HEADER TRANSFERASE/INHIBITOR 25-APR-16 5JJR TITLE DENGUE 3 NS5 PROTEIN WITH COMPOUND 29 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2494-3385; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 3; SOURCE 3 ORGANISM_TAXID: 11069; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RDRP, DENGUE, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.LESCAR,A.EL SAHILI REVDAT 3 08-NOV-23 5JJR 1 REMARK LINK REVDAT 2 24-AUG-16 5JJR 1 JRNL REVDAT 1 06-JUL-16 5JJR 0 JRNL AUTH S.P.LIM,C.G.NOBLE,C.C.SEH,T.S.SOH,A.EL SAHILI,G.K.CHAN, JRNL AUTH 2 J.LESCAR,R.ARORA,T.BENSON,S.NILAR,U.MANJUNATHA,K.F.WAN, JRNL AUTH 3 H.DONG,X.XIE,P.Y.SHI,F.YOKOKAWA JRNL TITL POTENT ALLOSTERIC DENGUE VIRUS NS5 POLYMERASE INHIBITORS: JRNL TITL 2 MECHANISM OF ACTION AND RESISTANCE PROFILING JRNL REF PLOS PATHOG. V. 12 05737 2016 JRNL REFN ESSN 1553-7374 JRNL PMID 27500641 JRNL DOI 10.1371/JOURNAL.PPAT.1005737 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 67921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3397 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.04 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.32 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4719 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2210 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4483 REMARK 3 BIN R VALUE (WORKING SET) : 0.2191 REMARK 3 BIN FREE R VALUE : 0.2568 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 236 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6849 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 475 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.56980 REMARK 3 B22 (A**2) : 2.46720 REMARK 3 B33 (A**2) : -8.03690 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.212 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.162 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.150 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.157 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.148 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7142 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9653 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2547 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 171 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1030 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7142 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 894 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8652 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.03 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.08 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67993 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4V0Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM FORMATE 1MM TCEP 18% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 47.30000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.18500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 75.18500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1493 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1562 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 4 REMARK 465 MET A 5 REMARK 465 GLY A 6 REMARK 465 ASN A 405 REMARK 465 ALA A 406 REMARK 465 ALA A 407 REMARK 465 MET A 408 REMARK 465 GLY A 409 REMARK 465 ALA A 410 REMARK 465 VAL A 411 REMARK 465 PHE A 412 REMARK 465 THR A 413 REMARK 465 GLU A 414 REMARK 465 GLU A 415 REMARK 465 ASN A 416 REMARK 465 GLN A 417 REMARK 465 LYS A 456 REMARK 465 ARG A 457 REMARK 465 GLU A 458 REMARK 465 LYS A 459 REMARK 465 LYS A 460 REMARK 465 LEU A 461 REMARK 465 GLY A 462 REMARK 465 GLU A 463 REMARK 465 PHE A 464 REMARK 465 GLY A 465 REMARK 465 LYS A 466 REMARK 465 ALA A 467 REMARK 465 LYS A 468 REMARK 465 GLY A 469 REMARK 465 GLN A 742 REMARK 465 GLY A 743 REMARK 465 ALA A 744 REMARK 465 GLY A 745 REMARK 465 TRP A 746 REMARK 465 PRO A 884 REMARK 465 SER A 885 REMARK 465 MET A 886 REMARK 465 LYS A 887 REMARK 465 ARG A 888 REMARK 465 PHE A 889 REMARK 465 ARG A 890 REMARK 465 LYS A 891 REMARK 465 GLU A 892 REMARK 465 GLU A 893 REMARK 465 GLU A 894 REMARK 465 SER A 895 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 52 -52.34 68.01 REMARK 500 LYS A 173 82.83 -157.08 REMARK 500 SER A 448 17.68 -142.40 REMARK 500 MET A 454 103.43 -176.35 REMARK 500 TYR A 503 -51.98 73.18 REMARK 500 ASN A 574 76.60 -155.35 REMARK 500 GLN A 597 165.98 76.21 REMARK 500 LEU A 748 -51.92 60.36 REMARK 500 SER A 791 151.02 67.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 437 OE2 REMARK 620 2 HIS A 441 NE2 102.1 REMARK 620 3 CYS A 446 SG 101.2 118.5 REMARK 620 4 CYS A 449 SG 114.4 106.9 113.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1006 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 533 OD1 REMARK 620 2 ASP A 664 OD1 89.8 REMARK 620 3 HOH A1130 O 173.0 90.0 REMARK 620 4 HOH A1143 O 81.1 170.0 99.5 REMARK 620 5 HOH A1221 O 89.0 79.3 97.8 96.4 REMARK 620 6 HOH A1263 O 90.7 90.6 82.4 93.5 170.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 712 NE2 REMARK 620 2 CYS A 728 SG 105.7 REMARK 620 3 CYS A 847 SG 100.4 124.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 68E A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1014 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JJS RELATED DB: PDB DBREF 5JJR A 4 895 UNP Q6DLV0 Q6DLV0_9FLAV 2494 3385 SEQADV 5JJR MET A 5 UNP Q6DLV0 GLN 2495 ENGINEERED MUTATION SEQADV 5JJR ILE A 72 UNP Q6DLV0 VAL 2562 ENGINEERED MUTATION SEQADV 5JJR GLU A 374 UNP Q6DLV0 GLY 2864 ENGINEERED MUTATION SEQRES 1 A 892 SER MET GLY GLU THR LEU GLY GLU LYS TRP LYS LYS LYS SEQRES 2 A 892 LEU ASN GLN LEU SER ARG LYS GLU PHE ASP LEU TYR LYS SEQRES 3 A 892 LYS SER GLY ILE THR GLU VAL ASP ARG THR GLU ALA LYS SEQRES 4 A 892 GLU GLY LEU LYS ARG GLY GLU THR THR HIS HIS ALA VAL SEQRES 5 A 892 SER ARG GLY SER ALA LYS LEU GLN TRP PHE VAL GLU ARG SEQRES 6 A 892 ASN MET VAL ILE PRO GLU GLY ARG VAL ILE ASP LEU GLY SEQRES 7 A 892 CYS GLY ARG GLY GLY TRP SER TYR TYR CYS ALA GLY LEU SEQRES 8 A 892 LYS LYS VAL THR GLU VAL ARG GLY TYR THR LYS GLY GLY SEQRES 9 A 892 PRO GLY HIS GLU GLU PRO VAL PRO MET SER THR TYR GLY SEQRES 10 A 892 TRP ASN ILE VAL LYS LEU MET SER GLY LYS ASP VAL PHE SEQRES 11 A 892 TYR LEU PRO PRO GLU LYS CYS ASP THR LEU LEU CYS ASP SEQRES 12 A 892 ILE GLY GLU SER SER PRO SER PRO THR VAL GLU GLU SER SEQRES 13 A 892 ARG THR ILE ARG VAL LEU LYS MET VAL GLU PRO TRP LEU SEQRES 14 A 892 LYS ASN ASN GLN PHE CYS ILE LYS VAL LEU ASN PRO TYR SEQRES 15 A 892 MET PRO THR VAL ILE GLU HIS LEU GLU ARG LEU GLN ARG SEQRES 16 A 892 LYS HIS GLY GLY MET LEU VAL ARG ASN PRO LEU SER ARG SEQRES 17 A 892 ASN SER THR HIS GLU MET TYR TRP ILE SER ASN GLY THR SEQRES 18 A 892 GLY ASN ILE VAL SER SER VAL ASN MET VAL SER ARG LEU SEQRES 19 A 892 LEU LEU ASN ARG PHE THR MET THR HIS ARG ARG PRO THR SEQRES 20 A 892 ILE GLU LYS ASP VAL ASP LEU GLY ALA GLY THR ARG HIS SEQRES 21 A 892 VAL ASN ALA GLU PRO GLU THR PRO ASN MET ASP VAL ILE SEQRES 22 A 892 GLY GLU ARG ILE LYS ARG ILE LYS GLU GLU HIS ASN SER SEQRES 23 A 892 THR TRP HIS TYR ASP ASP GLU ASN PRO TYR LYS THR TRP SEQRES 24 A 892 ALA TYR HIS GLY SER TYR GLU VAL LYS ALA THR GLY SER SEQRES 25 A 892 ALA SER SER MET ILE ASN GLY VAL VAL LYS LEU LEU THR SEQRES 26 A 892 LYS PRO TRP ASP VAL VAL PRO MET VAL THR GLN MET ALA SEQRES 27 A 892 MET THR ASP THR THR PRO PHE GLY GLN GLN ARG VAL PHE SEQRES 28 A 892 LYS GLU LYS VAL ASP THR ARG THR PRO ARG PRO LEU PRO SEQRES 29 A 892 GLY THR ARG LYS VAL MET GLU ILE THR ALA GLU TRP LEU SEQRES 30 A 892 TRP ARG THR LEU GLY ARG ASN LYS ARG PRO ARG LEU CYS SEQRES 31 A 892 THR ARG GLU GLU PHE THR LYS LYS VAL ARG THR ASN ALA SEQRES 32 A 892 ALA MET GLY ALA VAL PHE THR GLU GLU ASN GLN TRP ASP SEQRES 33 A 892 SER ALA LYS ALA ALA VAL GLU ASP GLU GLU PHE TRP LYS SEQRES 34 A 892 LEU VAL ASP ARG GLU ARG GLU LEU HIS LYS LEU GLY LYS SEQRES 35 A 892 CYS GLY SER CYS VAL TYR ASN MET MET GLY LYS ARG GLU SEQRES 36 A 892 LYS LYS LEU GLY GLU PHE GLY LYS ALA LYS GLY SER ARG SEQRES 37 A 892 ALA ILE TRP TYR MET TRP LEU GLY VAL ARG TYR LEU GLU SEQRES 38 A 892 PHE GLU ALA LEU GLY PHE LEU ASN GLU ASP HIS TRP PHE SEQRES 39 A 892 SER ARG GLU ASN SER TYR SER GLY VAL GLU GLY GLU GLY SEQRES 40 A 892 LEU HIS LYS LEU GLY TYR ILE LEU ARG ASP ILE SER LYS SEQRES 41 A 892 ILE PRO GLY GLY ALA MET TYR ALA ASP ASP THR ALA GLY SEQRES 42 A 892 TRP ASP THR ARG ILE THR GLU ASP ASP LEU HIS ASN GLU SEQRES 43 A 892 GLU LYS ILE ILE GLN GLN MET ASP PRO GLU HIS ARG GLN SEQRES 44 A 892 LEU ALA ASN ALA ILE PHE LYS LEU THR TYR GLN ASN LYS SEQRES 45 A 892 VAL VAL LYS VAL GLN ARG PRO THR PRO THR GLY THR VAL SEQRES 46 A 892 MET ASP ILE ILE SER ARG LYS ASP GLN ARG GLY SER GLY SEQRES 47 A 892 GLN VAL GLY THR TYR GLY LEU ASN THR PHE THR ASN MET SEQRES 48 A 892 GLU ALA GLN LEU VAL ARG GLN MET GLU GLY GLU GLY VAL SEQRES 49 A 892 LEU THR LYS ALA ASP LEU GLU ASN PRO HIS LEU LEU GLU SEQRES 50 A 892 LYS LYS ILE THR GLN TRP LEU GLU THR LYS GLY VAL GLU SEQRES 51 A 892 ARG LEU LYS ARG MET ALA ILE SER GLY ASP ASP CYS VAL SEQRES 52 A 892 VAL LYS PRO ILE ASP ASP ARG PHE ALA ASN ALA LEU LEU SEQRES 53 A 892 ALA LEU ASN ASP MET GLY LYS VAL ARG LYS ASP ILE PRO SEQRES 54 A 892 GLN TRP GLN PRO SER LYS GLY TRP HIS ASP TRP GLN GLN SEQRES 55 A 892 VAL PRO PHE CYS SER HIS HIS PHE HIS GLU LEU ILE MET SEQRES 56 A 892 LYS ASP GLY ARG LYS LEU VAL VAL PRO CYS ARG PRO GLN SEQRES 57 A 892 ASP GLU LEU ILE GLY ARG ALA ARG ILE SER GLN GLY ALA SEQRES 58 A 892 GLY TRP SER LEU ARG GLU THR ALA CYS LEU GLY LYS ALA SEQRES 59 A 892 TYR ALA GLN MET TRP SER LEU MET TYR PHE HIS ARG ARG SEQRES 60 A 892 ASP LEU ARG LEU ALA SER ASN ALA ILE CYS SER ALA VAL SEQRES 61 A 892 PRO VAL HIS TRP VAL PRO THR SER ARG THR THR TRP SER SEQRES 62 A 892 ILE HIS ALA HIS HIS GLN TRP MET THR THR GLU ASP MET SEQRES 63 A 892 LEU THR VAL TRP ASN ARG VAL TRP ILE GLU GLU ASN PRO SEQRES 64 A 892 TRP MET GLU ASP LYS THR PRO VAL THR THR TRP GLU ASN SEQRES 65 A 892 VAL PRO TYR LEU GLY LYS ARG GLU ASP GLN TRP CYS GLY SEQRES 66 A 892 SER LEU ILE GLY LEU THR SER ARG ALA THR TRP ALA GLN SEQRES 67 A 892 ASN ILE PRO THR ALA ILE GLN GLN VAL ARG SER LEU ILE SEQRES 68 A 892 GLY ASN GLU GLU PHE LEU ASP TYR MET PRO SER MET LYS SEQRES 69 A 892 ARG PHE ARG LYS GLU GLU GLU SER HET ZN A1001 1 HET ZN A1002 1 HET SAH A1003 26 HET 68E A1004 34 HET EDO A1005 4 HET MG A1006 1 HET EDO A1007 4 HET PEG A1008 7 HET EDO A1009 4 HET PEG A1010 7 HET EDO A1011 4 HET EDO A1012 4 HET EDO A1013 4 HET PEG A1014 7 HETNAM ZN ZINC ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM 68E 5-[5-(3-HYDROXYPROP-1-YN-1-YL)THIOPHEN-2-YL]-4-METHOXY- HETNAM 2 68E 2-METHYL-N-[(QUINOLIN-8-YL)SULFONYL]BENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 SAH C14 H20 N6 O5 S FORMUL 5 68E C25 H20 N2 O5 S2 FORMUL 6 EDO 6(C2 H6 O2) FORMUL 7 MG MG 2+ FORMUL 9 PEG 3(C4 H10 O3) FORMUL 16 HOH *475(H2 O) HELIX 1 AA1 THR A 8 LEU A 20 1 13 HELIX 2 AA2 SER A 21 LYS A 29 1 9 HELIX 3 AA3 ARG A 38 ARG A 47 1 10 HELIX 4 AA4 ARG A 57 ARG A 68 1 12 HELIX 5 AA5 GLY A 85 ALA A 92 1 8 HELIX 6 AA6 GLY A 120 ASN A 122 5 3 HELIX 7 AA7 ASP A 131 LEU A 135 5 5 HELIX 8 AA8 SER A 153 GLU A 169 1 17 HELIX 9 AA9 PRO A 170 LEU A 172 5 3 HELIX 10 AB1 MET A 186 GLY A 201 1 16 HELIX 11 AB2 ASN A 226 MET A 244 1 19 HELIX 12 AB3 ASN A 272 HIS A 287 1 16 HELIX 13 AB4 ASN A 321 LEU A 327 1 7 HELIX 14 AB5 THR A 328 ASP A 332 5 5 HELIX 15 AB6 VAL A 334 MET A 342 1 9 HELIX 16 AB7 THR A 346 VAL A 358 1 13 HELIX 17 AB8 LEU A 366 GLY A 385 1 20 HELIX 18 AB9 THR A 394 THR A 404 1 11 HELIX 19 AC1 ASP A 419 ASP A 427 1 9 HELIX 20 AC2 ASP A 427 LEU A 443 1 17 HELIX 21 AC3 ARG A 471 GLY A 489 1 19 HELIX 22 AC4 GLY A 489 ASP A 494 1 6 HELIX 23 AC5 SER A 498 TYR A 503 1 6 HELIX 24 AC6 GLY A 510 LYS A 523 1 14 HELIX 25 AC7 GLY A 536 ILE A 541 5 6 HELIX 26 AC8 THR A 542 GLU A 550 1 9 HELIX 27 AC9 LYS A 551 MET A 556 5 6 HELIX 28 AD1 ASP A 557 THR A 571 1 15 HELIX 29 AD2 GLY A 604 GLU A 625 1 22 HELIX 30 AD3 THR A 629 ASN A 635 1 7 HELIX 31 AD4 GLU A 640 LYS A 656 1 17 HELIX 32 AD5 ASP A 671 ASN A 676 5 6 HELIX 33 AD6 LEU A 678 MET A 684 1 7 HELIX 34 AD7 ASP A 702 VAL A 706 5 5 HELIX 35 AD8 PRO A 730 ARG A 739 1 10 HELIX 36 AD9 LEU A 748 TYR A 766 1 19 HELIX 37 AE1 ARG A 769 VAL A 783 1 15 HELIX 38 AE2 ASP A 808 ILE A 818 1 11 HELIX 39 AE3 THR A 832 VAL A 836 5 5 HELIX 40 AE4 GLY A 840 CYS A 847 1 8 HELIX 41 AE5 LEU A 853 ASN A 862 1 10 HELIX 42 AE6 ASN A 862 GLY A 875 1 14 SHEET 1 AA1 2 THR A 34 ASP A 37 0 SHEET 2 AA1 2 THR A 250 LYS A 253 1 O THR A 250 N GLU A 35 SHEET 1 AA2 7 VAL A 124 MET A 127 0 SHEET 2 AA2 7 VAL A 97 TYR A 103 1 N VAL A 100 O LYS A 125 SHEET 3 AA2 7 GLY A 75 LEU A 80 1 N VAL A 77 O GLU A 99 SHEET 4 AA2 7 THR A 142 CYS A 145 1 O LEU A 144 N ILE A 78 SHEET 5 AA2 7 GLN A 176 VAL A 181 1 O GLN A 176 N LEU A 143 SHEET 6 AA2 7 MET A 217 ILE A 220 -1 O MET A 217 N VAL A 181 SHEET 7 AA2 7 MET A 203 VAL A 205 -1 N VAL A 205 O TYR A 218 SHEET 1 AA3 4 ALA A 303 GLU A 309 0 SHEET 2 AA3 4 GLY A 586 ARG A 594 -1 O MET A 589 N TYR A 308 SHEET 3 AA3 4 LYS A 575 THR A 583 -1 N VAL A 579 O ASP A 590 SHEET 4 AA3 4 TYR A 451 MET A 454 1 N MET A 453 O LYS A 578 SHEET 1 AA4 2 MET A 658 SER A 661 0 SHEET 2 AA4 2 ASP A 664 VAL A 667 -1 O ASP A 664 N SER A 661 SHEET 1 AA5 2 HIS A 712 ILE A 717 0 SHEET 2 AA5 2 LYS A 723 CYS A 728 -1 O LEU A 724 N LEU A 716 LINK OE2 GLU A 437 ZN ZN A1001 1555 1555 2.10 LINK NE2 HIS A 441 ZN ZN A1001 1555 1555 2.16 LINK SG CYS A 446 ZN ZN A1001 1555 1555 2.26 LINK SG CYS A 449 ZN ZN A1001 1555 1555 2.29 LINK OD1 ASP A 533 MG MG A1006 1555 1555 2.38 LINK OD1 ASP A 664 MG MG A1006 1555 1555 2.12 LINK NE2 HIS A 712 ZN ZN A1002 1555 1555 1.97 LINK SG CYS A 728 ZN ZN A1002 1555 1555 2.38 LINK SG CYS A 847 ZN ZN A1002 1555 1555 2.37 LINK MG MG A1006 O HOH A1130 1555 1555 2.08 LINK MG MG A1006 O HOH A1143 1555 1555 1.95 LINK MG MG A1006 O HOH A1221 1555 1555 2.23 LINK MG MG A1006 O HOH A1263 1555 1555 2.14 SITE 1 AC1 4 GLU A 437 HIS A 441 CYS A 446 CYS A 449 SITE 1 AC2 4 HIS A 712 HIS A 714 CYS A 728 CYS A 847 SITE 1 AC3 19 SER A 56 GLY A 58 GLY A 81 CYS A 82 SITE 2 AC3 19 GLY A 83 GLY A 86 TRP A 87 THR A 104 SITE 3 AC3 19 LYS A 105 HIS A 110 GLU A 111 LYS A 130 SITE 4 AC3 19 ASP A 131 VAL A 132 PHE A 133 ASP A 146 SITE 5 AC3 19 HOH A1115 HOH A1149 HOH A1427 SITE 1 AC4 19 MET A 340 LEU A 511 HIS A 512 CYS A 709 SITE 2 AC4 19 SER A 710 HIS A 711 ARG A 729 ARG A 737 SITE 3 AC4 19 MET A 761 MET A 765 THR A 794 SER A 796 SITE 4 AC4 19 HIS A 798 HIS A 800 GLN A 802 TRP A 803 SITE 5 AC4 19 HOH A1139 HOH A1216 HOH A1296 SITE 1 AC5 4 LYS A 14 LEU A 17 ASN A 18 PRO A 152 SITE 1 AC6 6 ASP A 533 ASP A 664 HOH A1130 HOH A1143 SITE 2 AC6 6 HOH A1221 HOH A1263 SITE 1 AC7 2 ASN A 492 HOH A1217 SITE 1 AC8 6 LYS A 401 TRP A 477 ARG A 481 VAL A 603 SITE 2 AC8 6 EDO A1009 HOH A1217 SITE 1 AC9 4 ASN A 452 GLY A 601 PEG A1008 HOH A1109 SITE 1 AD1 8 GLY A 32 ILE A 33 ARG A 206 PRO A 208 SITE 2 AD1 8 LEU A 237 ARG A 241 HOH A1153 HOH A1285 SITE 1 AD2 4 ARG A 499 LYS A 656 HOH A1119 HOH A1154 SITE 1 AD3 6 VAL A 66 ASN A 69 ILE A 72 GLU A 296 SITE 2 AD3 6 EDO A1013 HOH A1138 SITE 1 AD4 7 ILE A 72 LYS A 95 LYS A 96 ASN A 297 SITE 2 AD4 7 PRO A 298 EDO A1012 HOH A1147 SITE 1 AD5 7 GLU A 35 VAL A 36 ASP A 37 ARG A 38 SITE 2 AD5 7 THR A 39 LYS A 42 ARG A 57 CRYST1 94.600 150.370 69.140 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010571 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014463 0.00000