HEADER IMMUNE SYSTEM 22-APR-16 5JIK TITLE CRYSTAL STRUCTURE OF HER2 BINDING IGG1-FC (FCAB H10-03-6) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HINGE-CH2-CH3, UNP RESIDUES 108-329; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E; SOURCE 10 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PTT5 KEYWDS IMMUNE SYSTEM, ANTIBODY ENGINEERING, IMMUNOGLOBULIN G1, FC FRAGMENT, KEYWDS 2 GLYCOSYLATIONS, CH3 DOMAIN, FCAB, HER2, ERBB-2 EXPDTA X-RAY DIFFRACTION AUTHOR A.HUMM,E.LOBNER,G.MLYNEK,C.OBINGER,K.DJINOVIC-CARUGO REVDAT 6 06-NOV-24 5JIK 1 REMARK REVDAT 5 10-JAN-24 5JIK 1 REMARK HETSYN LINK REVDAT 4 29-JUL-20 5JIK 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 14-JUN-17 5JIK 1 JRNL REVDAT 2 31-MAY-17 5JIK 1 JRNL REVDAT 1 12-APR-17 5JIK 0 JRNL AUTH E.LOBNER,A.S.HUMM,K.GORITZER,G.MLYNEK,M.G.PUCHINGER, JRNL AUTH 2 C.HASENHINDL,F.RUKER,M.W.TRAXLMAYR,K.DJINOVIC-CARUGO, JRNL AUTH 3 C.OBINGER JRNL TITL FCAB-HER2 INTERACTION: A MENAGE A TROIS. LESSONS FROM X-RAY JRNL TITL 2 AND SOLUTION STUDIES. JRNL REF STRUCTURE V. 25 878 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28528777 JRNL DOI 10.1016/J.STR.2017.04.014 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2247 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 51026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.210 REMARK 3 FREE R VALUE TEST SET COUNT : 3680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9186 - 5.3891 0.99 1992 155 0.2115 0.2405 REMARK 3 2 5.3891 - 4.2784 1.00 1880 148 0.1676 0.1891 REMARK 3 3 4.2784 - 3.7379 1.00 1878 144 0.1899 0.2436 REMARK 3 4 3.7379 - 3.3962 1.00 1844 146 0.2154 0.2498 REMARK 3 5 3.3962 - 3.1529 1.00 1845 141 0.2136 0.2236 REMARK 3 6 3.1529 - 2.9670 1.00 1824 143 0.2290 0.2697 REMARK 3 7 2.9670 - 2.8184 1.00 1829 143 0.2430 0.2924 REMARK 3 8 2.8184 - 2.6958 1.00 1829 142 0.2347 0.2595 REMARK 3 9 2.6958 - 2.5920 1.00 1824 143 0.2401 0.2987 REMARK 3 10 2.5920 - 2.5026 1.00 1793 137 0.2431 0.3008 REMARK 3 11 2.5026 - 2.4243 1.00 1840 142 0.2446 0.3333 REMARK 3 12 2.4243 - 2.3550 1.00 1788 141 0.2655 0.2679 REMARK 3 13 2.3550 - 2.2930 1.00 1812 141 0.2725 0.3221 REMARK 3 14 2.2930 - 2.2371 1.00 1812 139 0.2617 0.2733 REMARK 3 15 2.2371 - 2.1862 1.00 1811 140 0.2711 0.3137 REMARK 3 16 2.1862 - 2.1397 1.00 1810 140 0.2723 0.2898 REMARK 3 17 2.1397 - 2.0969 1.00 1790 140 0.2903 0.2909 REMARK 3 18 2.0969 - 2.0573 1.00 1807 140 0.3137 0.3558 REMARK 3 19 2.0573 - 2.0206 1.00 1795 140 0.3219 0.3970 REMARK 3 20 2.0206 - 1.9863 1.00 1802 140 0.3342 0.3918 REMARK 3 21 1.9863 - 1.9543 1.00 1799 141 0.3631 0.4063 REMARK 3 22 1.9543 - 1.9242 1.00 1799 139 0.3840 0.4310 REMARK 3 23 1.9242 - 1.8959 0.99 1783 139 0.3981 0.4621 REMARK 3 24 1.8959 - 1.8692 1.00 1824 141 0.4353 0.4111 REMARK 3 25 1.8692 - 1.8440 1.00 1736 135 0.4652 0.4514 REMARK 3 26 1.8440 - 1.8200 1.00 1800 140 0.4909 0.4823 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3484 REMARK 3 ANGLE : 0.898 4770 REMARK 3 CHIRALITY : 0.051 554 REMARK 3 PLANARITY : 0.006 591 REMARK 3 DIHEDRAL : 14.980 2117 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND RESID 341 THROUGH 443 REMARK 3 ORIGIN FOR THE GROUP (A): 69.9245 86.8171 40.7992 REMARK 3 T TENSOR REMARK 3 T11: 0.4335 T22: 0.6793 REMARK 3 T33: 0.4527 T12: 0.0870 REMARK 3 T13: 0.0144 T23: -0.0491 REMARK 3 L TENSOR REMARK 3 L11: 3.0475 L22: 2.9250 REMARK 3 L33: 2.5910 L12: -1.2319 REMARK 3 L13: 0.3191 L23: -0.3445 REMARK 3 S TENSOR REMARK 3 S11: -0.2045 S12: -0.6956 S13: 0.3814 REMARK 3 S21: 0.1982 S22: 0.2329 S23: -0.2308 REMARK 3 S31: -0.3399 S32: 0.0658 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND RESID 341 THROUGH 443 REMARK 3 ORIGIN FOR THE GROUP (A): 80.1313 73.1592 39.7513 REMARK 3 T TENSOR REMARK 3 T11: 0.4797 T22: 0.6842 REMARK 3 T33: 0.5745 T12: 0.0626 REMARK 3 T13: -0.0072 T23: 0.1800 REMARK 3 L TENSOR REMARK 3 L11: 2.4572 L22: 2.6552 REMARK 3 L33: 1.5619 L12: -1.0110 REMARK 3 L13: -0.1338 L23: 0.2868 REMARK 3 S TENSOR REMARK 3 S11: -0.2116 S12: -0.7324 S13: -0.2954 REMARK 3 S21: 0.3094 S22: 0.1636 S23: -0.0424 REMARK 3 S31: -0.0372 S32: -0.2216 S33: 0.0005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND RESID 237 THROUGH 340 REMARK 3 ORIGIN FOR THE GROUP (A): 57.7921 93.8259 11.9563 REMARK 3 T TENSOR REMARK 3 T11: 0.5522 T22: 0.4941 REMARK 3 T33: 0.5089 T12: -0.0460 REMARK 3 T13: -0.0041 T23: 0.0891 REMARK 3 L TENSOR REMARK 3 L11: 3.6657 L22: 2.0905 REMARK 3 L33: 2.7649 L12: 0.2429 REMARK 3 L13: -1.2052 L23: 0.0896 REMARK 3 S TENSOR REMARK 3 S11: -0.0762 S12: 0.5607 S13: 0.2062 REMARK 3 S21: -0.5130 S22: 0.0883 S23: -0.1085 REMARK 3 S31: -0.0127 S32: -0.0511 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND RESID 237 THROUGH 340 REMARK 3 ORIGIN FOR THE GROUP (A): 83.7713 67.7727 8.6261 REMARK 3 T TENSOR REMARK 3 T11: 1.5938 T22: 0.3040 REMARK 3 T33: 0.6580 T12: -0.2107 REMARK 3 T13: -0.2921 T23: -0.0715 REMARK 3 L TENSOR REMARK 3 L11: 1.1026 L22: 0.5105 REMARK 3 L33: 1.6645 L12: 0.2023 REMARK 3 L13: -0.1833 L23: 0.7604 REMARK 3 S TENSOR REMARK 3 S11: -0.2426 S12: 0.4095 S13: -0.7101 REMARK 3 S21: -2.0840 S22: 0.2588 S23: 0.4302 REMARK 3 S31: 0.6652 S32: 0.1518 S33: -0.5647 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976254 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JANUARY 10, 2014 REMARK 200 DATA SCALING SOFTWARE : XDS VERSION JANUARY 10, 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51065 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 46.903 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07180 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 4.87500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX DEV_1894 REMARK 200 STARTING MODEL: 5JIH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M HEPES, 24% (W/V) PEG 3350, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.87050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.43600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.90400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.43600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.87050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.90400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 LEU A 234 REMARK 465 LEU A 235 REMARK 465 GLY A 236 REMARK 465 ARG A 414 REMARK 465 HIS A 415 REMARK 465 SER A 415A REMARK 465 ALA A 415B REMARK 465 ARG A 415C REMARK 465 MET A 415D REMARK 465 TRP A 415E REMARK 465 ARG A 416 REMARK 465 TRP A 417 REMARK 465 ALA A 418 REMARK 465 HIS A 419 REMARK 465 SER A 444 REMARK 465 PRO A 445 REMARK 465 GLY A 446 REMARK 465 THR B 225 REMARK 465 CYS B 226 REMARK 465 PRO B 227 REMARK 465 PRO B 228 REMARK 465 CYS B 229 REMARK 465 PRO B 230 REMARK 465 ALA B 231 REMARK 465 PRO B 232 REMARK 465 GLU B 233 REMARK 465 LEU B 234 REMARK 465 LEU B 235 REMARK 465 GLY B 236 REMARK 465 ALA B 415B REMARK 465 ARG B 415C REMARK 465 MET B 415D REMARK 465 TRP B 415E REMARK 465 ARG B 416 REMARK 465 TRP B 417 REMARK 465 ALA B 418 REMARK 465 HIS B 419 REMARK 465 SER B 444 REMARK 465 PRO B 445 REMARK 465 GLY B 446 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 248 CE NZ REMARK 480 GLU A 269 CG CD OE1 OE2 REMARK 480 LYS A 288 CD CE NZ REMARK 480 LYS A 326 CG CD CE NZ REMARK 480 ARG A 355 CD NE CZ NH1 NH2 REMARK 480 GLN A 386 CD OE1 NE2 REMARK 480 LYS A 439 CE NZ REMARK 480 LEU A 441 CG CD1 CD2 REMARK 480 SER A 442 CB OG REMARK 480 LYS B 248 CE NZ REMARK 480 ASP B 270 CG OD1 OD2 REMARK 480 GLU B 272 CG CD OE1 OE2 REMARK 480 GLU B 283 CG CD OE1 OE2 REMARK 480 LYS B 288 CG CD CE NZ REMARK 480 LYS B 290 CE NZ REMARK 480 ARG B 292 CG CD REMARK 480 GLU B 294 CB CG CD OE1 OE2 REMARK 480 TYR B 296 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 SER B 298 CB OG REMARK 480 ARG B 301 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 317 CD CE NZ REMARK 480 GLU B 318 CG CD OE1 OE2 REMARK 480 LYS B 320 CB CG CD CE NZ REMARK 480 LYS B 322 CD CE NZ REMARK 480 GLU B 333 CG CD OE1 OE2 REMARK 480 LYS B 340 CE NZ REMARK 480 ARG B 355 CG CD NE CZ NH1 NH2 REMARK 480 GLN B 386 CG CD OE1 NE2 REMARK 480 HIS B 415 ND1 CD2 CE1 NE2 REMARK 480 ASN B 421 CB CG ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 249 HE ARG A 255 1.54 REMARK 500 H ARG B 355 O HOH B 605 1.60 REMARK 500 O6 NAG C 1 O HOH A 601 2.06 REMARK 500 O HIS B 415 O HOH B 601 2.13 REMARK 500 O HOH A 613 O HOH A 655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 413 32.61 -78.21 REMARK 500 ARG B 414 -28.82 77.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 644 DISTANCE = 6.42 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG C 1 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAG D 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JIH RELATED DB: PDB REMARK 900 RELATED ID: 5JII RELATED DB: PDB DBREF 5JIK A 225 446 UNP P01857 IGHG1_HUMAN 108 329 DBREF 5JIK B 225 446 UNP P01857 IGHG1_HUMAN 108 329 SEQADV 5JIK TYR A 358 UNP P01857 LEU 241 ENGINEERED MUTATION SEQADV 5JIK LEU A 359 UNP P01857 THR 242 ENGINEERED MUTATION SEQADV 5JIK TYR A 360 UNP P01857 LYS 243 ENGINEERED MUTATION SEQADV 5JIK GLY A 361 UNP P01857 ASN 244 ENGINEERED MUTATION SEQADV 5JIK ASP A 362 UNP P01857 GLN 245 ENGINEERED MUTATION SEQADV 5JIK PRO A 413 UNP P01857 ASP 296 ENGINEERED MUTATION SEQADV 5JIK ARG A 414 UNP P01857 LYS 297 ENGINEERED MUTATION SEQADV 5JIK HIS A 415 UNP P01857 SER 298 ENGINEERED MUTATION SEQADV 5JIK SER A 415A UNP P01857 INSERTION SEQADV 5JIK ALA A 415B UNP P01857 INSERTION SEQADV 5JIK ARG A 415C UNP P01857 INSERTION SEQADV 5JIK MET A 415D UNP P01857 INSERTION SEQADV 5JIK TRP A 415E UNP P01857 INSERTION SEQADV 5JIK ALA A 418 UNP P01857 GLN 301 ENGINEERED MUTATION SEQADV 5JIK HIS A 419 UNP P01857 GLN 302 ENGINEERED MUTATION SEQADV 5JIK TYR B 358 UNP P01857 LEU 241 ENGINEERED MUTATION SEQADV 5JIK LEU B 359 UNP P01857 THR 242 ENGINEERED MUTATION SEQADV 5JIK TYR B 360 UNP P01857 LYS 243 ENGINEERED MUTATION SEQADV 5JIK GLY B 361 UNP P01857 ASN 244 ENGINEERED MUTATION SEQADV 5JIK ASP B 362 UNP P01857 GLN 245 ENGINEERED MUTATION SEQADV 5JIK PRO B 413 UNP P01857 ASP 296 ENGINEERED MUTATION SEQADV 5JIK ARG B 414 UNP P01857 LYS 297 ENGINEERED MUTATION SEQADV 5JIK HIS B 415 UNP P01857 SER 298 ENGINEERED MUTATION SEQADV 5JIK SER B 415A UNP P01857 INSERTION SEQADV 5JIK ALA B 415B UNP P01857 INSERTION SEQADV 5JIK ARG B 415C UNP P01857 INSERTION SEQADV 5JIK MET B 415D UNP P01857 INSERTION SEQADV 5JIK TRP B 415E UNP P01857 INSERTION SEQADV 5JIK ALA B 418 UNP P01857 GLN 301 ENGINEERED MUTATION SEQADV 5JIK HIS B 419 UNP P01857 GLN 302 ENGINEERED MUTATION SEQRES 1 A 227 THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU GLY GLY SEQRES 2 A 227 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 3 A 227 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 4 A 227 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 5 A 227 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 6 A 227 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 7 A 227 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 8 A 227 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 9 A 227 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 10 A 227 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 11 A 227 ARG ASP GLU TYR LEU TYR GLY ASP VAL SER LEU THR CYS SEQRES 12 A 227 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 13 A 227 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 14 A 227 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 15 A 227 TYR SER LYS LEU THR VAL PRO ARG HIS SER ALA ARG MET SEQRES 16 A 227 TRP ARG TRP ALA HIS GLY ASN VAL PHE SER CYS SER VAL SEQRES 17 A 227 MET HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER SEQRES 18 A 227 LEU SER LEU SER PRO GLY SEQRES 1 B 227 THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU GLY GLY SEQRES 2 B 227 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 3 B 227 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 4 B 227 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 5 B 227 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 6 B 227 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 7 B 227 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 8 B 227 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 9 B 227 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 10 B 227 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 11 B 227 ARG ASP GLU TYR LEU TYR GLY ASP VAL SER LEU THR CYS SEQRES 12 B 227 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 13 B 227 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 14 B 227 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 15 B 227 TYR SER LYS LEU THR VAL PRO ARG HIS SER ALA ARG MET SEQRES 16 B 227 TRP ARG TRP ALA HIS GLY ASN VAL PHE SER CYS SER VAL SEQRES 17 B 227 MET HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER SEQRES 18 B 227 LEU SER LEU SER PRO GLY HET NAG C 1 26 HET NAG C 2 26 HET BMA C 3 19 HET MAN C 4 20 HET NAG C 5 28 HET MAN C 6 20 HET NAG D 1 26 HET NAG D 2 26 HET BMA D 3 19 HET MAN D 4 21 HET MAN D 5 21 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 5 HOH *106(H2 O) HELIX 1 AA1 LYS A 246 MET A 252 1 7 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 SER A 354 TYR A 360 5 7 HELIX 4 AA4 LEU A 432 TYR A 436 5 5 HELIX 5 AA5 LYS B 246 MET B 252 1 7 HELIX 6 AA6 LEU B 309 ASN B 315 1 7 HELIX 7 AA7 SER B 354 TYR B 360 5 7 HELIX 8 AA8 LEU B 432 ASN B 434 5 3 SHEET 1 AA1 4 SER A 239 PHE A 243 0 SHEET 2 AA1 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 AA1 4 TYR A 300 THR A 307 -1 O VAL A 302 N VAL A 263 SHEET 4 AA1 4 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 AA2 4 SER A 239 PHE A 243 0 SHEET 2 AA2 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 AA2 4 TYR A 300 THR A 307 -1 O VAL A 302 N VAL A 263 SHEET 4 AA2 4 GLU A 293 GLU A 294 -1 N GLU A 293 O ARG A 301 SHEET 1 AA3 4 VAL A 282 VAL A 284 0 SHEET 2 AA3 4 VAL A 273 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA3 4 TYR A 319 ASN A 325 -1 O LYS A 322 N ASN A 276 SHEET 4 AA3 4 ILE A 332 ILE A 336 -1 O ILE A 332 N VAL A 323 SHEET 1 AA4 4 GLN A 347 LEU A 351 0 SHEET 2 AA4 4 VAL A 363 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA4 4 PHE A 404 VAL A 412 -1 O LEU A 410 N LEU A 365 SHEET 4 AA4 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 AA5 4 GLN A 347 LEU A 351 0 SHEET 2 AA5 4 VAL A 363 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA5 4 PHE A 404 VAL A 412 -1 O LEU A 410 N LEU A 365 SHEET 4 AA5 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 AA6 4 GLN A 386 GLU A 388 0 SHEET 2 AA6 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 AA6 4 VAL A 422 MET A 428 -1 O SER A 426 N GLU A 380 SHEET 4 AA6 4 THR A 437 SER A 442 -1 O LYS A 439 N CYS A 425 SHEET 1 AA7 4 SER B 239 PHE B 243 0 SHEET 2 AA7 4 GLU B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 AA7 4 TYR B 300 THR B 307 -1 O VAL B 302 N VAL B 263 SHEET 4 AA7 4 LYS B 288 THR B 289 -1 N LYS B 288 O VAL B 305 SHEET 1 AA8 4 SER B 239 PHE B 243 0 SHEET 2 AA8 4 GLU B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 AA8 4 TYR B 300 THR B 307 -1 O VAL B 302 N VAL B 263 SHEET 4 AA8 4 GLU B 293 GLU B 294 -1 N GLU B 293 O ARG B 301 SHEET 1 AA9 4 VAL B 282 VAL B 284 0 SHEET 2 AA9 4 LYS B 274 VAL B 279 -1 N VAL B 279 O VAL B 282 SHEET 3 AA9 4 TYR B 319 SER B 324 -1 O LYS B 320 N TYR B 278 SHEET 4 AA9 4 ILE B 332 ILE B 336 -1 O ILE B 332 N VAL B 323 SHEET 1 AB1 4 GLN B 347 LEU B 351 0 SHEET 2 AB1 4 VAL B 363 PHE B 372 -1 O THR B 366 N LEU B 351 SHEET 3 AB1 4 PHE B 404 VAL B 412 -1 O LEU B 410 N LEU B 365 SHEET 4 AB1 4 TYR B 391 THR B 393 -1 N LYS B 392 O LYS B 409 SHEET 1 AB2 4 GLN B 347 LEU B 351 0 SHEET 2 AB2 4 VAL B 363 PHE B 372 -1 O THR B 366 N LEU B 351 SHEET 3 AB2 4 PHE B 404 VAL B 412 -1 O LEU B 410 N LEU B 365 SHEET 4 AB2 4 VAL B 397 LEU B 398 -1 N VAL B 397 O PHE B 405 SHEET 1 AB3 4 GLN B 386 GLU B 388 0 SHEET 2 AB3 4 ALA B 378 SER B 383 -1 N TRP B 381 O GLU B 388 SHEET 3 AB3 4 PHE B 423 MET B 428 -1 O SER B 426 N GLU B 380 SHEET 4 AB3 4 TYR B 436 LEU B 441 -1 O THR B 437 N VAL B 427 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.04 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.03 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.04 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.03 LINK ND2 ASN B 297 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 6 1555 1555 1.45 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.46 CISPEP 1 TYR A 373 PRO A 374 0 -2.88 CISPEP 2 TYR B 373 PRO B 374 0 -4.07 CRYST1 49.741 79.808 140.872 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020104 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007099 0.00000