HEADER TRANSPORT PROTEIN 25-APR-16 5JK4 TITLE PHOSPHATE-BINDING PROTEIN FROM STENOTROPHOMONAS MALTOPHILIA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.3.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA R551-3; SOURCE 3 ORGANISM_TAXID: 391008 KEYWDS PERIPLASMIC BINDING PROTEIN, PYROGLUTAMATE, PHOSPHATE, LOW-BARRIER KEYWDS 2 HYDROGEN BOND, HYDROLASE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.KEEGAN,D.WATERMAN,D.HOPPER,L.COATES,J.GUO,A.R.COKER,P.T.ERSKINE, AUTHOR 2 S.P.WOOD,J.B.COOPER REVDAT 6 10-JAN-24 5JK4 1 REMARK REVDAT 5 11-MAR-20 5JK4 1 SEQRES ATOM REVDAT 4 17-AUG-16 5JK4 1 JRNL REVDAT 3 10-AUG-16 5JK4 1 JRNL REVDAT 2 03-AUG-16 5JK4 1 JRNL REVDAT 1 04-MAY-16 5JK4 0 JRNL AUTH R.KEEGAN,D.G.WATERMAN,D.J.HOPPER,L.COATES,G.TAYLOR,J.GUO, JRNL AUTH 2 A.R.COKER,P.T.ERSKINE,S.P.WOOD,J.B.COOPER JRNL TITL THE 1.1 ANGSTROM RESOLUTION STRUCTURE OF A PERIPLASMIC JRNL TITL 2 PHOSPHATE-BINDING PROTEIN FROM STENOTROPHOMONAS MALTOPHILIA: JRNL TITL 3 A CRYSTALLIZATION CONTAMINANT IDENTIFIED BY MOLECULAR JRNL TITL 4 REPLACEMENT USING THE ENTIRE PROTEIN DATA BANK. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 933 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 27487824 JRNL DOI 10.1107/S2059798316010433 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 120754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.103 REMARK 3 R VALUE (WORKING SET) : 0.102 REMARK 3 FREE R VALUE : 0.125 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 5944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9522 - 3.4172 0.99 4124 216 0.1086 0.1381 REMARK 3 2 3.4172 - 2.7125 0.99 4066 202 0.1005 0.1111 REMARK 3 3 2.7125 - 2.3697 0.98 4016 203 0.0938 0.1195 REMARK 3 4 2.3697 - 2.1531 0.97 3964 219 0.0866 0.1001 REMARK 3 5 2.1531 - 1.9988 0.97 3948 225 0.0864 0.1064 REMARK 3 6 1.9988 - 1.8809 0.97 3950 181 0.0874 0.1065 REMARK 3 7 1.8809 - 1.7867 0.96 3933 217 0.0878 0.1032 REMARK 3 8 1.7867 - 1.7089 0.96 3943 190 0.0847 0.1082 REMARK 3 9 1.7089 - 1.6432 0.96 3882 190 0.0873 0.1134 REMARK 3 10 1.6432 - 1.5865 0.95 3897 196 0.0839 0.1179 REMARK 3 11 1.5865 - 1.5368 0.95 3862 209 0.0853 0.1174 REMARK 3 12 1.5368 - 1.4929 0.95 3848 191 0.0856 0.1164 REMARK 3 13 1.4929 - 1.4536 0.95 3828 203 0.0894 0.1150 REMARK 3 14 1.4536 - 1.4181 0.94 3830 206 0.0916 0.1334 REMARK 3 15 1.4181 - 1.3859 0.94 3878 185 0.0956 0.1213 REMARK 3 16 1.3859 - 1.3564 0.94 3764 214 0.1010 0.1350 REMARK 3 17 1.3564 - 1.3293 0.93 3852 177 0.1053 0.1319 REMARK 3 18 1.3293 - 1.3042 0.94 3768 204 0.1056 0.1257 REMARK 3 19 1.3042 - 1.2809 0.92 3781 190 0.1093 0.1356 REMARK 3 20 1.2809 - 1.2592 0.93 3767 199 0.1161 0.1379 REMARK 3 21 1.2592 - 1.2389 0.92 3744 217 0.1196 0.1362 REMARK 3 22 1.2389 - 1.2198 0.93 3674 207 0.1238 0.1536 REMARK 3 23 1.2198 - 1.2019 0.91 3774 194 0.1296 0.1616 REMARK 3 24 1.2019 - 1.1849 0.92 3732 206 0.1329 0.1592 REMARK 3 25 1.1849 - 1.1689 0.91 3688 203 0.1364 0.1487 REMARK 3 26 1.1689 - 1.1537 0.91 3694 192 0.1365 0.1695 REMARK 3 27 1.1537 - 1.1393 0.92 3752 183 0.1403 0.1549 REMARK 3 28 1.1393 - 1.1256 0.90 3688 158 0.1477 0.1507 REMARK 3 29 1.1256 - 1.1125 0.91 3692 196 0.1636 0.2055 REMARK 3 30 1.1125 - 1.1000 0.85 3471 171 0.1873 0.1941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 10.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 5.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2816 REMARK 3 ANGLE : 0.961 3859 REMARK 3 CHIRALITY : 0.078 454 REMARK 3 PLANARITY : 0.008 504 REMARK 3 DIHEDRAL : 11.903 973 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 120995 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 44.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2Q9T REMARK 200 REMARK 200 REMARK: PLATE-LIKE NEEDLE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 % W/V PEG 8K, 100 MM TRIS PH 8.0, REMARK 280 10 MM SODIUM FORMATE., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.92800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 298 O HOH A 601 1.57 REMARK 500 O HOH A 716 O HOH A 907 2.03 REMARK 500 O HOH A 1025 O HOH A 1247 2.04 REMARK 500 O HOH A 629 O HOH A 763 2.08 REMARK 500 O HOH A 932 O HOH A 987 2.09 REMARK 500 NZ LYS A 298 O HOH A 601 2.10 REMARK 500 OD2 ASP A 14 O HOH A 602 2.12 REMARK 500 O HOH A 1121 O HOH A 1141 2.14 REMARK 500 O HOH A 612 O HOH A 1010 2.15 REMARK 500 O HOH A 919 O HOH A 1165 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 997 O HOH A 1022 2454 1.86 REMARK 500 O HOH A 697 O HOH A 1228 2445 1.91 REMARK 500 O HOH A 919 O HOH A 1306 2554 1.97 REMARK 500 OE1 GLU A 267 O HOH A 750 1455 2.03 REMARK 500 O HOH A 1006 O HOH A 1192 1455 2.05 REMARK 500 O HOH A 859 O HOH A 1228 2445 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 243 1.80 84.35 REMARK 500 THR A 254 -88.19 -123.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1276 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1277 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1278 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1279 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1280 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1281 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A1282 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1283 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A1284 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1285 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1286 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1287 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1288 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A1289 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1290 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1291 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1292 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A1293 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1294 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1295 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A1296 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A1297 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A1298 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A1299 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A1300 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A1301 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH A1302 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH A1303 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH A1304 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH A1305 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH A1306 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH A1307 DISTANCE = 7.72 ANGSTROMS REMARK 525 HOH A1308 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH A1309 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH A1310 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A1311 DISTANCE = 7.96 ANGSTROMS REMARK 525 HOH A1312 DISTANCE = 8.47 ANGSTROMS REMARK 525 HOH A1313 DISTANCE = 8.68 ANGSTROMS REMARK 525 HOH A1314 DISTANCE = 8.95 ANGSTROMS REMARK 525 HOH A1315 DISTANCE = 9.17 ANGSTROMS REMARK 525 HOH A1316 DISTANCE = 9.21 ANGSTROMS REMARK 525 HOH A1317 DISTANCE = 9.48 ANGSTROMS REMARK 525 HOH A1318 DISTANCE = 9.80 ANGSTROMS REMARK 525 HOH A1319 DISTANCE = 10.46 ANGSTROMS REMARK 525 HOH A1320 DISTANCE = 10.53 ANGSTROMS REMARK 525 HOH A1321 DISTANCE = 12.44 ANGSTROMS REMARK 525 HOH A1322 DISTANCE = 12.66 ANGSTROMS REMARK 525 HOH A1323 DISTANCE = 12.70 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 DBREF 5JK4 A 1 373 UNP B4SL31 B4SL31_STRM5 25 397 SEQADV 5JK4 PCA A 1 UNP B4SL31 GLN 25 MODIFIED RESIDUE SEQRES 1 A 373 PCA THR ALA VAL THR GLY GLY GLY ALA SER LEU PRO ALA SEQRES 2 A 373 ASP LEU TYR LYS GLY SER ALA ASP SER ILE LEU PRO ALA SEQRES 3 A 373 ASN PHE SER TYR ALA VAL THR GLY SER GLY THR GLY LYS SEQRES 4 A 373 LYS ALA PHE LEU GLU ASN ASN SER ALA LEU PHE SER THR SEQRES 5 A 373 THR GLY THR VAL HIS PHE ALA GLY SER ASP SER VAL LEU SEQRES 6 A 373 SER SER THR GLU LEU ASN THR TYR ASN SER THR TYR ASN SEQRES 7 A 373 VAL SER GLY ASP ALA ASN ARG TYR GLY ALA LEU VAL GLN SEQRES 8 A 373 ILE PRO SER VAL ALA THR SER VAL THR ILE PRO PHE ASN SEQRES 9 A 373 LYS ALA GLY SER ALA VAL ASP LEU SER VAL THR GLN ILE SEQRES 10 A 373 CYS GLY ILE PHE SER GLY LYS ILE ASN ASN TRP SER GLN SEQRES 11 A 373 LEU ALA GLY LEU GLY ARG THR GLY ALA ILE GLN VAL VAL SEQRES 12 A 373 TYR ARG GLY GLU SER SER GLY THR SER GLU LEU LEU THR SEQRES 13 A 373 ARG PHE LEU THR SER ALA CYS GLN PRO ALA ASP VAL SER SEQRES 14 A 373 GLY THR ASN LEU LYS LEU ALA ASN GLY VAL PRO ALA PHE SEQRES 15 A 373 SER VAL GLN SER THR PHE ALA ASN LEU PHE THR THR VAL SEQRES 16 A 373 PRO SER ASN PHE VAL ALA ALA PRO ALA THR GLY GLY SER SEQRES 17 A 373 ALA LEU TYR ASN ALA VAL TYR ALA VAL ASP GLY ARG VAL SEQRES 18 A 373 GLY TYR VAL GLY PRO ASP VAL ILE PRO SER LEU THR ASP SEQRES 19 A 373 ALA THR LYS VAL ALA LYS VAL LYS SER PHE SER PRO ASP SEQRES 20 A 373 GLU VAL SER VAL GLN ALA THR LEU GLU THR ALA ALA PRO SEQRES 21 A 373 PRO THR GLY ALA ALA ALA GLU ASN PRO ALA ASN TRP VAL SEQRES 22 A 373 PRO VAL PHE GLY ASN PRO SER ALA GLY TYR PRO ILE ALA SEQRES 23 A 373 GLY TYR THR ASN PHE VAL PHE GLY GLN CYS TYR LYS ASN SEQRES 24 A 373 ALA THR VAL GLY ALA ASN VAL ARG GLY PHE LEU THR ARG SEQRES 25 A 373 HIS TYR GLY SER THR VAL VAL ASN GLY VAL GLU GLN GLY SEQRES 26 A 373 PRO ASN ASP ASP ALA ILE ARG ALA HIS LYS PHE ILE PRO SEQRES 27 A 373 LEU THR LYS ALA TRP ARG ASP ALA VAL ARG ALA ARG PHE SEQRES 28 A 373 ALA THR ALA THR ASN ALA GLY ALA VAL ASN ASN PRO SER SEQRES 29 A 373 THR CYS SER GLY ILE GLY ARG PRO LEU HET PCA A 1 14 HET PO4 A 501 5 HETNAM PCA PYROGLUTAMIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 1 PCA C5 H7 N O3 FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *723(H2 O) HELIX 1 AA1 PRO A 12 LYS A 17 1 6 HELIX 2 AA2 GLY A 34 GLU A 44 1 11 HELIX 3 AA3 ASN A 46 SER A 51 5 6 HELIX 4 AA4 SER A 66 ASN A 78 1 13 HELIX 5 AA5 SER A 113 GLY A 123 1 11 HELIX 6 AA6 ASN A 127 LEU A 131 5 5 HELIX 7 AA7 SER A 149 CYS A 163 1 15 HELIX 8 AA8 GLN A 164 SER A 169 1 6 HELIX 9 AA9 THR A 187 PHE A 192 5 6 HELIX 10 AB1 GLY A 206 TYR A 215 1 10 HELIX 11 AB2 THR A 254 ALA A 258 5 5 HELIX 12 AB3 GLY A 263 ASN A 268 1 6 HELIX 13 AB4 PRO A 269 VAL A 273 5 5 HELIX 14 AB5 ASN A 299 TYR A 314 1 16 HELIX 15 AB6 ASN A 327 HIS A 334 1 8 HELIX 16 AB7 THR A 340 ALA A 352 1 13 HELIX 17 AB8 ASN A 362 SER A 367 1 6 SHEET 1 AA1 2 VAL A 4 GLY A 8 0 SHEET 2 AA1 2 PHE A 28 VAL A 32 1 O SER A 29 N VAL A 4 SHEET 1 AA2 3 PHE A 58 SER A 61 0 SHEET 2 AA2 3 ALA A 286 GLY A 294 -1 O ASN A 290 N SER A 61 SHEET 3 AA2 3 LEU A 89 SER A 98 -1 N SER A 94 O THR A 289 SHEET 1 AA3 2 ASP A 111 LEU A 112 0 SHEET 2 AA3 2 LYS A 240 VAL A 241 1 O LYS A 240 N LEU A 112 SHEET 1 AA4 3 PHE A 199 ALA A 201 0 SHEET 2 AA4 3 GLN A 141 TYR A 144 1 N VAL A 142 O VAL A 200 SHEET 3 AA4 3 ARG A 220 VAL A 221 1 O VAL A 221 N VAL A 143 SHEET 1 AA5 2 LEU A 175 ALA A 176 0 SHEET 2 AA5 2 VAL A 179 PRO A 180 -1 O VAL A 179 N ALA A 176 SHEET 1 AA6 2 THR A 317 VAL A 319 0 SHEET 2 AA6 2 VAL A 322 GLN A 324 -1 O GLN A 324 N THR A 317 SSBOND 1 CYS A 118 CYS A 163 1555 1555 1.99 SSBOND 2 CYS A 296 CYS A 366 1555 1555 2.10 LINK C PCA A 1 N THR A 2 1555 1555 1.33 SITE 1 AC1 10 ALA A 9 SER A 10 LEU A 11 GLY A 34 SITE 2 AC1 10 SER A 35 ASP A 62 ARG A 145 SER A 149 SITE 3 AC1 10 GLY A 150 THR A 151 CRYST1 37.729 77.856 56.287 90.00 102.08 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026505 0.000000 0.005671 0.00000 SCALE2 0.000000 0.012844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018168 0.00000 HETATM 1 N PCA A 1 -0.332 5.359 4.259 1.00 8.94 N ANISOU 1 N PCA A 1 1051 1144 1202 114 -140 369 N HETATM 2 CA PCA A 1 -0.307 5.135 2.786 1.00 9.63 C ANISOU 2 CA PCA A 1 1265 1192 1202 150 -113 249 C HETATM 3 CB PCA A 1 -0.740 3.698 2.537 1.00 10.29 C ANISOU 3 CB PCA A 1 1458 1148 1303 141 -57 227 C HETATM 4 CG PCA A 1 -1.568 3.330 3.755 1.00 8.82 C ANISOU 4 CG PCA A 1 1105 1058 1188 106 -285 192 C HETATM 5 CD PCA A 1 -1.072 4.265 4.811 1.00 8.23 C ANISOU 5 CD PCA A 1 914 971 1243 79 -324 257 C HETATM 6 OE PCA A 1 -1.247 4.142 6.019 1.00 7.77 O ANISOU 6 OE PCA A 1 981 849 1122 -7 -272 205 O HETATM 7 C PCA A 1 -1.205 6.047 1.950 1.00 9.84 C ANISOU 7 C PCA A 1 1397 1224 1119 200 -86 287 C HETATM 8 O PCA A 1 -0.961 6.185 0.758 1.00 12.06 O ANISOU 8 O PCA A 1 1834 1448 1300 425 21 357 O HETATM 9 H PCA A 1 -0.122 4.603 4.678 1.00 10.73 H HETATM 10 HA PCA A 1 0.617 5.233 2.475 1.00 11.56 H HETATM 11 HB2 PCA A 1 -1.261 3.635 1.709 1.00 12.34 H HETATM 12 HB3 PCA A 1 0.042 3.112 2.466 1.00 12.34 H HETATM 13 HG2 PCA A 1 -2.525 3.440 3.577 1.00 10.59 H HETATM 14 HG3 PCA A 1 -1.393 2.402 4.020 1.00 10.59 H