data_5JIG # _entry.id 5JIG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5JIG WWPDB D_1000220626 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5JIG _pdbx_database_status.recvd_initial_deposition_date 2016-04-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Groll, M.' 1 'Stingele, J.' 2 'Boulton, S.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Mol.Cell _citation.journal_id_ASTM MOCEFL _citation.journal_id_CSD 2168 _citation.journal_id_ISSN 1097-2765 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 64 _citation.language ? _citation.page_first 688 _citation.page_last 703 _citation.title 'Mechanism and Regulation of DNA-Protein Crosslink Repair by the DNA-Dependent Metalloprotease SPRTN.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.molcel.2016.09.031 _citation.pdbx_database_id_PubMed 27871365 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Stingele, J.' 1 primary 'Bellelli, R.' 2 primary 'Alte, F.' 3 primary 'Hewitt, G.' 4 primary 'Sarek, G.' 5 primary 'Maslen, S.L.' 6 primary 'Tsutakawa, S.E.' 7 primary 'Borg, A.' 8 primary 'Kjr, S.' 9 primary 'Tainer, J.A.' 10 primary 'Skehel, J.M.' 11 primary 'Groll, M.' 12 primary 'Boulton, S.J.' 13 # _cell.entry_id 5JIG _cell.length_a 40.300 _cell.length_b 41.300 _cell.length_c 68.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JIG _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c' 14995.761 1 3.4.24.- ? ? 'Used construct was a truncation mutant of SPCC1442.07c' 2 non-polymer nat 'NICKEL (II) ION' 58.693 1 ? ? ? ? 3 non-polymer syn 'OXYGEN MOLECULE' 31.999 1 ? ? ? ? 4 water nat water 18.015 178 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DNA-dependent Metalloprotease SPRTN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSIYTFNELVVLDYPHKDRALRYLERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSKTLGLNHNQGAHIELRLRTD RYDGFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEADAADL ; _entity_poly.pdbx_seq_one_letter_code_can ;GSIYTFNELVVLDYPHKDRALRYLERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSKTLGLNHNQGAHIELRLRTD RYDGFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEADAADL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ILE n 1 4 TYR n 1 5 THR n 1 6 PHE n 1 7 ASN n 1 8 GLU n 1 9 LEU n 1 10 VAL n 1 11 VAL n 1 12 LEU n 1 13 ASP n 1 14 TYR n 1 15 PRO n 1 16 HIS n 1 17 LYS n 1 18 ASP n 1 19 ARG n 1 20 ALA n 1 21 LEU n 1 22 ARG n 1 23 TYR n 1 24 LEU n 1 25 GLU n 1 26 ARG n 1 27 LEU n 1 28 ARG n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 GLY n 1 33 ILE n 1 34 LYS n 1 35 LYS n 1 36 ILE n 1 37 MET n 1 38 ASP n 1 39 SER n 1 40 HIS n 1 41 ARG n 1 42 TRP n 1 43 THR n 1 44 VAL n 1 45 PRO n 1 46 LEU n 1 47 LEU n 1 48 SER n 1 49 GLU n 1 50 MET n 1 51 ASP n 1 52 PRO n 1 53 ALA n 1 54 GLU n 1 55 HIS n 1 56 THR n 1 57 ARG n 1 58 HIS n 1 59 ASP n 1 60 SER n 1 61 LYS n 1 62 THR n 1 63 LEU n 1 64 GLY n 1 65 LEU n 1 66 ASN n 1 67 HIS n 1 68 ASN n 1 69 GLN n 1 70 GLY n 1 71 ALA n 1 72 HIS n 1 73 ILE n 1 74 GLU n 1 75 LEU n 1 76 ARG n 1 77 LEU n 1 78 ARG n 1 79 THR n 1 80 ASP n 1 81 ARG n 1 82 TYR n 1 83 ASP n 1 84 GLY n 1 85 PHE n 1 86 ARG n 1 87 ASP n 1 88 TYR n 1 89 LYS n 1 90 THR n 1 91 VAL n 1 92 LYS n 1 93 SER n 1 94 THR n 1 95 LEU n 1 96 ILE n 1 97 HIS n 1 98 GLU n 1 99 LEU n 1 100 THR n 1 101 HIS n 1 102 ASN n 1 103 VAL n 1 104 HIS n 1 105 GLY n 1 106 GLU n 1 107 HIS n 1 108 ASP n 1 109 SER n 1 110 SER n 1 111 PHE n 1 112 TRP n 1 113 GLU n 1 114 LEU n 1 115 PHE n 1 116 ARG n 1 117 GLN n 1 118 LEU n 1 119 THR n 1 120 LYS n 1 121 GLU n 1 122 ALA n 1 123 ASP n 1 124 ALA n 1 125 ALA n 1 126 ASP n 1 127 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 127 _entity_src_gen.gene_src_common_name 'Fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SPCC1442.07c _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces pombe (strain 972 / ATCC 24843)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 284812 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pRSETA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YQ77_SCHPO _struct_ref.pdbx_db_accession O94580 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ASIYTFNELVVLDYPHKDRALRYLERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSKTLGLNHNQGAHIELRLRTD RYDGFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEADAADL ; _struct_ref.pdbx_align_begin 106 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5JIG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 127 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O94580 _struct_ref_seq.db_align_beg 106 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 232 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 127 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5JIG _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O94580 _struct_ref_seq_dif.db_mon_id ALA _struct_ref_seq_dif.pdbx_seq_db_seq_num 106 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 OXY non-polymer . 'OXYGEN MOLECULE' ? O2 31.999 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5JIG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM Tris/HCl, 20% PEG 1000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2009-09-23 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'LN2 cooled fixed-exit. Si(111) monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.8 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5JIG _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.0 _reflns.d_resolution_low 30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 61720 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.8 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 21.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.0 _reflns_shell.d_res_low 1.1 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 4.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.399 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5JIG _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 58634 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 1.00 _refine.ls_percent_reflns_obs 98.71 _refine.ls_R_factor_obs 0.14265 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.14136 _refine.ls_R_factor_R_free 0.16724 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 3086 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.959 _refine.B_iso_mean 11.727 _refine.aniso_B[1][1] -0.19 _refine.aniso_B[2][2] -0.62 _refine.aniso_B[3][3] 0.81 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.023 _refine.pdbx_overall_ESU_R_Free 0.024 _refine.overall_SU_ML 0.015 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.630 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 982 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 178 _refine_hist.number_atoms_total 1163 _refine_hist.d_res_high 1.00 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.019 ? 1034 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 993 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.913 1.944 ? 1403 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.905 3.000 ? 2249 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.312 5.000 ? 125 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.970 22.931 ? 58 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 10.587 15.000 ? 184 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.133 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.124 0.200 ? 152 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.020 ? 1165 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 258 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.070 0.842 ? 480 'X-RAY DIFFRACTION' ? r_mcbond_other 1.061 0.838 ? 479 'X-RAY DIFFRACTION' ? r_mcangle_it 1.321 1.265 ? 599 'X-RAY DIFFRACTION' ? r_mcangle_other 1.331 1.268 ? 600 'X-RAY DIFFRACTION' ? r_scbond_it 1.966 1.122 ? 554 'X-RAY DIFFRACTION' ? r_scbond_other 1.966 1.123 ? 554 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 2.142 1.598 ? 800 'X-RAY DIFFRACTION' ? r_long_range_B_refined 2.943 9.059 ? 1341 'X-RAY DIFFRACTION' ? r_long_range_B_other 2.616 8.122 ? 1253 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 5.732 3.000 ? 2027 'X-RAY DIFFRACTION' ? r_sphericity_free 28.881 5.000 ? 32 'X-RAY DIFFRACTION' ? r_sphericity_bonded 8.526 5.000 ? 2148 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.000 _refine_ls_shell.d_res_low 1.026 _refine_ls_shell.number_reflns_R_work 4253 _refine_ls_shell.R_factor_R_work 0.169 _refine_ls_shell.percent_reflns_obs 99.51 _refine_ls_shell.R_factor_R_free 0.176 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 223 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5JIG _struct.title 'Crytsal structure of Wss1 from S. pombe' _struct.pdbx_descriptor 'Ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c (E.C.3.4.24.-)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5JIG _struct_keywords.text 'Metalloprotease, DNA-Repair, Endoprotease, Regulation, hydrolase' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 16 ? ASP A 30 ? HIS A 16 ASP A 30 1 ? 15 HELX_P HELX_P2 AA2 ASP A 30 ? ARG A 41 ? ASP A 30 ARG A 41 1 ? 12 HELX_P HELX_P3 AA3 ASP A 87 ? HIS A 101 ? ASP A 87 HIS A 101 1 ? 15 HELX_P HELX_P4 AA4 ASP A 108 ? ASP A 123 ? ASP A 108 ASP A 123 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A HIS 97 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 97 A NI 201 1_555 ? ? ? ? ? ? ? 2.069 ? metalc2 metalc ? ? A HIS 101 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 101 A NI 201 1_555 ? ? ? ? ? ? ? 2.073 ? metalc3 metalc ? ? A HIS 107 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 107 A NI 201 1_555 ? ? ? ? ? ? ? 2.114 ? metalc4 metalc ? ? B NI . NI ? ? ? 1_555 D HOH . O ? ? A NI 201 A HOH 343 1_555 ? ? ? ? ? ? ? 2.174 ? metalc5 metalc ? ? B NI . NI ? ? ? 1_555 C OXY . O1 ? ? A NI 201 A OXY 202 1_555 ? ? ? ? ? ? ? 2.161 ? metalc6 metalc ? ? B NI . NI ? ? ? 1_555 D HOH . O ? ? A NI 201 A HOH 311 1_555 ? ? ? ? ? ? ? 2.135 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 6 ? VAL A 10 ? PHE A 6 VAL A 10 AA1 2 VAL A 44 ? MET A 50 ? VAL A 44 MET A 50 AA1 3 HIS A 72 ? ARG A 76 ? HIS A 72 ARG A 76 AA1 4 GLY A 64 ? HIS A 67 ? GLY A 64 HIS A 67 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 8 ? N GLU A 8 O LEU A 47 ? O LEU A 47 AA1 2 3 N SER A 48 ? N SER A 48 O ILE A 73 ? O ILE A 73 AA1 3 4 O HIS A 72 ? O HIS A 72 N HIS A 67 ? N HIS A 67 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NI 201 ? 6 'binding site for residue NI A 201' AC2 Software A OXY 202 ? 7 'binding site for residue OXY A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 97 ? HIS A 97 . ? 1_555 ? 2 AC1 6 HIS A 101 ? HIS A 101 . ? 1_555 ? 3 AC1 6 HIS A 107 ? HIS A 107 . ? 1_555 ? 4 AC1 6 OXY C . ? OXY A 202 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 311 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 343 . ? 1_555 ? 7 AC2 7 GLY A 64 ? GLY A 64 . ? 1_555 ? 8 AC2 7 HIS A 97 ? HIS A 97 . ? 1_555 ? 9 AC2 7 GLU A 98 ? GLU A 98 . ? 1_555 ? 10 AC2 7 HIS A 101 ? HIS A 101 . ? 1_555 ? 11 AC2 7 NI B . ? NI A 201 . ? 1_555 ? 12 AC2 7 HOH D . ? HOH A 311 . ? 1_555 ? 13 AC2 7 HOH D . ? HOH A 343 . ? 1_555 ? # _atom_sites.entry_id 5JIG _atom_sites.fract_transf_matrix[1][1] 0.024814 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024213 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014599 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NI O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 HIS 16 16 16 HIS HIS A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 MET 37 37 37 MET MET A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 MET 50 50 50 MET MET A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 ALA 53 53 ? ? ? A . n A 1 54 GLU 54 54 ? ? ? A . n A 1 55 HIS 55 55 ? ? ? A . n A 1 56 THR 56 56 ? ? ? A . n A 1 57 ARG 57 57 ? ? ? A . n A 1 58 HIS 58 58 ? ? ? A . n A 1 59 ASP 59 59 ? ? ? A . n A 1 60 SER 60 60 ? ? ? A . n A 1 61 LYS 61 61 ? ? ? A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 HIS 67 67 67 HIS HIS A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 HIS 72 72 72 HIS HIS A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 HIS 97 97 97 HIS HIS A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 HIS 101 101 101 HIS HIS A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 HIS 104 104 104 HIS HIS A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 HIS 107 107 107 HIS HIS A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 TRP 112 112 112 TRP TRP A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 PHE 115 115 115 PHE PHE A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 LYS 120 120 120 LYS LYS A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 LEU 127 127 127 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 201 998 NI NI A . C 3 OXY 1 202 999 OXY OXY A . D 4 HOH 1 301 218 HOH HOH A . D 4 HOH 2 302 128 HOH HOH A . D 4 HOH 3 303 214 HOH HOH A . D 4 HOH 4 304 118 HOH HOH A . D 4 HOH 5 305 126 HOH HOH A . D 4 HOH 6 306 233 HOH HOH A . D 4 HOH 7 307 163 HOH HOH A . D 4 HOH 8 308 186 HOH HOH A . D 4 HOH 9 309 88 HOH HOH A . D 4 HOH 10 310 98 HOH HOH A . D 4 HOH 11 311 221 HOH HOH A . D 4 HOH 12 312 8 HOH HOH A . D 4 HOH 13 313 120 HOH HOH A . D 4 HOH 14 314 123 HOH HOH A . D 4 HOH 15 315 40 HOH HOH A . D 4 HOH 16 316 23 HOH HOH A . D 4 HOH 17 317 13 HOH HOH A . D 4 HOH 18 318 30 HOH HOH A . D 4 HOH 19 319 3 HOH HOH A . D 4 HOH 20 320 134 HOH HOH A . D 4 HOH 21 321 97 HOH HOH A . D 4 HOH 22 322 7 HOH HOH A . D 4 HOH 23 323 105 HOH HOH A . D 4 HOH 24 324 22 HOH HOH A . D 4 HOH 25 325 162 HOH HOH A . D 4 HOH 26 326 198 HOH HOH A . D 4 HOH 27 327 2 HOH HOH A . D 4 HOH 28 328 44 HOH HOH A . D 4 HOH 29 329 138 HOH HOH A . D 4 HOH 30 330 27 HOH HOH A . D 4 HOH 31 331 96 HOH HOH A . D 4 HOH 32 332 106 HOH HOH A . D 4 HOH 33 333 42 HOH HOH A . D 4 HOH 34 334 91 HOH HOH A . D 4 HOH 35 335 33 HOH HOH A . D 4 HOH 36 336 146 HOH HOH A . D 4 HOH 37 337 200 HOH HOH A . D 4 HOH 38 338 14 HOH HOH A . D 4 HOH 39 339 82 HOH HOH A . D 4 HOH 40 340 220 HOH HOH A . D 4 HOH 41 341 25 HOH HOH A . D 4 HOH 42 342 21 HOH HOH A . D 4 HOH 43 343 224 HOH HOH A . D 4 HOH 44 344 206 HOH HOH A . D 4 HOH 45 345 71 HOH HOH A . D 4 HOH 46 346 15 HOH HOH A . D 4 HOH 47 347 89 HOH HOH A . D 4 HOH 48 348 158 HOH HOH A . D 4 HOH 49 349 16 HOH HOH A . D 4 HOH 50 350 219 HOH HOH A . D 4 HOH 51 351 141 HOH HOH A . D 4 HOH 52 352 90 HOH HOH A . D 4 HOH 53 353 57 HOH HOH A . D 4 HOH 54 354 10 HOH HOH A . D 4 HOH 55 355 122 HOH HOH A . D 4 HOH 56 356 20 HOH HOH A . D 4 HOH 57 357 11 HOH HOH A . D 4 HOH 58 358 17 HOH HOH A . D 4 HOH 59 359 18 HOH HOH A . D 4 HOH 60 360 175 HOH HOH A . D 4 HOH 61 361 24 HOH HOH A . D 4 HOH 62 362 32 HOH HOH A . D 4 HOH 63 363 104 HOH HOH A . D 4 HOH 64 364 1 HOH HOH A . D 4 HOH 65 365 41 HOH HOH A . D 4 HOH 66 366 49 HOH HOH A . D 4 HOH 67 367 136 HOH HOH A . D 4 HOH 68 368 135 HOH HOH A . D 4 HOH 69 369 114 HOH HOH A . D 4 HOH 70 370 107 HOH HOH A . D 4 HOH 71 371 46 HOH HOH A . D 4 HOH 72 372 85 HOH HOH A . D 4 HOH 73 373 5 HOH HOH A . D 4 HOH 74 374 94 HOH HOH A . D 4 HOH 75 375 64 HOH HOH A . D 4 HOH 76 376 34 HOH HOH A . D 4 HOH 77 377 12 HOH HOH A . D 4 HOH 78 378 133 HOH HOH A . D 4 HOH 79 379 29 HOH HOH A . D 4 HOH 80 380 56 HOH HOH A . D 4 HOH 81 381 60 HOH HOH A . D 4 HOH 82 382 148 HOH HOH A . D 4 HOH 83 383 48 HOH HOH A . D 4 HOH 84 384 153 HOH HOH A . D 4 HOH 85 385 68 HOH HOH A . D 4 HOH 86 386 47 HOH HOH A . D 4 HOH 87 387 53 HOH HOH A . D 4 HOH 88 388 92 HOH HOH A . D 4 HOH 89 389 165 HOH HOH A . D 4 HOH 90 390 86 HOH HOH A . D 4 HOH 91 391 66 HOH HOH A . D 4 HOH 92 392 116 HOH HOH A . D 4 HOH 93 393 58 HOH HOH A . D 4 HOH 94 394 119 HOH HOH A . D 4 HOH 95 395 59 HOH HOH A . D 4 HOH 96 396 61 HOH HOH A . D 4 HOH 97 397 215 HOH HOH A . D 4 HOH 98 398 150 HOH HOH A . D 4 HOH 99 399 160 HOH HOH A . D 4 HOH 100 400 6 HOH HOH A . D 4 HOH 101 401 179 HOH HOH A . D 4 HOH 102 402 87 HOH HOH A . D 4 HOH 103 403 142 HOH HOH A . D 4 HOH 104 404 19 HOH HOH A . D 4 HOH 105 405 35 HOH HOH A . D 4 HOH 106 406 145 HOH HOH A . D 4 HOH 107 407 28 HOH HOH A . D 4 HOH 108 408 225 HOH HOH A . D 4 HOH 109 409 95 HOH HOH A . D 4 HOH 110 410 72 HOH HOH A . D 4 HOH 111 411 26 HOH HOH A . D 4 HOH 112 412 4 HOH HOH A . D 4 HOH 113 413 159 HOH HOH A . D 4 HOH 114 414 70 HOH HOH A . D 4 HOH 115 415 37 HOH HOH A . D 4 HOH 116 416 111 HOH HOH A . D 4 HOH 117 417 189 HOH HOH A . D 4 HOH 118 418 78 HOH HOH A . D 4 HOH 119 419 124 HOH HOH A . D 4 HOH 120 420 52 HOH HOH A . D 4 HOH 121 421 155 HOH HOH A . D 4 HOH 122 422 9 HOH HOH A . D 4 HOH 123 423 43 HOH HOH A . D 4 HOH 124 424 51 HOH HOH A . D 4 HOH 125 425 69 HOH HOH A . D 4 HOH 126 426 55 HOH HOH A . D 4 HOH 127 427 125 HOH HOH A . D 4 HOH 128 428 130 HOH HOH A . D 4 HOH 129 429 166 HOH HOH A . D 4 HOH 130 430 65 HOH HOH A . D 4 HOH 131 431 36 HOH HOH A . D 4 HOH 132 432 132 HOH HOH A . D 4 HOH 133 433 112 HOH HOH A . D 4 HOH 134 434 67 HOH HOH A . D 4 HOH 135 435 115 HOH HOH A . D 4 HOH 136 436 147 HOH HOH A . D 4 HOH 137 437 127 HOH HOH A . D 4 HOH 138 438 109 HOH HOH A . D 4 HOH 139 439 176 HOH HOH A . D 4 HOH 140 440 121 HOH HOH A . D 4 HOH 141 441 100 HOH HOH A . D 4 HOH 142 442 213 HOH HOH A . D 4 HOH 143 443 167 HOH HOH A . D 4 HOH 144 444 181 HOH HOH A . D 4 HOH 145 445 202 HOH HOH A . D 4 HOH 146 446 83 HOH HOH A . D 4 HOH 147 447 99 HOH HOH A . D 4 HOH 148 448 103 HOH HOH A . D 4 HOH 149 449 187 HOH HOH A . D 4 HOH 150 450 178 HOH HOH A . D 4 HOH 151 451 80 HOH HOH A . D 4 HOH 152 452 93 HOH HOH A . D 4 HOH 153 453 161 HOH HOH A . D 4 HOH 154 454 76 HOH HOH A . D 4 HOH 155 455 74 HOH HOH A . D 4 HOH 156 456 149 HOH HOH A . D 4 HOH 157 457 102 HOH HOH A . D 4 HOH 158 458 75 HOH HOH A . D 4 HOH 159 459 203 HOH HOH A . D 4 HOH 160 460 101 HOH HOH A . D 4 HOH 161 461 156 HOH HOH A . D 4 HOH 162 462 137 HOH HOH A . D 4 HOH 163 463 81 HOH HOH A . D 4 HOH 164 464 193 HOH HOH A . D 4 HOH 165 465 129 HOH HOH A . D 4 HOH 166 466 77 HOH HOH A . D 4 HOH 167 467 185 HOH HOH A . D 4 HOH 168 468 182 HOH HOH A . D 4 HOH 169 469 139 HOH HOH A . D 4 HOH 170 470 84 HOH HOH A . D 4 HOH 171 471 171 HOH HOH A . D 4 HOH 172 472 210 HOH HOH A . D 4 HOH 173 473 177 HOH HOH A . D 4 HOH 174 474 73 HOH HOH A . D 4 HOH 175 475 180 HOH HOH A . D 4 HOH 176 476 184 HOH HOH A . D 4 HOH 177 477 140 HOH HOH A . D 4 HOH 178 478 151 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 290 ? 1 MORE -10 ? 1 'SSA (A^2)' 6720 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 97 ? A HIS 97 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 NE2 ? A HIS 101 ? A HIS 101 ? 1_555 94.4 ? 2 NE2 ? A HIS 97 ? A HIS 97 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 NE2 ? A HIS 107 ? A HIS 107 ? 1_555 93.9 ? 3 NE2 ? A HIS 101 ? A HIS 101 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 NE2 ? A HIS 107 ? A HIS 107 ? 1_555 94.8 ? 4 NE2 ? A HIS 97 ? A HIS 97 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O ? D HOH . ? A HOH 343 ? 1_555 89.0 ? 5 NE2 ? A HIS 101 ? A HIS 101 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O ? D HOH . ? A HOH 343 ? 1_555 170.7 ? 6 NE2 ? A HIS 107 ? A HIS 107 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O ? D HOH . ? A HOH 343 ? 1_555 93.5 ? 7 NE2 ? A HIS 97 ? A HIS 97 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O1 ? C OXY . ? A OXY 202 ? 1_555 94.8 ? 8 NE2 ? A HIS 101 ? A HIS 101 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O1 ? C OXY . ? A OXY 202 ? 1_555 92.6 ? 9 NE2 ? A HIS 107 ? A HIS 107 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O1 ? C OXY . ? A OXY 202 ? 1_555 168.1 ? 10 O ? D HOH . ? A HOH 343 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O1 ? C OXY . ? A OXY 202 ? 1_555 78.5 ? 11 NE2 ? A HIS 97 ? A HIS 97 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O ? D HOH . ? A HOH 311 ? 1_555 170.5 ? 12 NE2 ? A HIS 101 ? A HIS 101 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O ? D HOH . ? A HOH 311 ? 1_555 92.0 ? 13 NE2 ? A HIS 107 ? A HIS 107 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O ? D HOH . ? A HOH 311 ? 1_555 92.5 ? 14 O ? D HOH . ? A HOH 343 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O ? D HOH . ? A HOH 311 ? 1_555 83.6 ? 15 O1 ? C OXY . ? A OXY 202 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O ? D HOH . ? A HOH 311 ? 1_555 77.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-11-09 2 'Structure model' 1 1 2016-12-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0032 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 20151015 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 20151015 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHARP ? ? ? 2.8.5 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HE2 A HIS 97 ? ? NI A NI 201 ? ? 1.24 2 1 HE2 A HIS 101 ? ? NI A NI 201 ? ? 1.25 3 1 HE2 A HIS 107 ? ? NI A NI 201 ? ? 1.28 4 1 C A LYS 17 ? ? H A ASP 18 ? ? 1.46 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 41 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 302 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_455 _pdbx_validate_symm_contact.dist 2.05 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 SER _pdbx_validate_rmsd_bond.auth_seq_id_1 2 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 SER _pdbx_validate_rmsd_bond.auth_seq_id_2 2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.282 _pdbx_validate_rmsd_bond.bond_target_value 1.418 _pdbx_validate_rmsd_bond.bond_deviation -0.136 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.013 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 19 ? ? CZ A ARG 19 ? ? NH1 A ARG 19 ? ? 115.50 120.30 -4.80 0.50 N 2 1 CB A ASP 51 ? ? CG A ASP 51 ? ? OD2 A ASP 51 ? ? 125.87 118.30 7.57 0.90 N 3 1 NE A ARG 76 ? ? CZ A ARG 76 ? ? NH1 A ARG 76 ? ? 116.65 120.30 -3.65 0.50 N 4 1 CB A ASP 108 ? ? CG A ASP 108 ? ? OD2 A ASP 108 ? ? 125.18 118.30 6.88 0.90 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TYR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 82 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -127.31 _pdbx_validate_torsion.psi -81.91 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 476 ? 5.82 . 2 1 O ? A HOH 477 ? 6.00 . 3 1 O ? A HOH 478 ? 6.02 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 53 ? A ALA 53 2 1 Y 1 A GLU 54 ? A GLU 54 3 1 Y 1 A HIS 55 ? A HIS 55 4 1 Y 1 A THR 56 ? A THR 56 5 1 Y 1 A ARG 57 ? A ARG 57 6 1 Y 1 A HIS 58 ? A HIS 58 7 1 Y 1 A ASP 59 ? A ASP 59 8 1 Y 1 A SER 60 ? A SER 60 9 1 Y 1 A LYS 61 ? A LYS 61 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 'OXYGEN MOLECULE' OXY 4 water HOH #