HEADER OXIDOREDUCTASE 26-APR-16 5JK6 TITLE PHENYLALANINE HYDROXYLASE FROM DICTYOSTELIUM - APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANINE-4-HYDROXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-415; COMPND 5 SYNONYM: PAH,PHE-4-MONOOXYGENASE,TRYPTOPHAN 5-HYDROXYLASE,TRH, COMPND 6 TRYPTOPHAN 5-MONOOXYGENASE; COMPND 7 EC: 1.14.16.1,1.14.16.4; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 GENE: PAH, DDB_G0278781; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS KEYWDS PHENYALANINE HYDROXYLASE, DICTYOSTELIUM, ENZYME REGULATION, KEYWDS 2 TETRAHYDROBIOPTERIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.ZHUANG,K.H.LEE REVDAT 1 26-APR-17 5JK6 0 JRNL AUTH N.ZHUANG,K.H.LEE JRNL TITL PHENYLALANINE HYDROXYLASE FROM DICTYOSTELIUM - APO FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 49357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 2390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5038 - 5.3217 0.97 2829 154 0.1482 0.1851 REMARK 3 2 5.3217 - 4.2259 0.99 2846 137 0.1250 0.1394 REMARK 3 3 4.2259 - 3.6922 0.99 2862 124 0.1310 0.1795 REMARK 3 4 3.6922 - 3.3549 0.98 2801 148 0.1561 0.1897 REMARK 3 5 3.3549 - 3.1145 0.98 2815 135 0.1768 0.2464 REMARK 3 6 3.1145 - 2.9310 0.98 2804 124 0.1726 0.2100 REMARK 3 7 2.9310 - 2.7843 0.98 2758 161 0.1750 0.2195 REMARK 3 8 2.7843 - 2.6631 0.97 2766 137 0.1738 0.2351 REMARK 3 9 2.6631 - 2.5606 0.97 2815 120 0.1731 0.2451 REMARK 3 10 2.5606 - 2.4723 0.97 2729 147 0.1711 0.2382 REMARK 3 11 2.4723 - 2.3950 0.97 2741 166 0.1806 0.2413 REMARK 3 12 2.3950 - 2.3265 0.96 2730 146 0.1793 0.2589 REMARK 3 13 2.3265 - 2.2653 0.96 2696 141 0.1771 0.2578 REMARK 3 14 2.2653 - 2.2100 0.96 2743 127 0.1960 0.2832 REMARK 3 15 2.2100 - 2.1598 0.96 2746 135 0.1890 0.2522 REMARK 3 16 2.1598 - 2.1138 0.95 2727 158 0.1896 0.2540 REMARK 3 17 2.1138 - 2.0715 0.91 2559 130 0.1992 0.2565 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6630 REMARK 3 ANGLE : 1.010 8996 REMARK 3 CHIRALITY : 0.039 956 REMARK 3 PLANARITY : 0.005 1171 REMARK 3 DIHEDRAL : 14.030 2509 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 8.5062 -2.6287 25.9122 REMARK 3 T TENSOR REMARK 3 T11: 0.2121 T22: 0.1788 REMARK 3 T33: 0.2272 T12: 0.0017 REMARK 3 T13: 0.0085 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.5279 L22: 0.5034 REMARK 3 L33: 0.8561 L12: -0.0510 REMARK 3 L13: 0.2880 L23: -0.2880 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: -0.0534 S13: -0.0305 REMARK 3 S21: 0.0260 S22: 0.0465 S23: 0.0523 REMARK 3 S31: -0.0121 S32: -0.1257 S33: -0.0473 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49361 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26%(W/V) PEG 2000, 0.06 M PIPES,, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.65450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 THR A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 GLN A 8 REMARK 465 GLY A 9 REMARK 465 GLN A 10 REMARK 465 GLY A 11 REMARK 465 ILE A 12 REMARK 465 ILE A 13 REMARK 465 PRO A 14 REMARK 465 LYS A 415 REMARK 465 MET B -22 REMARK 465 GLY B -21 REMARK 465 SER B -20 REMARK 465 SER B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 SER B -12 REMARK 465 SER B -11 REMARK 465 GLY B -10 REMARK 465 LEU B -9 REMARK 465 VAL B -8 REMARK 465 PRO B -7 REMARK 465 ARG B -6 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 HIS B -3 REMARK 465 MET B -2 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 SER B 3 REMARK 465 ASN B 4 REMARK 465 THR B 5 REMARK 465 ASN B 6 REMARK 465 SER B 7 REMARK 465 GLN B 8 REMARK 465 GLY B 9 REMARK 465 GLN B 10 REMARK 465 GLY B 11 REMARK 465 ILE B 12 REMARK 465 ILE B 13 REMARK 465 PRO B 14 REMARK 465 VAL B 123 REMARK 465 LEU B 124 REMARK 465 GLU B 125 REMARK 465 MET B 126 REMARK 465 GLY B 127 REMARK 465 SER B 128 REMARK 465 ASP B 129 REMARK 465 LEU B 130 REMARK 465 THR B 131 REMARK 465 SER B 132 REMARK 465 ASP B 133 REMARK 465 HIS B 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 GLN B 15 CD OE1 NE2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 TYR B 265 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO B 267 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 802 O HOH A 838 2.04 REMARK 500 O HOH A 778 O HOH A 848 2.07 REMARK 500 O HOH B 661 O HOH B 769 2.07 REMARK 500 O ASN A 211 O HOH A 601 2.10 REMARK 500 O2 PIN A 501 O HOH A 602 2.12 REMARK 500 O HOH A 737 O HOH A 857 2.14 REMARK 500 O HOH B 685 O HOH B 781 2.14 REMARK 500 O HOH A 665 O HOH A 765 2.15 REMARK 500 O HOH B 707 O HOH B 771 2.15 REMARK 500 OE2 GLU B 202 O HOH B 602 2.15 REMARK 500 O HOH A 848 O HOH A 856 2.16 REMARK 500 O HOH B 775 O HOH B 786 2.17 REMARK 500 NH1 ARG B 111 O HOH B 603 2.18 REMARK 500 OE1 GLU B 224 O HOH B 604 2.18 REMARK 500 O HOH B 762 O HOH B 780 2.18 REMARK 500 O HOH B 769 O HOH B 776 2.18 REMARK 500 O HOH A 832 O HOH B 713 2.18 REMARK 500 OE2 GLU A 53 O HOH A 603 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 267 C - N - CA ANGL. DEV. = 24.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 316 -80.35 -126.67 REMARK 500 ASN A 356 112.26 -160.03 REMARK 500 THR B 59 -72.16 -112.68 REMARK 500 SER B 138 38.04 -82.07 REMARK 500 GLN B 234 -78.44 -103.64 REMARK 500 PRO B 263 -93.81 -68.77 REMARK 500 PRO B 267 81.69 158.45 REMARK 500 THR B 316 -81.49 -124.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 273 NE2 REMARK 620 2 HIS A 278 NE2 95.1 REMARK 620 3 GLU A 318 OE1 103.1 102.0 REMARK 620 4 GLU A 318 OE2 155.5 98.0 54.0 REMARK 620 5 HOH A 712 O 94.9 169.5 78.7 73.8 REMARK 620 6 HOH A 765 O 98.6 110.0 139.2 96.2 65.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 273 NE2 REMARK 620 2 HIS B 278 NE2 93.8 REMARK 620 3 GLU B 318 OE1 101.5 97.8 REMARK 620 4 GLU B 318 OE2 156.7 93.5 55.5 REMARK 620 5 HOH B 691 O 91.3 85.2 166.5 111.3 REMARK 620 6 HOH B 706 O 87.3 163.8 97.8 91.9 78.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PIN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PIN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JK5 RELATED DB: PDB REMARK 900 RELATED ID: 5JK8 RELATED DB: PDB DBREF 5JK6 A 1 415 UNP Q54XS1 PH4H_DICDI 1 415 DBREF 5JK6 B 1 415 UNP Q54XS1 PH4H_DICDI 1 415 SEQADV 5JK6 MET A -22 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 GLY A -21 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 SER A -20 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 SER A -19 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 HIS A -18 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 HIS A -17 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 HIS A -16 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 HIS A -15 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 HIS A -14 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 HIS A -13 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 SER A -12 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 SER A -11 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 GLY A -10 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 LEU A -9 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 VAL A -8 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 PRO A -7 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 ARG A -6 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 GLY A -5 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 SER A -4 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 HIS A -3 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 MET A -2 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 ALA A -1 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 SER A 0 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 MET B -22 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 GLY B -21 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 SER B -20 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 SER B -19 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 HIS B -18 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 HIS B -17 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 HIS B -16 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 HIS B -15 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 HIS B -14 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 HIS B -13 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 SER B -12 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 SER B -11 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 GLY B -10 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 LEU B -9 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 VAL B -8 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 PRO B -7 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 ARG B -6 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 GLY B -5 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 SER B -4 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 HIS B -3 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 MET B -2 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 ALA B -1 UNP Q54XS1 EXPRESSION TAG SEQADV 5JK6 SER B 0 UNP Q54XS1 EXPRESSION TAG SEQRES 1 A 438 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 438 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET GLU SER SEQRES 3 A 438 ASN THR ASN SER GLN GLY GLN GLY ILE ILE PRO GLN SER SEQRES 4 A 438 TYR HIS SER SER ILE PHE PHE SER ILE SER LYS GLY SER SEQRES 5 A 438 ASP LYS ILE GLY GLY LEU LEU GLU TYR LEU GLU ILE ILE SEQRES 6 A 438 LYS LYS HIS ASN ILE ASN ILE THR ARG ILE GLU SER ARG SEQRES 7 A 438 PRO SER LYS THR GLU LYS LYS ASP TYR ASP PHE PHE LEU SEQRES 8 A 438 ASP LEU GLU TYR PRO THR GLU ASN ASN LYS GLU VAL GLU SEQRES 9 A 438 LYS VAL ILE LYS ASP LEU GLU GLU LYS GLY VAL LYS ALA SEQRES 10 A 438 THR THR LEU GLN GLU SER SER ASN GLN THR TYR ALA PRO SEQRES 11 A 438 TRP PHE PRO ARG LYS ILE SER ASP LEU ASP LEU PHE ALA SEQRES 12 A 438 ASN LYS VAL LEU GLU MET GLY SER ASP LEU THR SER ASP SEQRES 13 A 438 HIS PRO GLY ALA SER ASP PRO VAL TYR ARG GLU ARG ARG SEQRES 14 A 438 ARG GLU ILE ALA LYS ILE ALA SER THR TYR LYS HIS GLY SEQRES 15 A 438 ASP GLU ILE PRO ARG ILE ASP TYR THR GLU GLU GLU ILE SEQRES 16 A 438 LYS THR TRP GLY VAL VAL TYR ASN ARG LEU LYS GLU LEU SEQRES 17 A 438 PHE PRO THR ASN ALA CYS HIS GLN HIS ALA TYR ILE PHE SEQRES 18 A 438 PRO LEU LEU GLU GLN ASN CYS GLY TYR SER PRO ASP ASN SEQRES 19 A 438 ILE PRO GLN LEU GLN ASP ILE SER ASN PHE LEU GLN GLU SEQRES 20 A 438 CYS THR GLY TRP ARG ILE ARG PRO VAL GLN GLY LEU LEU SEQRES 21 A 438 SER ALA ARG ASP PHE LEU ASN GLY LEU ALA PHE ARG VAL SEQRES 22 A 438 PHE HIS ALA THR GLN TYR ILE ARG HIS PRO SER VAL PRO SEQRES 23 A 438 LEU TYR THR PRO GLU PRO ASP CYS CYS HIS GLU LEU LEU SEQRES 24 A 438 GLY HIS VAL PRO LEU LEU ALA ASP PRO ASP PHE ALA ASP SEQRES 25 A 438 PHE SER GLN GLU ILE GLY LEU ALA SER ILE GLY ALA SER SEQRES 26 A 438 ASP GLU ASP ILE GLN LEU LEU SER THR CYS TYR TRP PHE SEQRES 27 A 438 THR VAL GLU PHE GLY LEU CYS LYS GLU GLY ASP THR ILE SEQRES 28 A 438 ARG ALA TYR GLY ALA GLY ILE LEU SER SER THR GLY GLU SEQRES 29 A 438 MET GLU HIS PHE LEU THR ASP LYS ALA LYS LYS LEU PRO SEQRES 30 A 438 PHE ASN PRO PHE ASP ALA CYS ASN THR GLU TYR PRO ILE SEQRES 31 A 438 THR THR PHE GLN PRO LEU TYR TYR VAL ALA GLU SER PHE SEQRES 32 A 438 GLN LYS ALA LYS GLU GLN MET ARG GLN PHE ALA ASP SER SEQRES 33 A 438 PHE LYS LYS PRO PHE SER ILE ARG TYR ASN PRO TYR THR SEQRES 34 A 438 GLN SER ILE GLU ILE LEU ASP ASN LYS SEQRES 1 B 438 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 438 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET GLU SER SEQRES 3 B 438 ASN THR ASN SER GLN GLY GLN GLY ILE ILE PRO GLN SER SEQRES 4 B 438 TYR HIS SER SER ILE PHE PHE SER ILE SER LYS GLY SER SEQRES 5 B 438 ASP LYS ILE GLY GLY LEU LEU GLU TYR LEU GLU ILE ILE SEQRES 6 B 438 LYS LYS HIS ASN ILE ASN ILE THR ARG ILE GLU SER ARG SEQRES 7 B 438 PRO SER LYS THR GLU LYS LYS ASP TYR ASP PHE PHE LEU SEQRES 8 B 438 ASP LEU GLU TYR PRO THR GLU ASN ASN LYS GLU VAL GLU SEQRES 9 B 438 LYS VAL ILE LYS ASP LEU GLU GLU LYS GLY VAL LYS ALA SEQRES 10 B 438 THR THR LEU GLN GLU SER SER ASN GLN THR TYR ALA PRO SEQRES 11 B 438 TRP PHE PRO ARG LYS ILE SER ASP LEU ASP LEU PHE ALA SEQRES 12 B 438 ASN LYS VAL LEU GLU MET GLY SER ASP LEU THR SER ASP SEQRES 13 B 438 HIS PRO GLY ALA SER ASP PRO VAL TYR ARG GLU ARG ARG SEQRES 14 B 438 ARG GLU ILE ALA LYS ILE ALA SER THR TYR LYS HIS GLY SEQRES 15 B 438 ASP GLU ILE PRO ARG ILE ASP TYR THR GLU GLU GLU ILE SEQRES 16 B 438 LYS THR TRP GLY VAL VAL TYR ASN ARG LEU LYS GLU LEU SEQRES 17 B 438 PHE PRO THR ASN ALA CYS HIS GLN HIS ALA TYR ILE PHE SEQRES 18 B 438 PRO LEU LEU GLU GLN ASN CYS GLY TYR SER PRO ASP ASN SEQRES 19 B 438 ILE PRO GLN LEU GLN ASP ILE SER ASN PHE LEU GLN GLU SEQRES 20 B 438 CYS THR GLY TRP ARG ILE ARG PRO VAL GLN GLY LEU LEU SEQRES 21 B 438 SER ALA ARG ASP PHE LEU ASN GLY LEU ALA PHE ARG VAL SEQRES 22 B 438 PHE HIS ALA THR GLN TYR ILE ARG HIS PRO SER VAL PRO SEQRES 23 B 438 LEU TYR THR PRO GLU PRO ASP CYS CYS HIS GLU LEU LEU SEQRES 24 B 438 GLY HIS VAL PRO LEU LEU ALA ASP PRO ASP PHE ALA ASP SEQRES 25 B 438 PHE SER GLN GLU ILE GLY LEU ALA SER ILE GLY ALA SER SEQRES 26 B 438 ASP GLU ASP ILE GLN LEU LEU SER THR CYS TYR TRP PHE SEQRES 27 B 438 THR VAL GLU PHE GLY LEU CYS LYS GLU GLY ASP THR ILE SEQRES 28 B 438 ARG ALA TYR GLY ALA GLY ILE LEU SER SER THR GLY GLU SEQRES 29 B 438 MET GLU HIS PHE LEU THR ASP LYS ALA LYS LYS LEU PRO SEQRES 30 B 438 PHE ASN PRO PHE ASP ALA CYS ASN THR GLU TYR PRO ILE SEQRES 31 B 438 THR THR PHE GLN PRO LEU TYR TYR VAL ALA GLU SER PHE SEQRES 32 B 438 GLN LYS ALA LYS GLU GLN MET ARG GLN PHE ALA ASP SER SEQRES 33 B 438 PHE LYS LYS PRO PHE SER ILE ARG TYR ASN PRO TYR THR SEQRES 34 B 438 GLN SER ILE GLU ILE LEU ASP ASN LYS HET PIN A 501 18 HET FE A 502 1 HET PIN B 501 18 HET FE B 502 1 HETNAM PIN PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID) HETNAM FE FE (III) ION HETSYN PIN PIPES; 1,4-PIPERAZINEDIETHANESULFONIC ACID FORMUL 3 PIN 2(C8 H18 N2 O6 S2) FORMUL 4 FE 2(FE 3+) FORMUL 7 HOH *455(H2 O) HELIX 1 AA1 LYS A 31 ASN A 46 1 16 HELIX 2 AA2 LYS A 78 GLU A 89 1 12 HELIX 3 AA3 LYS A 112 ALA A 120 5 9 HELIX 4 AA4 ASP A 139 TYR A 156 1 18 HELIX 5 AA5 THR A 168 ALA A 190 1 23 HELIX 6 AA6 CYS A 191 CYS A 205 1 15 HELIX 7 AA7 GLN A 214 GLY A 227 1 14 HELIX 8 AA8 SER A 238 ALA A 247 1 10 HELIX 9 AA9 ASP A 270 GLY A 277 1 8 HELIX 10 AB1 HIS A 278 ALA A 283 1 6 HELIX 11 AB2 ASP A 284 ILE A 299 1 16 HELIX 12 AB3 SER A 302 PHE A 315 1 14 HELIX 13 AB4 GLY A 332 SER A 337 1 6 HELIX 14 AB5 SER A 338 LEU A 346 1 9 HELIX 15 AB6 ASN A 356 CYS A 361 1 6 HELIX 16 AB7 SER A 379 PHE A 394 1 16 HELIX 17 AB8 LYS B 31 ASN B 46 1 16 HELIX 18 AB9 LYS B 78 LYS B 90 1 13 HELIX 19 AC1 LYS B 112 ALA B 120 5 9 HELIX 20 AC2 ASP B 139 THR B 155 1 17 HELIX 21 AC3 THR B 168 ALA B 190 1 23 HELIX 22 AC4 CYS B 191 CYS B 205 1 15 HELIX 23 AC5 GLN B 214 GLY B 227 1 14 HELIX 24 AC6 SER B 238 PHE B 248 1 11 HELIX 25 AC7 ASP B 270 GLY B 277 1 8 HELIX 26 AC8 HIS B 278 ALA B 283 1 6 HELIX 27 AC9 ASP B 284 ILE B 299 1 16 HELIX 28 AD1 SER B 302 PHE B 315 1 14 HELIX 29 AD2 GLY B 332 SER B 337 1 6 HELIX 30 AD3 SER B 338 LEU B 346 1 9 HELIX 31 AD4 ASN B 356 CYS B 361 1 6 HELIX 32 AD5 SER B 379 ASP B 392 1 14 SHEET 1 AA1 5 ILE A 49 PRO A 56 0 SHEET 2 AA1 5 ASP A 63 TYR A 72 -1 O ASP A 65 N ARG A 55 SHEET 3 AA1 5 TYR A 17 SER A 26 -1 N PHE A 23 O PHE A 66 SHEET 4 AA1 5 THR A 95 GLN A 98 -1 O LEU A 97 N SER A 20 SHEET 5 AA1 5 ALA A 106 PRO A 107 1 O ALA A 106 N GLN A 98 SHEET 1 AA2 2 ARG A 229 PRO A 232 0 SHEET 2 AA2 2 VAL A 250 ALA A 253 1 O PHE A 251 N ARG A 229 SHEET 1 AA3 4 THR A 327 ALA A 330 0 SHEET 2 AA3 4 LEU A 321 GLU A 324 -1 N CYS A 322 O ARG A 329 SHEET 3 AA3 4 LEU A 373 ALA A 377 1 O ALA A 377 N LEU A 321 SHEET 4 AA3 4 LYS A 351 PRO A 354 1 N LEU A 353 O VAL A 376 SHEET 1 AA4 2 PHE A 398 ASN A 403 0 SHEET 2 AA4 2 SER A 408 ASP A 413 -1 O GLU A 410 N ARG A 401 SHEET 1 AA5 5 ILE B 49 PRO B 56 0 SHEET 2 AA5 5 ASP B 63 TYR B 72 -1 O ASP B 69 N ARG B 51 SHEET 3 AA5 5 TYR B 17 SER B 26 -1 N PHE B 23 O PHE B 66 SHEET 4 AA5 5 THR B 95 GLN B 98 -1 O THR B 95 N PHE B 22 SHEET 5 AA5 5 ALA B 106 PRO B 107 1 O ALA B 106 N GLN B 98 SHEET 1 AA6 2 ARG B 229 PRO B 232 0 SHEET 2 AA6 2 VAL B 250 ALA B 253 1 O PHE B 251 N ARG B 229 SHEET 1 AA7 4 THR B 327 ALA B 330 0 SHEET 2 AA7 4 LEU B 321 GLU B 324 -1 N CYS B 322 O ARG B 329 SHEET 3 AA7 4 LEU B 373 ALA B 377 1 O ALA B 377 N LEU B 321 SHEET 4 AA7 4 LYS B 351 PRO B 354 1 N LEU B 353 O VAL B 376 SHEET 1 AA8 2 SER B 399 ASN B 403 0 SHEET 2 AA8 2 SER B 408 LEU B 412 -1 O GLU B 410 N ARG B 401 SSBOND 1 CYS A 191 CYS A 322 1555 1555 2.04 SSBOND 2 CYS B 191 CYS B 322 1555 1555 2.04 LINK NE2 HIS A 273 FE FE A 502 1555 1555 2.05 LINK NE2 HIS A 278 FE FE A 502 1555 1555 2.03 LINK OE1 GLU A 318 FE FE A 502 1555 1555 2.51 LINK OE2 GLU A 318 FE FE A 502 1555 1555 2.24 LINK NE2 HIS B 273 FE FE B 502 1555 1555 2.03 LINK NE2 HIS B 278 FE FE B 502 1555 1555 2.05 LINK OE1 GLU B 318 FE FE B 502 1555 1555 2.34 LINK OE2 GLU B 318 FE FE B 502 1555 1555 2.32 LINK FE FE A 502 O HOH A 712 1555 1555 2.37 LINK FE FE A 502 O HOH A 765 1555 1555 1.81 LINK FE FE B 502 O HOH B 691 1555 1555 2.06 LINK FE FE B 502 O HOH B 706 1555 1555 2.07 SITE 1 AC1 9 THR A 226 ARG A 249 PRO A 285 ASP A 289 SITE 2 AC1 9 ARG A 388 HOH A 602 ASN B 403 TYR B 405 SITE 3 AC1 9 THR B 406 SITE 1 AC2 5 HIS A 273 HIS A 278 GLU A 318 HOH A 712 SITE 2 AC2 5 HOH A 765 SITE 1 AC3 14 LYS A 58 ASN A 403 TYR A 405 CYS B 225 SITE 2 AC3 14 THR B 226 ARG B 249 PRO B 285 ASP B 289 SITE 3 AC3 14 LYS B 384 ARG B 388 HOH B 613 HOH B 614 SITE 4 AC3 14 HOH B 616 HOH B 631 SITE 1 AC4 5 HIS B 273 HIS B 278 GLU B 318 HOH B 691 SITE 2 AC4 5 HOH B 706 CRYST1 70.871 85.309 74.913 90.00 110.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014110 0.000000 0.005148 0.00000 SCALE2 0.000000 0.011722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014209 0.00000