN B 7 -1 N LEU B 6 O PHE B 14 SHEET 3 AA2 3 VAL B 45 PRO B 46 1 O VAL B 45 N LYS B 5 SHEET 1 AA3 7 GLU C 225 VAL C 226 0 SHEET 2 AA3 7 VAL C 218 PHE C 222 -1 N PHE C 222 O GLU C 225 SHEET 3 AA3 7 LEU C 248 VAL C 254 -1 O GLN C 251 N LEU C 221 SHEET 4 AA3 7 GLN C 168 ARG C 175 1 N CYS C 172 O LEU C 248 SHEET 5 AA3 7 LYS C 190 SER C 195 -1 O VAL C 192 N LEU C 171 SHEET 6 AA3 7 PHE D1596 SER D1601 -1 O SER D1601 N TYR C 191 SHEET 7 AA3 7 GLU D1703 GLN D1707 -1 O GLU D1705 N PHE D1598 SHEET 1 AA4 4 CYS D1608 LEU D1611 0 SHEET 2 AA4 4 CYS D1620 LEU D1624 -1 O CYS D1620 N LEU D1611 SHEET 3 AA4 4 THR D1686 ARG D1691 -1 O VAL D1690 N PHE D1623 SHEET 4 AA4 4 ILE D1648 PRO D1652 -1 N THR D1649 O LEU D1689 LINK C MSE A1065 N HIS A1066 1555 1555 1.33 LINK C TRP A1070 N MSE A1071 1555 1555 1.33 LINK C MSE A1071 N ALA A1072 1555 1555 1.33 LINK C CYS A1085 N MSE A1086 1555 1555 1.33 LINK C MSE A1086 N ARG A1087 1555 1555 1.33 LINK C LEU A1116 N MSE A1117 1555 1555 1.33 LINK C MSE A1117 N LEU A1118 1555 1555 1.34 LINK C GLN A1190 N MSE A1191 1555 1555 1.33 LINK C MSE A1191 N ARG A1192 1555 1555 1.33 LINK C HIS A1236 N MSE A1237 1555 1555 1.32 LINK C MSE A1237 N PRO A1238 1555 1555 1.33 LINK C GLU A1317 N MSE A1318 1555 1555 1.33 LINK C MSE A1318 N SER A1319 1555 1555 1.34 LINK C THR B 29 N MSE B 30 1555 1555 1.33 LINK C MSE B 30 N LEU B 31 1555 1555 1.34 LINK C GLY B 35 N MSE B 36 1555 1555 1.33 LINK C ASN B 125 N MSE B 126 1555 1555 1.33 LINK C MSE B 126 N ILE B 127 1555 1555 1.33 LINK C LEU C 211 N MSE C 212 1555 1555 1.33 LINK C MSE C 212 N LEU C 213 1555 1555 1.33 LINK C HIS C 230 N MSE C 231 1555 1555 1.33 LINK C MSE C 231 N THR C 232 1555 1555 1.33 LINK C THR C 232 N MSE C 233 1555 1555 1.33 LINK C MSE C 233 N LYS C 234 1555 1555 1.34 LINK C PHE D1596 N MSE D1597 1555 1555 1.33 LINK C MSE D1597 N PHE D1598 1555 1555 1.33 LINK C THR D1650 N MSE D1651 1555 1555 1.33 LINK C MSE D1651 N PRO D1652 1555 1555 1.33 CISPEP 1 SER C 246 PRO C 247 0 -0.48 CRYST1 70.049 73.796 123.014 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014276 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013551 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008129 0.00000 HETATM 1 N MSE A1065 10.038 1.672 23.519 1.00 83.85 N HETATM 2 CA MSE A1065 9.484 2.386 24.654 1.00 86.76 C HETATM 3 C MSE A1065 8.298 1.640 25.193 1.00 87.65 C HETATM 4 O MSE A1065 7.200 1.723 24.607 1.00 91.89 O HETATM 5 CB MSE A1065 9.047 3.786 24.231 1.00 83.92 C HETATM 6 CG MSE A1065 10.231 4.663 23.838 1.00 91.75 C HETATM 7 SE MSE A1065 10.005 6.490 24.544 1.00127.76 SE HETATM 8 CE MSE A1065 11.014 7.472 23.173 1.00100.82 C