HEADER IMMUNE SYSTEM 22-APR-16 5JIH TITLE CRYSTAL STRUCTURE OF HER2 BINDING IGG1-FC (FCAB STAB19) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HINGE-CH2-CH3, UNP RESIDUES 108-329; COMPND 5 SYNONYM: FCAB STAB19; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E; SOURCE 10 EXPRESSION_SYSTEM_TISSUE: KIDNEY; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_VECTOR: PTT5 KEYWDS IMMUNE SYSTEM, ANTIBODY ENGINEERING, IMMUNOGLOBULIN G1, FC FRAGMENT, KEYWDS 2 GLYCOSYLATIONS, CH3 DOMAIN, FCAB, HER2, ERBB-2 EXPDTA X-RAY DIFFRACTION AUTHOR A.HUMM,E.LOBNER,G.MLYNEK,C.OBINGER,K.DJINOVIC-CARUGO REVDAT 6 20-NOV-24 5JIH 1 REMARK REVDAT 5 10-JAN-24 5JIH 1 REMARK HETSYN LINK REVDAT 4 29-JUL-20 5JIH 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 14-JUN-17 5JIH 1 JRNL REVDAT 2 31-MAY-17 5JIH 1 JRNL REVDAT 1 12-APR-17 5JIH 0 JRNL AUTH E.LOBNER,A.S.HUMM,K.GORITZER,G.MLYNEK,M.G.PUCHINGER, JRNL AUTH 2 C.HASENHINDL,F.RUKER,M.W.TRAXLMAYR,K.DJINOVIC-CARUGO, JRNL AUTH 3 C.OBINGER JRNL TITL FCAB-HER2 INTERACTION: A MENAGE A TROIS. LESSONS FROM X-RAY JRNL TITL 2 AND SOLUTION STUDIES. JRNL REF STRUCTURE V. 25 878 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28528777 JRNL DOI 10.1016/J.STR.2017.04.014 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1894 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 64852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.190 REMARK 3 FREE R VALUE TEST SET COUNT : 4663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8373 - 5.1636 0.98 2204 168 0.1863 0.2093 REMARK 3 2 5.1636 - 4.0993 0.97 2063 162 0.1518 0.1737 REMARK 3 3 4.0993 - 3.5813 0.99 2067 160 0.1871 0.2510 REMARK 3 4 3.5813 - 3.2540 0.99 2072 160 0.1917 0.2223 REMARK 3 5 3.2540 - 3.0208 0.98 2036 159 0.2045 0.2374 REMARK 3 6 3.0208 - 2.8427 0.99 2050 157 0.2151 0.2220 REMARK 3 7 2.8427 - 2.7004 0.99 2043 160 0.2080 0.2074 REMARK 3 8 2.7004 - 2.5828 0.99 2046 160 0.2037 0.2473 REMARK 3 9 2.5828 - 2.4834 1.00 1984 153 0.2024 0.2569 REMARK 3 10 2.4834 - 2.3977 0.99 2072 160 0.2000 0.2425 REMARK 3 11 2.3977 - 2.3227 0.99 2036 157 0.1880 0.2241 REMARK 3 12 2.3227 - 2.2563 0.99 1990 155 0.2029 0.2288 REMARK 3 13 2.2563 - 2.1969 1.00 2041 160 0.2020 0.2478 REMARK 3 14 2.1969 - 2.1433 0.99 2020 158 0.1996 0.2432 REMARK 3 15 2.1433 - 2.0946 0.99 2015 157 0.2069 0.2435 REMARK 3 16 2.0946 - 2.0500 1.00 2054 158 0.2135 0.2467 REMARK 3 17 2.0500 - 2.0090 1.00 2014 158 0.2050 0.2670 REMARK 3 18 2.0090 - 1.9711 0.98 1999 154 0.2081 0.2755 REMARK 3 19 1.9711 - 1.9359 0.99 1990 154 0.2160 0.2754 REMARK 3 20 1.9359 - 1.9031 0.99 2005 156 0.2340 0.2736 REMARK 3 21 1.9031 - 1.8724 0.99 1998 156 0.2491 0.3124 REMARK 3 22 1.8724 - 1.8436 0.99 2000 156 0.2788 0.2775 REMARK 3 23 1.8436 - 1.8165 0.99 2000 156 0.3022 0.3292 REMARK 3 24 1.8165 - 1.7909 0.99 2033 159 0.2730 0.3439 REMARK 3 25 1.7909 - 1.7667 0.99 2000 155 0.2703 0.2749 REMARK 3 26 1.7667 - 1.7437 1.00 2045 159 0.2947 0.3223 REMARK 3 27 1.7437 - 1.7219 0.99 1970 153 0.3092 0.3543 REMARK 3 28 1.7219 - 1.7012 0.96 1933 143 0.3394 0.3621 REMARK 3 29 1.7012 - 1.6814 0.92 1873 150 0.3546 0.3984 REMARK 3 30 1.6814 - 1.6625 0.76 1536 110 0.3668 0.3887 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3692 REMARK 3 ANGLE : 1.488 5059 REMARK 3 CHIRALITY : 0.077 592 REMARK 3 PLANARITY : 0.008 623 REMARK 3 DIHEDRAL : 14.049 1417 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND RESID 341 THROUGH 443 REMARK 3 ORIGIN FOR THE GROUP (A): 71.3262 87.2368 40.8171 REMARK 3 T TENSOR REMARK 3 T11: 0.3103 T22: 0.4421 REMARK 3 T33: 0.3526 T12: 0.0593 REMARK 3 T13: -0.0183 T23: -0.0913 REMARK 3 L TENSOR REMARK 3 L11: 3.4144 L22: 2.3634 REMARK 3 L33: 1.8046 L12: -1.2676 REMARK 3 L13: 0.3633 L23: -0.6097 REMARK 3 S TENSOR REMARK 3 S11: -0.2700 S12: -0.6505 S13: 0.3954 REMARK 3 S21: 0.3297 S22: 0.2879 S23: -0.2541 REMARK 3 S31: -0.2681 S32: 0.0729 S33: -0.0180 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND RESID 341 THROUGH 443 REMARK 3 ORIGIN FOR THE GROUP (A): 78.5133 71.6459 38.3141 REMARK 3 T TENSOR REMARK 3 T11: 0.2213 T22: 0.3806 REMARK 3 T33: 0.3370 T12: 0.0300 REMARK 3 T13: -0.0040 T23: 0.1042 REMARK 3 L TENSOR REMARK 3 L11: 2.9174 L22: 3.1637 REMARK 3 L33: 1.9638 L12: -0.3466 REMARK 3 L13: -0.2200 L23: -0.2666 REMARK 3 S TENSOR REMARK 3 S11: -0.2333 S12: -0.6182 S13: -0.3494 REMARK 3 S21: 0.0849 S22: 0.1998 S23: 0.1951 REMARK 3 S31: 0.1081 S32: -0.2193 S33: 0.0989 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND RESID 237 THROUGH 340 REMARK 3 ORIGIN FOR THE GROUP (A): 57.7100 93.4204 11.8498 REMARK 3 T TENSOR REMARK 3 T11: 0.4598 T22: 0.4301 REMARK 3 T33: 0.4266 T12: -0.0361 REMARK 3 T13: -0.0050 T23: 0.0928 REMARK 3 L TENSOR REMARK 3 L11: 2.9725 L22: 1.2639 REMARK 3 L33: 3.0839 L12: 0.2407 REMARK 3 L13: -0.6389 L23: -0.2984 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: 0.6838 S13: 0.2777 REMARK 3 S21: -0.4495 S22: 0.0405 S23: 0.0573 REMARK 3 S31: -0.0615 S32: 0.0436 S33: -0.1150 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND RESID 237 THROUGH 340 REMARK 3 ORIGIN FOR THE GROUP (A): 83.5408 67.4177 8.3812 REMARK 3 T TENSOR REMARK 3 T11: 1.8399 T22: 0.4185 REMARK 3 T33: 0.4211 T12: -0.1548 REMARK 3 T13: -0.2486 T23: -0.1133 REMARK 3 L TENSOR REMARK 3 L11: 0.1130 L22: 0.3940 REMARK 3 L33: 0.4674 L12: 0.2035 REMARK 3 L13: -0.0923 L23: -0.1487 REMARK 3 S TENSOR REMARK 3 S11: -0.2499 S12: 0.5150 S13: -0.2764 REMARK 3 S21: -2.5842 S22: -0.0072 S23: 0.0616 REMARK 3 S31: 0.7936 S32: 0.0757 S33: -1.9084 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JIH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000218826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.968627 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION OCT 15, 2015 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65106 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.663 REMARK 200 RESOLUTION RANGE LOW (A) : 46.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05823 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 1.23100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX DEV. VER 1.10-2247 REMARK 200 STARTING MODEL: 5JII REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M TRIS, 22% (W/V) PEG 3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.82850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.25150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.73250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.25150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.82850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.73250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 LEU A 234 REMARK 465 LEU A 235 REMARK 465 GLY A 236 REMARK 465 SER A 444 REMARK 465 PRO A 445 REMARK 465 GLY A 446 REMARK 465 THR B 225 REMARK 465 CYS B 226 REMARK 465 PRO B 227 REMARK 465 PRO B 228 REMARK 465 CYS B 229 REMARK 465 PRO B 230 REMARK 465 ALA B 231 REMARK 465 PRO B 232 REMARK 465 GLU B 233 REMARK 465 LEU B 234 REMARK 465 LEU B 235 REMARK 465 GLY B 236 REMARK 465 SER B 444 REMARK 465 PRO B 445 REMARK 465 GLY B 446 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 269 CG CD OE1 OE2 REMARK 480 LYS A 288 CD CE NZ REMARK 480 LYS A 290 CE NZ REMARK 480 ARG A 292 CZ NH1 NH2 REMARK 480 GLU A 293 CD OE1 OE2 REMARK 480 LYS A 322 CE NZ REMARK 480 LYS A 326 CG CD CE NZ REMARK 480 ARG A 355 CD NE CZ NH1 NH2 REMARK 480 ASP A 361 CG OD1 OD2 REMARK 480 GLN A 386 CG CD OE1 NE2 REMARK 480 GLU A 415B CB CG CD OE1 OE2 REMARK 480 ARG A 415E CG CD NE CZ NH1 NH2 REMARK 480 ARG A 416 CZ NH1 NH2 REMARK 480 LYS B 246 CE NZ REMARK 480 GLU B 269 CG CD OE1 OE2 REMARK 480 GLU B 272 CD OE1 OE2 REMARK 480 LYS B 288 CD CE NZ REMARK 480 LYS B 290 CG CD CE NZ REMARK 480 GLU B 294 CB CG CD OE1 OE2 REMARK 480 TYR B 296 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR B 296 OH REMARK 480 SER B 298 CB OG REMARK 480 LYS B 317 CE NZ REMARK 480 LYS B 320 CG CD CE NZ REMARK 480 LYS B 322 CG CD CE NZ REMARK 480 LYS B 326 CB CG CD CE NZ REMARK 480 ARG B 355 CD NE CZ NH1 NH2 REMARK 480 GLN B 386 CG CD OE1 NE2 REMARK 480 GLU B 415B CB CG CD OE1 OE2 REMARK 480 ARG B 415E CG CD NE CZ NH1 NH2 REMARK 480 ARG B 416 CD NE CZ NH1 NH2 REMARK 480 HIS B 419 ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG B 344 O HOH B 603 1.43 REMARK 500 H ASN A 384 O HOH A 601 1.53 REMARK 500 OE2 GLU A 272 HZ2 LYS A 326 1.59 REMARK 500 O HOH A 627 O HOH A 719 1.86 REMARK 500 O ASP B 270 O HOH B 601 1.92 REMARK 500 O3 MAN D 6 O HOH B 602 1.99 REMARK 500 NH1 ARG B 344 O HOH B 603 2.15 REMARK 500 O HOH A 603 O HOH A 677 2.16 REMARK 500 O6 BMA C 3 C2 MAN C 6 2.17 REMARK 500 O VAL A 422 O HOH A 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 434 19.80 56.26 REMARK 500 PRO B 374 -176.01 -68.88 REMARK 500 ASN B 434 19.39 58.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 732 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 733 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 734 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B 696 DISTANCE = 6.32 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JIK RELATED DB: PDB REMARK 900 RELATED ID: 5JII RELATED DB: PDB DBREF 5JIH A 225 446 UNP P01857 IGHG1_HUMAN 108 329 DBREF 5JIH B 225 446 UNP P01857 IGHG1_HUMAN 108 329 SEQADV 5JIH TYR A 358 UNP P01857 LEU 241 ENGINEERED MUTATION SEQADV 5JIH LEU A 359 UNP P01857 THR 242 ENGINEERED MUTATION SEQADV 5JIH SER A 360 UNP P01857 LYS 243 ENGINEERED MUTATION SEQADV 5JIH ASP A 361 UNP P01857 ASN 244 ENGINEERED MUTATION SEQADV 5JIH SER A 362 UNP P01857 GLN 245 ENGINEERED MUTATION SEQADV 5JIH PRO A 413 UNP P01857 ASP 246 ENGINEERED MUTATION SEQADV 5JIH ARG A 414 UNP P01857 LYS 247 ENGINEERED MUTATION SEQADV 5JIH HIS A 415 UNP P01857 SER 248 ENGINEERED MUTATION SEQADV 5JIH SER A 415A UNP P01857 INSERTION SEQADV 5JIH GLU A 415B UNP P01857 INSERTION SEQADV 5JIH THR A 415C UNP P01857 INSERTION SEQADV 5JIH MET A 415D UNP P01857 INSERTION SEQADV 5JIH ARG A 415E UNP P01857 INSERTION SEQADV 5JIH ALA A 418 UNP P01857 GLN 301 ENGINEERED MUTATION SEQADV 5JIH HIS A 419 UNP P01857 GLN 302 ENGINEERED MUTATION SEQADV 5JIH TYR B 358 UNP P01857 LEU 241 ENGINEERED MUTATION SEQADV 5JIH LEU B 359 UNP P01857 THR 242 ENGINEERED MUTATION SEQADV 5JIH SER B 360 UNP P01857 LYS 243 ENGINEERED MUTATION SEQADV 5JIH ASP B 361 UNP P01857 ASN 244 ENGINEERED MUTATION SEQADV 5JIH SER B 362 UNP P01857 GLN 245 ENGINEERED MUTATION SEQADV 5JIH PRO B 413 UNP P01857 ASP 246 ENGINEERED MUTATION SEQADV 5JIH ARG B 414 UNP P01857 LYS 247 ENGINEERED MUTATION SEQADV 5JIH HIS B 415 UNP P01857 SER 248 ENGINEERED MUTATION SEQADV 5JIH SER B 415A UNP P01857 INSERTION SEQADV 5JIH GLU B 415B UNP P01857 INSERTION SEQADV 5JIH THR B 415C UNP P01857 INSERTION SEQADV 5JIH MET B 415D UNP P01857 INSERTION SEQADV 5JIH ARG B 415E UNP P01857 INSERTION SEQADV 5JIH ALA B 418 UNP P01857 GLN 301 ENGINEERED MUTATION SEQADV 5JIH HIS B 419 UNP P01857 GLN 302 ENGINEERED MUTATION SEQRES 1 A 227 THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU GLY GLY SEQRES 2 A 227 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 3 A 227 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 4 A 227 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 5 A 227 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 6 A 227 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 7 A 227 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 8 A 227 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 9 A 227 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 10 A 227 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 11 A 227 ARG ASP GLU TYR LEU SER ASP SER VAL SER LEU THR CYS SEQRES 12 A 227 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 13 A 227 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 14 A 227 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 15 A 227 TYR SER LYS LEU THR VAL PRO ARG HIS SER GLU THR MET SEQRES 16 A 227 ARG ARG TRP ALA HIS GLY ASN VAL PHE SER CYS SER VAL SEQRES 17 A 227 MET HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER SEQRES 18 A 227 LEU SER LEU SER PRO GLY SEQRES 1 B 227 THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU GLY GLY SEQRES 2 B 227 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 3 B 227 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 4 B 227 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 5 B 227 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 6 B 227 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 7 B 227 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 8 B 227 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 9 B 227 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 10 B 227 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 11 B 227 ARG ASP GLU TYR LEU SER ASP SER VAL SER LEU THR CYS SEQRES 12 B 227 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 13 B 227 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 14 B 227 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 15 B 227 TYR SER LYS LEU THR VAL PRO ARG HIS SER GLU THR MET SEQRES 16 B 227 ARG ARG TRP ALA HIS GLY ASN VAL PHE SER CYS SER VAL SEQRES 17 B 227 MET HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER SEQRES 18 B 227 LEU SER LEU SER PRO GLY HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 28 HET MAN C 6 11 HET NAG C 7 28 HET FUC C 8 21 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 28 HET MAN D 6 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 7(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 FUC C6 H12 O5 FORMUL 5 HOH *230(H2 O) HELIX 1 AA1 LYS A 246 MET A 252 1 7 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 SER A 354 SER A 360 5 7 HELIX 4 AA4 SER A 415A GLY A 420 1 10 HELIX 5 AA5 LEU A 432 TYR A 436 5 5 HELIX 6 AA6 LYS B 246 MET B 252 1 7 HELIX 7 AA7 LEU B 309 ASN B 315 1 7 HELIX 8 AA8 SER B 354 SER B 360 5 7 HELIX 9 AA9 SER B 415A GLY B 420 1 10 HELIX 10 AB1 LEU B 432 ASN B 434 5 3 SHEET 1 AA1 4 SER A 239 PHE A 243 0 SHEET 2 AA1 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 AA1 4 TYR A 300 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 AA1 4 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 AA2 4 SER A 239 PHE A 243 0 SHEET 2 AA2 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 AA2 4 TYR A 300 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 AA2 4 GLU A 293 GLU A 294 -1 N GLU A 293 O ARG A 301 SHEET 1 AA3 4 VAL A 282 VAL A 284 0 SHEET 2 AA3 4 LYS A 274 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA3 4 TYR A 319 SER A 324 -1 O LYS A 322 N ASN A 276 SHEET 4 AA3 4 ILE A 332 ILE A 336 -1 O ILE A 336 N TYR A 319 SHEET 1 AA4 4 GLN A 347 LEU A 351 0 SHEET 2 AA4 4 SER A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA4 4 PHE A 404 PRO A 413 -1 O VAL A 412 N VAL A 363 SHEET 4 AA4 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 AA5 4 GLN A 347 LEU A 351 0 SHEET 2 AA5 4 SER A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA5 4 PHE A 404 PRO A 413 -1 O VAL A 412 N VAL A 363 SHEET 4 AA5 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 AA6 4 GLN A 386 GLU A 388 0 SHEET 2 AA6 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 AA6 4 PHE A 423 MET A 428 -1 O SER A 426 N GLU A 380 SHEET 4 AA6 4 THR A 437 LEU A 441 -1 O THR A 437 N VAL A 427 SHEET 1 AA7 4 SER B 239 PHE B 243 0 SHEET 2 AA7 4 GLU B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 AA7 4 TYR B 300 THR B 307 -1 O VAL B 302 N VAL B 263 SHEET 4 AA7 4 LYS B 288 THR B 289 -1 N LYS B 288 O VAL B 305 SHEET 1 AA8 4 SER B 239 PHE B 243 0 SHEET 2 AA8 4 GLU B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 AA8 4 TYR B 300 THR B 307 -1 O VAL B 302 N VAL B 263 SHEET 4 AA8 4 GLU B 293 GLU B 294 -1 N GLU B 293 O ARG B 301 SHEET 1 AA9 4 VAL B 282 VAL B 284 0 SHEET 2 AA9 4 LYS B 274 VAL B 279 -1 N VAL B 279 O VAL B 282 SHEET 3 AA9 4 TYR B 319 SER B 324 -1 O LYS B 320 N TYR B 278 SHEET 4 AA9 4 ILE B 332 ILE B 336 -1 O ILE B 336 N TYR B 319 SHEET 1 AB1 4 GLN B 347 LEU B 351 0 SHEET 2 AB1 4 SER B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 AB1 4 PHE B 404 PRO B 413 -1 O VAL B 412 N VAL B 363 SHEET 4 AB1 4 TYR B 391 THR B 393 -1 N LYS B 392 O LYS B 409 SHEET 1 AB2 4 GLN B 347 LEU B 351 0 SHEET 2 AB2 4 SER B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 AB2 4 PHE B 404 PRO B 413 -1 O VAL B 412 N VAL B 363 SHEET 4 AB2 4 VAL B 397 LEU B 398 -1 N VAL B 397 O PHE B 405 SHEET 1 AB3 4 GLN B 386 GLU B 388 0 SHEET 2 AB3 4 ALA B 378 SER B 383 -1 N SER B 383 O GLN B 386 SHEET 3 AB3 4 PHE B 423 MET B 428 -1 O SER B 426 N GLU B 380 SHEET 4 AB3 4 TYR B 436 LEU B 441 -1 O THR B 437 N VAL B 427 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.03 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.06 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.05 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.02 LINK ND2 ASN A 297 C1 NAG C 1 1555 1555 1.47 LINK ND2 ASN B 297 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O6 NAG C 1 C1 FUC C 8 1555 1555 1.46 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.43 LINK O6 BMA C 3 C1 MAN C 6 1555 1555 1.43 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.44 LINK O2 MAN C 6 C1 NAG C 7 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 6 1555 1555 1.45 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.44 CISPEP 1 TYR A 373 PRO A 374 0 -8.65 CISPEP 2 TYR B 373 PRO B 374 0 -7.23 CRYST1 49.657 79.465 140.503 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020138 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007117 0.00000