HEADER TRANSFERASE 22-APR-16 5JIX TITLE PKG II'S CARBOXYL TERMINAL CYCLIC NUCLEOTIDE BINDING DOMAIN (CNB-B) IN TITLE 2 A COMPLEX WITH 8-BR-CGMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-DEPENDENT PROTEIN KINASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CGK2,CGMP-DEPENDENT PROTEIN KINASE II,CGKII; COMPND 5 EC: 2.7.11.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKG2, PRKGR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYCLIC GMP-DEPENDENT PROTEIN KINASE TYPE II, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.C.CAMPBELL,C.W.KIM REVDAT 4 27-SEP-23 5JIX 1 HETSYN LINK REVDAT 3 27-SEP-17 5JIX 1 JRNL REVDAT 2 23-AUG-17 5JIX 1 JRNL REVDAT 1 03-MAY-17 5JIX 0 JRNL AUTH J.C.CAMPBELL,P.HENNING,E.FRANZ,B.SANKARAN,F.W.HERBERG,C.KIM JRNL TITL STRUCTURAL BASIS OF ANALOG SPECIFICITY IN PKG I AND II. JRNL REF ACS CHEM. BIOL. V. 12 2388 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 28793191 JRNL DOI 10.1021/ACSCHEMBIO.7B00369 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 25594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5108 - 3.5425 1.00 1847 156 0.1687 0.1972 REMARK 3 2 3.5425 - 2.8119 1.00 1759 149 0.1559 0.1603 REMARK 3 3 2.8119 - 2.4565 1.00 1720 146 0.1399 0.1743 REMARK 3 4 2.4565 - 2.2320 1.00 1730 146 0.1333 0.1474 REMARK 3 5 2.2320 - 2.0720 1.00 1713 146 0.1271 0.1653 REMARK 3 6 2.0720 - 1.9498 1.00 1706 144 0.1392 0.1717 REMARK 3 7 1.9498 - 1.8522 1.00 1698 144 0.1572 0.1667 REMARK 3 8 1.8522 - 1.7716 1.00 1702 144 0.1728 0.2018 REMARK 3 9 1.7716 - 1.7034 1.00 1688 143 0.1828 0.2131 REMARK 3 10 1.7034 - 1.6446 1.00 1689 144 0.1986 0.2255 REMARK 3 11 1.6446 - 1.5932 1.00 1671 141 0.2203 0.2521 REMARK 3 12 1.5932 - 1.5476 0.99 1686 142 0.2561 0.2536 REMARK 3 13 1.5476 - 1.5069 0.93 1586 136 0.3152 0.3544 REMARK 3 14 1.5069 - 1.4701 0.83 1401 117 0.3564 0.4137 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1249 REMARK 3 ANGLE : 1.305 1672 REMARK 3 CHIRALITY : 0.073 182 REMARK 3 PLANARITY : 0.006 209 REMARK 3 DIHEDRAL : 14.078 466 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 269 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9756 12.9545 -20.0331 REMARK 3 T TENSOR REMARK 3 T11: 0.1817 T22: 0.2407 REMARK 3 T33: 0.2477 T12: 0.0004 REMARK 3 T13: 0.0308 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.1427 L22: 4.7939 REMARK 3 L33: 0.2536 L12: -0.5733 REMARK 3 L13: 0.1758 L23: -0.8075 REMARK 3 S TENSOR REMARK 3 S11: 0.1398 S12: 0.0708 S13: 0.3419 REMARK 3 S21: -0.3489 S22: -0.1055 S23: -0.4255 REMARK 3 S31: 0.0832 S32: 0.1154 S33: -0.0076 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5438 7.6111 -20.4491 REMARK 3 T TENSOR REMARK 3 T11: 0.1143 T22: 0.1083 REMARK 3 T33: 0.1116 T12: 0.0043 REMARK 3 T13: 0.0079 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.9166 L22: 0.5979 REMARK 3 L33: 1.1640 L12: -0.2674 REMARK 3 L13: -0.6140 L23: 0.2340 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: 0.0879 S13: -0.0203 REMARK 3 S21: 0.0178 S22: -0.0661 S23: -0.0077 REMARK 3 S31: -0.0109 S32: -0.0319 S33: 0.0300 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 308 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9565 7.2930 -6.1658 REMARK 3 T TENSOR REMARK 3 T11: 0.2058 T22: 0.1938 REMARK 3 T33: 0.1910 T12: 0.0429 REMARK 3 T13: 0.0157 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 2.0060 L22: 1.7516 REMARK 3 L33: 2.4296 L12: 0.6990 REMARK 3 L13: 0.1714 L23: 0.5400 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: -0.0940 S13: -0.0157 REMARK 3 S21: 0.0993 S22: -0.0415 S23: 0.2216 REMARK 3 S31: -0.2982 S32: -0.2933 S33: 0.0027 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7823 5.7290 -5.4499 REMARK 3 T TENSOR REMARK 3 T11: 0.1431 T22: 0.1518 REMARK 3 T33: 0.1706 T12: 0.0056 REMARK 3 T13: -0.0071 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.4073 L22: 1.3162 REMARK 3 L33: 1.3494 L12: 0.8773 REMARK 3 L13: -0.2756 L23: -0.3756 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: -0.0647 S13: 0.0364 REMARK 3 S21: 0.0795 S22: -0.0085 S23: -0.0852 REMARK 3 S31: -0.1136 S32: 0.0737 S33: 0.0336 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 336 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4904 0.0477 -0.6288 REMARK 3 T TENSOR REMARK 3 T11: 0.1412 T22: 0.1214 REMARK 3 T33: 0.1193 T12: 0.0046 REMARK 3 T13: 0.0057 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.3963 L22: 1.1948 REMARK 3 L33: 1.3872 L12: 0.0958 REMARK 3 L13: -0.0417 L23: 0.0139 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: -0.1817 S13: -0.0603 REMARK 3 S21: 0.2379 S22: -0.0046 S23: 0.0776 REMARK 3 S31: 0.0632 S32: 0.0618 S33: 0.0171 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 358 THROUGH 368 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9364 -3.8328 -12.1233 REMARK 3 T TENSOR REMARK 3 T11: 0.1038 T22: 0.1023 REMARK 3 T33: 0.1434 T12: -0.0066 REMARK 3 T13: 0.0089 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.8443 L22: 2.0191 REMARK 3 L33: 1.7610 L12: -0.3947 REMARK 3 L13: 0.2244 L23: 1.4970 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: 0.0488 S13: -0.1505 REMARK 3 S21: -0.0551 S22: -0.0625 S23: 0.0196 REMARK 3 S31: 0.0409 S32: -0.0581 S33: 0.1058 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 369 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5162 11.0740 -5.2826 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.1170 REMARK 3 T33: 0.1152 T12: 0.0005 REMARK 3 T13: -0.0246 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.6288 L22: 2.1624 REMARK 3 L33: 2.2797 L12: 0.6898 REMARK 3 L13: -0.6550 L23: 0.2064 REMARK 3 S TENSOR REMARK 3 S11: 0.0786 S12: -0.1493 S13: 0.0711 REMARK 3 S21: 0.2957 S22: -0.0242 S23: -0.1931 REMARK 3 S31: -0.3572 S32: 0.1678 S33: -0.0606 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 383 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8368 0.7031 -24.2096 REMARK 3 T TENSOR REMARK 3 T11: 0.1611 T22: 0.1324 REMARK 3 T33: 0.1330 T12: -0.0075 REMARK 3 T13: -0.0071 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 4.3563 L22: 5.5798 REMARK 3 L33: 2.9224 L12: -3.2152 REMARK 3 L13: -0.2149 L23: 1.2412 REMARK 3 S TENSOR REMARK 3 S11: 0.0519 S12: 0.3289 S13: -0.0623 REMARK 3 S21: -0.2517 S22: -0.1164 S23: -0.0401 REMARK 3 S31: 0.0856 S32: -0.2347 S33: 0.0791 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 418 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3394 -10.2866 -8.8372 REMARK 3 T TENSOR REMARK 3 T11: 0.1718 T22: 0.1576 REMARK 3 T33: 0.1895 T12: 0.0190 REMARK 3 T13: -0.0139 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.3182 L22: 1.0163 REMARK 3 L33: 3.9850 L12: -0.0083 REMARK 3 L13: -1.3955 L23: 0.2337 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: 0.0093 S13: -0.0123 REMARK 3 S21: 0.0735 S22: -0.0045 S23: -0.0711 REMARK 3 S31: 0.1908 S32: 0.0594 S33: 0.0398 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25594 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 41.494 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5BV6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 200 MM CAAC, 0.1M NAAC PH REMARK 280 4.5-4.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.81000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.32000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.32000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.81000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 267 REMARK 465 SER A 268 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 269 OG1 CG2 REMARK 470 GLN A 271 CD OE1 NE2 REMARK 470 GLU A 275 CD OE1 OE2 REMARK 470 GLN A 276 CD OE1 NE2 REMARK 470 LYS A 288 CD CE NZ REMARK 470 LYS A 309 CD CE NZ REMARK 470 ARG A 315 CD NE CZ NH1 NH2 REMARK 470 GLU A 319 CD OE1 OE2 REMARK 470 LYS A 328 CD CE NZ REMARK 470 LYS A 330 CE NZ REMARK 470 GLU A 338 CD OE1 OE2 REMARK 470 ASP A 341 OD1 OD2 REMARK 470 GLN A 342 CD OE1 NE2 REMARK 470 GLN A 350 CD OE1 NE2 REMARK 470 GLU A 396 CD OE1 OE2 REMARK 470 LYS A 414 CD CE NZ REMARK 470 LYS A 418 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 308 O HOH A 601 1.95 REMARK 500 O HOH A 698 O HOH A 706 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 605 O HOH A 686 3444 2.03 REMARK 500 O HOH A 605 O HOH A 678 3444 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 390 -89.68 -120.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 512 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 307 OH REMARK 620 2 ILE A 313 O 113.7 REMARK 620 3 HOH A 606 O 109.1 87.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 348 O REMARK 620 2 HOH A 617 O 90.0 REMARK 620 3 HOH A 629 O 99.9 64.7 REMARK 620 4 HOH A 639 O 85.6 74.2 138.4 REMARK 620 5 HOH A 665 O 82.1 132.8 70.9 150.0 REMARK 620 6 HOH A 700 O 90.6 154.3 140.2 80.2 72.7 REMARK 620 7 HOH A 712 O 170.9 97.2 88.3 90.9 96.9 80.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 395 OE1 REMARK 620 2 GLN A 398 OE1 75.3 REMARK 620 3 EDO A 508 O2 146.4 135.6 REMARK 620 4 EDO A 508 O1 146.5 71.4 65.1 REMARK 620 5 HOH A 636 O 85.4 86.0 84.7 88.5 REMARK 620 6 HOH A 657 O 99.1 94.2 92.0 87.3 175.5 REMARK 620 7 HOH A 667 O 76.0 150.8 73.5 137.5 96.6 85.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 605 O REMARK 620 2 HOH A 607 O 133.6 REMARK 620 3 HOH A 611 O 62.4 74.9 REMARK 620 4 HOH A 682 O 121.1 78.5 136.5 REMARK 620 5 HOH A 686 O 42.4 150.9 83.9 130.1 REMARK 620 6 HOH A 711 O 50.9 107.7 81.0 75.0 87.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE5 A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6J7 A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 512 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JIZ RELATED DB: PDB DBREF 5JIX A 269 418 UNP Q13237 KGP2_HUMAN 269 418 SEQADV 5JIX GLY A 267 UNP Q13237 EXPRESSION TAG SEQADV 5JIX SER A 268 UNP Q13237 EXPRESSION TAG SEQRES 1 A 152 GLY SER THR ALA GLN ALA ARG ASP GLU GLN TYR ARG ASN SEQRES 2 A 152 PHE LEU ARG SER VAL SER LEU LEU LYS ASN LEU PRO GLU SEQRES 3 A 152 ASP LYS LEU THR LYS ILE ILE ASP CYS LEU GLU VAL GLU SEQRES 4 A 152 TYR TYR ASP LYS GLY ASP TYR ILE ILE ARG GLU GLY GLU SEQRES 5 A 152 GLU GLY SER THR PHE PHE ILE LEU ALA LYS GLY LYS VAL SEQRES 6 A 152 LYS VAL THR GLN SER THR GLU GLY HIS ASP GLN PRO GLN SEQRES 7 A 152 LEU ILE LYS THR LEU GLN LYS GLY GLU TYR PHE GLY GLU SEQRES 8 A 152 LYS ALA LEU ILE SER ASP ASP VAL ARG SER ALA ASN ILE SEQRES 9 A 152 ILE ALA GLU GLU ASN ASP VAL ALA CYS LEU VAL ILE ASP SEQRES 10 A 152 ARG GLU THR PHE ASN GLN THR VAL GLY THR PHE GLU GLU SEQRES 11 A 152 LEU GLN LYS TYR LEU GLU GLY TYR VAL ALA ASN LEU ASN SEQRES 12 A 152 ARG ASP ASP GLU LYS ARG HIS ALA LYS HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HET EDO A 505 10 HET EDO A 506 10 HET EDO A 507 10 HET EDO A 508 10 HET EDO A 509 10 HET PE5 A 510 65 HET 6J7 A 511 34 HET NA A 512 1 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL HETNAM 6J7 2-AMINO-8-BROMO-9-[(2R,4AR,6R,7R,7AS)-2,7-DIHYDROXY-2- HETNAM 2 6J7 OXOTETRAHYDRO-2H,4H-2LAMBDA~5~-FURO[3,2-D][1,3, HETNAM 3 6J7 2]DIOXAPHOSPHININ-6-YL]-1,9-DIHYDRO-6H-PURIN-6-ONE HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE HETSYN 3 PE5 GLYCOL PEG400 FORMUL 2 CA 4(CA 2+) FORMUL 6 EDO 5(C2 H6 O2) FORMUL 11 PE5 C18 H38 O9 FORMUL 12 6J7 C10 H11 BR N5 O7 P FORMUL 13 NA NA 1+ FORMUL 14 HOH *119(H2 O) HELIX 1 AA1 THR A 269 SER A 283 1 15 HELIX 2 AA2 VAL A 284 LYS A 288 5 5 HELIX 3 AA3 PRO A 291 LEU A 302 1 12 HELIX 4 AA4 GLY A 356 ASP A 363 1 8 HELIX 5 AA5 ASP A 383 THR A 390 1 8 HELIX 6 AA6 VAL A 391 THR A 393 5 3 HELIX 7 AA7 PHE A 394 ARG A 415 1 22 SHEET 1 AA1 4 GLU A 303 TYR A 307 0 SHEET 2 AA1 4 VAL A 377 ILE A 382 -1 O VAL A 381 N GLU A 303 SHEET 3 AA1 4 PHE A 323 LYS A 328 -1 N ILE A 325 O LEU A 380 SHEET 4 AA1 4 TYR A 354 PHE A 355 -1 O PHE A 355 N PHE A 324 SHEET 1 AA2 4 TYR A 312 ILE A 314 0 SHEET 2 AA2 4 ASN A 369 ALA A 372 -1 O ILE A 370 N ILE A 313 SHEET 3 AA2 4 LYS A 330 GLN A 335 -1 N THR A 334 O ASN A 369 SHEET 4 AA2 4 GLN A 344 GLN A 350 -1 O ILE A 346 N VAL A 333 LINK OH TYR A 307 NA NA A 512 1555 1555 2.77 LINK O ILE A 313 NA NA A 512 1555 1555 2.74 LINK O THR A 348 CA CA A 501 1555 1555 2.41 LINK OE1 GLU A 395 CA CA A 504 1555 1555 2.31 LINK OE1 GLN A 398 CA CA A 504 1555 1555 2.45 LINK CA CA A 501 O HOH A 617 1555 1555 2.42 LINK CA CA A 501 O HOH A 629 1555 2455 2.44 LINK CA CA A 501 O HOH A 639 1555 1555 2.40 LINK CA CA A 501 O HOH A 665 1555 2455 2.56 LINK CA CA A 501 O HOH A 700 1555 1555 2.29 LINK CA CA A 501 O HOH A 712 1555 2455 2.35 LINK CA CA A 502 O HOH A 718 1555 1555 2.93 LINK CA CA A 503 O HOH A 605 1555 1555 2.99 LINK CA CA A 503 O HOH A 607 1555 1555 2.45 LINK CA CA A 503 O HOH A 611 1555 3444 2.48 LINK CA CA A 503 O HOH A 682 1555 1555 2.54 LINK CA CA A 503 O HOH A 686 1555 3444 2.37 LINK CA CA A 503 O HOH A 711 1555 1555 2.32 LINK CA CA A 504 O2 EDO A 508 1555 3444 2.43 LINK CA CA A 504 O1 EDO A 508 1555 3444 2.45 LINK CA CA A 504 O HOH A 636 1555 3444 2.39 LINK CA CA A 504 O HOH A 657 1555 1555 2.32 LINK CA CA A 504 O HOH A 667 1555 3444 2.32 LINK NA NA A 512 O HOH A 606 1555 1555 2.92 SITE 1 AC1 7 THR A 348 HOH A 617 HOH A 629 HOH A 639 SITE 2 AC1 7 HOH A 665 HOH A 700 HOH A 712 SITE 1 AC2 1 HOH A 718 SITE 1 AC3 6 HOH A 605 HOH A 607 HOH A 611 HOH A 682 SITE 2 AC3 6 HOH A 686 HOH A 711 SITE 1 AC4 6 GLU A 395 GLN A 398 EDO A 508 HOH A 636 SITE 2 AC4 6 HOH A 657 HOH A 667 SITE 1 AC5 6 TYR A 312 ILE A 313 GLU A 318 GLU A 395 SITE 2 AC5 6 NA A 512 HOH A 606 SITE 1 AC6 5 LYS A 297 ASP A 383 GLU A 385 THR A 386 SITE 2 AC6 5 HOH A 613 SITE 1 AC7 6 ILE A 314 GLU A 319 GLY A 320 ARG A 366 SITE 2 AC7 6 HOH A 609 HOH A 626 SITE 1 AC8 7 ASP A 308 ASP A 311 GLY A 392 THR A 393 SITE 2 AC8 7 GLN A 398 CA A 504 HOH A 667 SITE 1 AC9 5 GLU A 353 TYR A 354 TYR A 404 HOH A 685 SITE 2 AC9 5 HOH A 687 SITE 1 AD1 9 ASN A 289 LYS A 332 LEU A 345 GLU A 373 SITE 2 AD1 9 PHE A 394 GLU A 396 LEU A 397 HOH A 608 SITE 3 AD1 9 HOH A 653 SITE 1 AD2 16 GLN A 335 LYS A 347 PHE A 355 GLY A 356 SITE 2 AD2 16 GLU A 357 LYS A 358 ALA A 359 ARG A 366 SITE 3 AD2 16 SER A 367 ALA A 368 ILE A 370 LEU A 408 SITE 4 AD2 16 ASP A 412 ARG A 415 HOH A 624 HOH A 643 SITE 1 AD3 7 GLU A 305 TYR A 307 ILE A 313 GLU A 395 SITE 2 AD3 7 LYS A 399 EDO A 505 HOH A 606 CRYST1 41.620 52.090 68.640 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024027 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019198 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014569 0.00000