HEADER HYDROLASE 26-APR-16 5JKN TITLE CRYSTAL STRUCTURE OF DEUBIQUITINASE MINDY-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FAM63A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FAM63A, KIAA1390; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS HYDROLASE, CYSTEINE PROTEASE, ISOPEPTIDASE AND UBIQUITIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.A.ABDUL REHMAN,Y.KULATHU REVDAT 5 01-MAY-24 5JKN 1 REMARK REVDAT 4 16-OCT-19 5JKN 1 REMARK REVDAT 3 20-JUL-16 5JKN 1 JRNL REVDAT 2 29-JUN-16 5JKN 1 JRNL REVDAT 1 22-JUN-16 5JKN 0 JRNL AUTH S.A.ABDUL REHMAN,Y.A.KRISTARIYANTO,S.Y.CHOI,P.J.NKOSI, JRNL AUTH 2 S.WEIDLICH,K.LABIB,K.HOFMANN,Y.KULATHU JRNL TITL MINDY-1 IS A MEMBER OF AN EVOLUTIONARILY CONSERVED AND JRNL TITL 2 STRUCTURALLY DISTINCT NEW FAMILY OF DEUBIQUITINATING JRNL TITL 3 ENZYMES. JRNL REF MOL.CELL V. 63 146 2016 JRNL REFN ISSN 1097-2765 JRNL PMID 27292798 JRNL DOI 10.1016/J.MOLCEL.2016.05.009 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 99.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 16430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 856 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1169 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3840 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 118.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.56000 REMARK 3 B22 (A**2) : 5.56000 REMARK 3 B33 (A**2) : -11.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.296 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.260 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.243 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.275 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2072 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1907 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2826 ; 1.204 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4392 ; 0.882 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 6.245 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;35.913 ;25.474 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 325 ;15.245 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;10.037 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2348 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 474 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1024 ; 5.779 ;11.731 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1023 ; 5.759 ;11.727 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1277 ; 9.334 ;17.575 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1278 ; 9.330 ;17.581 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1048 ; 5.572 ;12.278 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1044 ; 5.567 ;12.285 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1543 ; 9.207 ;18.219 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2199 ;12.826 ;92.873 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2200 ;12.824 ;92.901 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JKN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220438. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93927 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17325 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 99.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PARTIAL MODEL OBATINED FROM EXPERIMENTAL PHASING REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES-NA PH 7.5, 200MM NACL AND REMARK 280 25% PEG4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.56150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.28075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 123.84225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.56150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 123.84225 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.28075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 96 REMARK 465 PRO A 97 REMARK 465 LEU A 98 REMARK 465 GLY A 99 REMARK 465 SER A 100 REMARK 465 PRO A 101 REMARK 465 GLU A 102 REMARK 465 PHE A 103 REMARK 465 PRO A 104 REMARK 465 GLY A 105 REMARK 465 ARG A 106 REMARK 465 LEU A 107 REMARK 465 GLU A 108 REMARK 465 MET A 109 REMARK 465 GLU A 110 REMARK 465 LYS A 182 REMARK 465 SER A 183 REMARK 465 GLU A 184 REMARK 465 LEU A 370 REMARK 465 GLY A 371 REMARK 465 LYS A 372 REMARK 465 GLY A 373 REMARK 465 PRO A 374 REMARK 465 GLY A 375 REMARK 465 ALA A 376 REMARK 465 GLU A 377 REMARK 465 GLY A 378 REMARK 465 GLY A 379 REMARK 465 SER A 380 REMARK 465 GLY A 381 REMARK 465 SER A 382 REMARK 465 PRO A 383 REMARK 465 GLU A 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 122 CD CE NZ REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 LYS A 327 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 112 -70.56 -61.27 REMARK 500 GLN A 187 -60.99 -91.56 REMARK 500 VAL A 253 -61.58 -90.24 REMARK 500 THR A 290 44.33 -107.12 REMARK 500 LEU A 294 111.83 -163.10 REMARK 500 ASN A 318 49.32 36.12 REMARK 500 VAL A 346 -51.19 -125.22 REMARK 500 ASP A 354 136.31 -170.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 403 DBREF 5JKN A 110 384 UNP Q8N5J2 FA63A_HUMAN 110 384 SEQADV 5JKN GLY A 96 UNP Q8N5J2 EXPRESSION TAG SEQADV 5JKN PRO A 97 UNP Q8N5J2 EXPRESSION TAG SEQADV 5JKN LEU A 98 UNP Q8N5J2 EXPRESSION TAG SEQADV 5JKN GLY A 99 UNP Q8N5J2 EXPRESSION TAG SEQADV 5JKN SER A 100 UNP Q8N5J2 EXPRESSION TAG SEQADV 5JKN PRO A 101 UNP Q8N5J2 EXPRESSION TAG SEQADV 5JKN GLU A 102 UNP Q8N5J2 EXPRESSION TAG SEQADV 5JKN PHE A 103 UNP Q8N5J2 EXPRESSION TAG SEQADV 5JKN PRO A 104 UNP Q8N5J2 EXPRESSION TAG SEQADV 5JKN GLY A 105 UNP Q8N5J2 EXPRESSION TAG SEQADV 5JKN ARG A 106 UNP Q8N5J2 EXPRESSION TAG SEQADV 5JKN LEU A 107 UNP Q8N5J2 EXPRESSION TAG SEQADV 5JKN GLU A 108 UNP Q8N5J2 EXPRESSION TAG SEQADV 5JKN MET A 109 UNP Q8N5J2 EXPRESSION TAG SEQRES 1 A 289 GLY PRO LEU GLY SER PRO GLU PHE PRO GLY ARG LEU GLU SEQRES 2 A 289 MET GLU PRO ASP PHE TYR CYS VAL LYS TRP ILE PRO TRP SEQRES 3 A 289 LYS GLY GLU GLN THR PRO ILE ILE THR GLN SER THR ASN SEQRES 4 A 289 GLY PRO CYS PRO LEU LEU ALA ILE MET ASN ILE LEU PHE SEQRES 5 A 289 LEU GLN TRP LYS VAL LYS LEU PRO PRO GLN LYS GLU VAL SEQRES 6 A 289 ILE THR SER ASP GLU LEU MET ALA HIS LEU GLY ASN CYS SEQRES 7 A 289 LEU LEU SER ILE LYS PRO GLN GLU LYS SER GLU GLY LEU SEQRES 8 A 289 GLN LEU ASN PHE GLN GLN ASN VAL ASP ASP ALA MET THR SEQRES 9 A 289 VAL LEU PRO LYS LEU ALA THR GLY LEU ASP VAL ASN VAL SEQRES 10 A 289 ARG PHE THR GLY VAL SER ASP PHE GLU TYR THR PRO GLU SEQRES 11 A 289 CYS SER VAL PHE ASP LEU LEU GLY ILE PRO LEU TYR HIS SEQRES 12 A 289 GLY TRP LEU VAL ASP PRO GLN SER PRO GLU ALA VAL ARG SEQRES 13 A 289 ALA VAL GLY LYS LEU SER TYR ASN GLN LEU VAL GLU ARG SEQRES 14 A 289 ILE ILE THR CYS LYS HIS SER SER ASP THR ASN LEU VAL SEQRES 15 A 289 THR GLU GLY LEU ILE ALA GLU GLN PHE LEU GLU THR THR SEQRES 16 A 289 ALA ALA GLN LEU THR TYR HIS GLY LEU CYS GLU LEU THR SEQRES 17 A 289 ALA ALA ALA LYS GLU GLY GLU LEU SER VAL PHE PHE ARG SEQRES 18 A 289 ASN ASN HIS PHE SER THR MET THR LYS HIS LYS SER HIS SEQRES 19 A 289 LEU TYR LEU LEU VAL THR ASP GLN GLY PHE LEU GLN GLU SEQRES 20 A 289 GLU GLN VAL VAL TRP GLU SER LEU HIS ASN VAL ASP GLY SEQRES 21 A 289 ASP SER CYS PHE CYS ASP SER ASP PHE HIS LEU SER HIS SEQRES 22 A 289 SER LEU GLY LYS GLY PRO GLY ALA GLU GLY GLY SER GLY SEQRES 23 A 289 SER PRO GLU HET PEG A 401 7 HET PO4 A 402 5 HET HG A 403 1 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PO4 PHOSPHATE ION HETNAM HG MERCURY (II) ION FORMUL 2 PEG C4 H10 O3 FORMUL 3 PO4 O4 P 3- FORMUL 4 HG HG 2+ HELIX 1 AA1 PRO A 138 GLN A 149 1 12 HELIX 2 AA2 SER A 163 SER A 176 1 14 HELIX 3 AA3 LEU A 186 LEU A 201 1 16 HELIX 4 AA4 PRO A 202 ALA A 205 5 4 HELIX 5 AA5 GLU A 225 GLY A 233 1 9 HELIX 6 AA6 SER A 246 GLY A 254 1 9 HELIX 7 AA7 SER A 257 HIS A 270 1 14 HELIX 8 AA8 ASP A 273 THR A 290 1 18 HELIX 9 AA9 THR A 295 ALA A 306 1 12 HELIX 10 AB1 ASP A 336 LEU A 340 5 5 SHEET 1 AA1 3 GLU A 124 THR A 130 0 SHEET 2 AA1 3 PHE A 113 TRP A 121 -1 N ILE A 119 O THR A 126 SHEET 3 AA1 3 VAL A 160 THR A 162 -1 O ILE A 161 N TYR A 114 SHEET 1 AA2 6 LEU A 236 HIS A 238 0 SHEET 2 AA2 6 LEU A 311 ARG A 316 1 O PHE A 315 N TYR A 237 SHEET 3 AA2 6 HIS A 319 HIS A 326 -1 O MET A 323 N SER A 312 SHEET 4 AA2 6 HIS A 329 LEU A 333 -1 O HIS A 329 N HIS A 326 SHEET 5 AA2 6 TRP A 347 SER A 349 -1 O GLU A 348 N LEU A 332 SHEET 6 AA2 6 PHE A 359 CYS A 360 -1 O CYS A 360 N TRP A 347 LINK SG CYS A 226 HG HG A 403 1555 1555 2.55 SITE 1 AC1 3 VAL A 210 TYR A 258 ASN A 318 SITE 1 AC2 4 PHE A 314 ARG A 316 SER A 321 LEU A 332 SITE 1 AC3 1 CYS A 226 CRYST1 99.671 99.671 165.123 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010033 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006056 0.00000