HEADER HYDROLASE4/HYDROLASE INHIBITOR 21-APR-16 5JI6 TITLE POTENT, REVERSIBLE METAP2 INHIBITORS VIA FBDD COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 87-455; COMPND 5 SYNONYM: METAP 2,INITIATION FACTOR 2-ASSOCIATED 67 KDA GLYCOPROTEIN, COMPND 6 P67EIF2,PEPTIDASE M; COMPND 7 EC: 3.4.11.18; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METAP2, MNPEP, P67EIF2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9 KEYWDS HYDROLASE, PEPTIDASE, METAL ION BINDING, PROTEOLYSIS, HYDROLASE4- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.R.DOUGAN,J.D.LAWSON REVDAT 3 22-NOV-17 5JI6 1 JRNL REMARK REVDAT 2 15-JUN-16 5JI6 1 JRNL REVDAT 1 25-MAY-16 5JI6 0 JRNL AUTH Z.CHERUVALLATH,M.TANG,C.MCBRIDE,M.KOMANDLA,J.MIURA,T.TON-NU, JRNL AUTH 2 P.ERIKSON,J.FENG,P.FARRELL,J.D.LAWSON,D.VANDERPOOL,Y.WU, JRNL AUTH 3 D.R.DOUGAN,A.PLONOWSKI,C.HOLUB,C.LARSON JRNL TITL DISCOVERY OF POTENT, REVERSIBLE METAP2 INHIBITORS VIA JRNL TITL 2 FRAGMENT BASED DRUG DISCOVERY AND STRUCTURE BASED DRUG JRNL TITL 3 DESIGN-PART 1. JRNL REF BIOORG.MED.CHEM.LETT. V. 26 2774 2016 JRNL REFN ESSN 1464-3405 JRNL PMID 27155900 JRNL DOI 10.1016/J.BMCL.2016.04.073 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1250 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1660 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2890 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.87000 REMARK 3 B22 (A**2) : -3.85000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.023 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2985 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4048 ; 1.178 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 5.842 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;34.139 ;24.412 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 516 ;14.463 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;12.130 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2272 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8932 12.2014 1.9128 REMARK 3 T TENSOR REMARK 3 T11: 0.5925 T22: 0.1259 REMARK 3 T33: 0.2890 T12: 0.0368 REMARK 3 T13: -0.1175 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 3.0571 L22: 3.3868 REMARK 3 L33: 1.5589 L12: -0.2261 REMARK 3 L13: -0.0875 L23: -0.5191 REMARK 3 S TENSOR REMARK 3 S11: -0.0817 S12: -0.2263 S13: -0.6708 REMARK 3 S21: -1.2493 S22: -0.0729 S23: 0.5926 REMARK 3 S31: 0.6087 S32: 0.0861 S33: 0.1545 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5779 17.0729 2.7056 REMARK 3 T TENSOR REMARK 3 T11: 0.3422 T22: 0.1259 REMARK 3 T33: 0.1782 T12: 0.0041 REMARK 3 T13: -0.1938 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 0.3480 L22: 3.2136 REMARK 3 L33: 1.1293 L12: 0.4219 REMARK 3 L13: -0.6110 L23: -0.5074 REMARK 3 S TENSOR REMARK 3 S11: -0.1908 S12: 0.0712 S13: 0.0376 REMARK 3 S21: -0.8258 S22: 0.2144 S23: 0.6444 REMARK 3 S31: 0.3870 S32: -0.0588 S33: -0.0236 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 190 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6576 28.6705 14.0506 REMARK 3 T TENSOR REMARK 3 T11: 0.0190 T22: 0.1004 REMARK 3 T33: 0.0237 T12: 0.0016 REMARK 3 T13: 0.0047 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.5219 L22: 3.7030 REMARK 3 L33: 1.6098 L12: -0.0472 REMARK 3 L13: 0.3887 L23: -0.6104 REMARK 3 S TENSOR REMARK 3 S11: 0.0868 S12: 0.0150 S13: 0.0203 REMARK 3 S21: -0.1043 S22: -0.0331 S23: 0.0943 REMARK 3 S31: 0.0305 S32: 0.0983 S33: -0.0538 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 309 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9450 13.2437 23.4880 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1484 REMARK 3 T33: 0.3375 T12: -0.0697 REMARK 3 T13: 0.0541 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 0.6491 L22: 3.3976 REMARK 3 L33: 1.9017 L12: -0.1049 REMARK 3 L13: 0.2964 L23: -0.3300 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: -0.1275 S13: -0.1338 REMARK 3 S21: 0.2768 S22: 0.0984 S23: 0.9976 REMARK 3 S31: 0.1988 S32: -0.3178 S33: -0.0928 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 310 A 374 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8850 21.2816 22.8952 REMARK 3 T TENSOR REMARK 3 T11: 0.1297 T22: 0.1677 REMARK 3 T33: 0.4614 T12: -0.0269 REMARK 3 T13: 0.1364 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 0.6637 L22: 2.8782 REMARK 3 L33: 3.5141 L12: -0.1030 REMARK 3 L13: 0.9769 L23: -0.9389 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: -0.1641 S13: -0.0165 REMARK 3 S21: 0.4061 S22: 0.0992 S23: 1.0949 REMARK 3 S31: 0.0437 S32: -0.5316 S33: -0.1256 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 375 A 394 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9571 41.4909 15.0949 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.1381 REMARK 3 T33: 0.3054 T12: 0.0322 REMARK 3 T13: 0.0711 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.0743 L22: 3.7707 REMARK 3 L33: 2.7664 L12: -0.4943 REMARK 3 L13: 0.0337 L23: -1.2870 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: -0.0013 S13: -0.1367 REMARK 3 S21: 0.3149 S22: 0.1928 S23: 0.9857 REMARK 3 S31: -0.3254 S32: -0.2826 S33: -0.1665 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 395 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4886 47.9506 5.7046 REMARK 3 T TENSOR REMARK 3 T11: 0.1874 T22: 0.1212 REMARK 3 T33: 0.2363 T12: 0.0216 REMARK 3 T13: 0.0344 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.2176 L22: 5.0454 REMARK 3 L33: 2.3898 L12: -1.0090 REMARK 3 L13: 0.0024 L23: -0.4214 REMARK 3 S TENSOR REMARK 3 S11: 0.1108 S12: -0.0202 S13: -0.0761 REMARK 3 S21: -0.2428 S22: 0.1304 S23: 0.6033 REMARK 3 S31: -0.3473 S32: -0.1701 S33: -0.2413 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 415 A 478 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2194 31.6639 14.8877 REMARK 3 T TENSOR REMARK 3 T11: 0.0389 T22: 0.0938 REMARK 3 T33: 0.1402 T12: -0.0104 REMARK 3 T13: 0.0281 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.3145 L22: 3.2962 REMARK 3 L33: 1.4970 L12: -0.2915 REMARK 3 L13: 0.2382 L23: -0.7249 REMARK 3 S TENSOR REMARK 3 S11: 0.0962 S12: -0.0205 S13: -0.0013 REMARK 3 S21: 0.0461 S22: 0.0233 S23: 0.6264 REMARK 3 S31: -0.0116 S32: -0.1259 S33: -0.1194 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5JI6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XFIT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24715 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.91600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24.% PEG MME 2000, 0.05M MES PH 5.9, REMARK 280 0.0175M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.73450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.73450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.48100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.05000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.48100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.05000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.73450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.48100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.05000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.73450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.48100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.05000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 349 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 117 -14.16 -149.94 REMARK 500 CYS A 223 39.14 -143.46 REMARK 500 ASN A 226 -114.86 59.68 REMARK 500 ASP A 294 -0.89 74.51 REMARK 500 MET A 378 -178.93 69.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 ASP A 251 OD2 57.3 REMARK 620 3 ASP A 262 OD2 88.3 145.3 REMARK 620 4 GLU A 459 OE2 102.7 98.5 84.2 REMARK 620 5 HOH A 605 O 84.7 87.3 94.0 172.3 REMARK 620 6 HOH A 620 O 138.6 82.5 132.1 91.8 83.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 262 OD1 REMARK 620 2 HIS A 331 NE2 96.1 REMARK 620 3 GLU A 364 OE1 159.7 81.8 REMARK 620 4 GLU A 459 OE1 75.7 109.0 85.8 REMARK 620 5 6KN A 504 N15 95.4 80.9 104.2 167.1 REMARK 620 6 HOH A 620 O 101.1 158.4 86.5 88.0 84.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6KN A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JHU RELATED DB: PDB REMARK 900 RELATED ID: 5JFR RELATED DB: PDB DBREF 5JI6 A 110 478 UNP P50579 MAP2_HUMAN 87 455 SEQRES 1 A 369 LYS VAL GLN THR ASP PRO PRO SER VAL PRO ILE CYS ASP SEQRES 2 A 369 LEU TYR PRO ASN GLY VAL PHE PRO LYS GLY GLN GLU CYS SEQRES 3 A 369 GLU TYR PRO PRO THR GLN ASP GLY ARG THR ALA ALA TRP SEQRES 4 A 369 ARG THR THR SER GLU GLU LYS LYS ALA LEU ASP GLN ALA SEQRES 5 A 369 SER GLU GLU ILE TRP ASN ASP PHE ARG GLU ALA ALA GLU SEQRES 6 A 369 ALA HIS ARG GLN VAL ARG LYS TYR VAL MET SER TRP ILE SEQRES 7 A 369 LYS PRO GLY MET THR MET ILE GLU ILE CYS GLU LYS LEU SEQRES 8 A 369 GLU ASP CYS SER ARG LYS LEU ILE LYS GLU ASN GLY LEU SEQRES 9 A 369 ASN ALA GLY LEU ALA PHE PRO THR GLY CYS SER LEU ASN SEQRES 10 A 369 ASN CYS ALA ALA HIS TYR THR PRO ASN ALA GLY ASP THR SEQRES 11 A 369 THR VAL LEU GLN TYR ASP ASP ILE CYS LYS ILE ASP PHE SEQRES 12 A 369 GLY THR HIS ILE SER GLY ARG ILE ILE ASP CYS ALA PHE SEQRES 13 A 369 THR VAL THR PHE ASN PRO LYS TYR ASP THR LEU LEU LYS SEQRES 14 A 369 ALA VAL LYS ASP ALA THR ASN THR GLY ILE LYS CYS ALA SEQRES 15 A 369 GLY ILE ASP VAL ARG LEU CYS ASP VAL GLY GLU ALA ILE SEQRES 16 A 369 GLN GLU VAL MET GLU SER TYR GLU VAL GLU ILE ASP GLY SEQRES 17 A 369 LYS THR TYR GLN VAL LYS PRO ILE ARG ASN LEU ASN GLY SEQRES 18 A 369 HIS SER ILE GLY GLN TYR ARG ILE HIS ALA GLY LYS THR SEQRES 19 A 369 VAL PRO ILE VAL LYS GLY GLY GLU ALA THR ARG MET GLU SEQRES 20 A 369 GLU GLY GLU VAL TYR ALA ILE GLU THR PHE GLY SER THR SEQRES 21 A 369 GLY LYS GLY VAL VAL HIS ASP ASP MET GLU CYS SER HIS SEQRES 22 A 369 TYR MET LYS ASN PHE ASP VAL GLY HIS VAL PRO ILE ARG SEQRES 23 A 369 LEU PRO ARG THR LYS HIS LEU LEU ASN VAL ILE ASN GLU SEQRES 24 A 369 ASN PHE GLY THR LEU ALA PHE CYS ARG ARG TRP LEU ASP SEQRES 25 A 369 ARG LEU GLY GLU SER LYS TYR LEU MET ALA LEU LYS ASN SEQRES 26 A 369 LEU CYS ASP LEU GLY ILE VAL ASP PRO TYR PRO PRO LEU SEQRES 27 A 369 CYS ASP ILE LYS GLY SER TYR THR ALA GLN PHE GLU HIS SEQRES 28 A 369 THR ILE LEU LEU ARG PRO THR CYS LYS GLU VAL VAL SER SEQRES 29 A 369 ARG GLY ASP ASP TYR HET MN A 501 1 HET MN A 502 1 HET SO4 A 503 5 HET 6KN A 504 20 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM 6KN 4-(3-METHYLPYRIDIN-4-YL)-6-(TRIFLUOROMETHYL)-1H- HETNAM 2 6KN INDAZOLE FORMUL 2 MN 2(MN 2+) FORMUL 4 SO4 O4 S 2- FORMUL 5 6KN C14 H10 F3 N3 FORMUL 6 HOH *132(H2 O) HELIX 1 AA1 PRO A 119 TYR A 124 1 6 HELIX 2 AA2 ALA A 147 SER A 152 1 6 HELIX 3 AA3 SER A 152 SER A 162 1 11 HELIX 4 AA4 SER A 162 ILE A 187 1 26 HELIX 5 AA5 THR A 192 LYS A 209 1 18 HELIX 6 AA6 ASN A 211 LEU A 213 5 3 HELIX 7 AA7 ASN A 270 LYS A 272 5 3 HELIX 8 AA8 TYR A 273 ALA A 291 1 19 HELIX 9 AA9 ARG A 296 GLU A 309 1 14 HELIX 10 AB1 LEU A 396 PHE A 410 1 15 HELIX 11 AB2 ARG A 417 LEU A 423 1 7 HELIX 12 AB3 TYR A 428 LEU A 438 1 11 SHEET 1 AA1 5 GLN A 133 CYS A 135 0 SHEET 2 AA1 5 LYS A 469 VAL A 471 -1 O LYS A 469 N CYS A 135 SHEET 3 AA1 5 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 AA1 5 VAL A 360 SER A 368 -1 N TYR A 361 O ILE A 462 SHEET 5 AA1 5 LYS A 323 PRO A 324 -1 N LYS A 323 O SER A 368 SHEET 1 AA2 6 GLN A 133 CYS A 135 0 SHEET 2 AA2 6 LYS A 469 VAL A 471 -1 O LYS A 469 N CYS A 135 SHEET 3 AA2 6 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 AA2 6 VAL A 360 SER A 368 -1 N TYR A 361 O ILE A 462 SHEET 5 AA2 6 GLY A 330 SER A 332 -1 N HIS A 331 O ALA A 362 SHEET 6 AA2 6 THR A 343 VAL A 344 -1 O VAL A 344 N GLY A 330 SHEET 1 AA3 3 ALA A 215 LEU A 225 0 SHEET 2 AA3 3 CYS A 248 ILE A 256 -1 O ASP A 251 N GLY A 222 SHEET 3 AA3 3 ARG A 259 VAL A 267 -1 O VAL A 267 N CYS A 248 SHEET 1 AA4 3 CYS A 228 ALA A 230 0 SHEET 2 AA4 3 LEU A 447 CYS A 448 -1 O LEU A 447 N ALA A 229 SHEET 3 AA4 3 HIS A 375 ASP A 376 -1 N HIS A 375 O CYS A 448 SHEET 1 AA5 2 GLU A 312 ILE A 315 0 SHEET 2 AA5 2 LYS A 318 GLN A 321 -1 O TYR A 320 N VAL A 313 SHEET 1 AA6 3 PHE A 415 CYS A 416 0 SHEET 2 AA6 3 HIS A 382 LYS A 385 -1 N TYR A 383 O PHE A 415 SHEET 3 AA6 3 VAL A 441 TYR A 444 -1 O TYR A 444 N HIS A 382 SSBOND 1 CYS A 228 CYS A 448 1555 1555 2.07 LINK OD1 ASP A 251 MN MN A 501 1555 1555 2.30 LINK OD2 ASP A 251 MN MN A 501 1555 1555 2.20 LINK OD1 ASP A 262 MN MN A 502 1555 1555 2.01 LINK OD2 ASP A 262 MN MN A 501 1555 1555 1.87 LINK NE2 HIS A 331 MN MN A 502 1555 1555 2.18 LINK OE1 GLU A 364 MN MN A 502 1555 1555 2.17 LINK OE1 GLU A 459 MN MN A 502 1555 1555 2.13 LINK OE2 GLU A 459 MN MN A 501 1555 1555 1.99 LINK MN MN A 501 O HOH A 605 1555 1555 2.21 LINK MN MN A 501 O HOH A 620 1555 1555 1.94 LINK MN MN A 502 N15 6KN A 504 1555 1555 2.15 LINK MN MN A 502 O HOH A 620 1555 1555 2.34 CISPEP 1 ASP A 114 PRO A 115 0 -1.03 SITE 1 AC1 6 ASP A 251 ASP A 262 GLU A 459 MN A 502 SITE 2 AC1 6 HOH A 605 HOH A 620 SITE 1 AC2 7 ASP A 262 HIS A 331 GLU A 364 GLU A 459 SITE 2 AC2 7 MN A 501 6KN A 504 HOH A 620 SITE 1 AC3 2 HIS A 391 HOH A 668 SITE 1 AC4 13 HIS A 231 ASP A 262 HIS A 331 ILE A 338 SITE 2 AC4 13 HIS A 339 GLU A 364 HIS A 382 MET A 384 SITE 3 AC4 13 ALA A 414 TYR A 444 MN A 502 HOH A 605 SITE 4 AC4 13 HOH A 620 CRYST1 88.962 100.100 99.469 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011241 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010053 0.00000