HEADER HYDROLASE/REPLICATION 26-APR-16 5JKR TITLE VACCINIA VIRUS D4/A20(1-50)W43A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL-DNA GLYCOSYLASE; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: UDG; COMPND 5 EC: 3.2.2.27; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA POLYMERASE PROCESSIVITY FACTOR COMPONENT A20; COMPND 9 CHAIN: D, C; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 OTHER_DETAILS: N-TERMINAL RESIDUES 1-50 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS COPENHAGEN; SOURCE 3 ORGANISM_TAXID: 10249; SOURCE 4 GENE: UNG, D4R; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: VACCINIA VIRUS COPENHAGEN; SOURCE 9 ORGANISM_COMMON: VACV; SOURCE 10 ORGANISM_TAXID: 10249; SOURCE 11 GENE: A20R; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS DNA POLYMERASE PROCESSIVITY FACTOR, DNA BINDING, DNA POLYMERASE KEYWDS 2 BINDING, HYDROLASE-REPLICATION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.CONTESTO-RICHEFEU,N.TARBOURIECH,X.BRAZZOLOTTO,W.P.BURMEISTER, AUTHOR 2 C.N.PEYREFITTE,F.ISENI REVDAT 4 10-JAN-24 5JKR 1 REMARK REVDAT 3 06-SEP-17 5JKR 1 REMARK REVDAT 2 28-SEP-16 5JKR 1 JRNL REVDAT 1 14-SEP-16 5JKR 0 JRNL AUTH C.CONTESTO-RICHEFEU,N.TARBOURIECH,X.BRAZZOLOTTO, JRNL AUTH 2 W.P.BURMEISTER,C.N.PEYREFITTE,F.ISENI JRNL TITL STRUCTURAL ANALYSIS OF POINT MUTATIONS AT THE VACCINIA VIRUS JRNL TITL 2 A20/D4 INTERFACE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 687 2016 JRNL REFN ESSN 2053-230X JRNL PMID 27599859 JRNL DOI 10.1107/S2053230X16011778 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 21877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1162 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1523 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4335 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.532 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.297 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.241 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.915 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4469 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4222 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6074 ; 1.848 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9756 ; 1.072 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 538 ; 7.605 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;37.793 ;24.516 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 767 ;17.861 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.941 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 684 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4907 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 987 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2164 ; 5.315 ; 6.321 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2163 ; 5.315 ; 6.319 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2698 ; 7.760 ; 9.459 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2699 ; 7.758 ; 9.461 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2305 ; 5.358 ; 6.716 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2281 ; 5.191 ; 6.689 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3340 ; 7.957 ; 9.824 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5024 ;10.877 ;50.266 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5019 ;10.817 ;50.259 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 107 REMARK 200 PH : 8.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23077 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 48.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4ODA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE PH 8.9, 1.5M AMMONIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.57000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.14000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 97.14000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.57000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -13 REMARK 465 GLY B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 SER B -3 REMARK 465 GLY D -1 REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 GLN A -2 REMARK 465 ASP A -1 REMARK 465 GLY C -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B -2 CB CG CD OE1 NE2 REMARK 470 ARG B 185 CD NE CZ NH1 NH2 REMARK 470 ARG B 187 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 185 CB CG CD NE CZ NH1 NH2 REMARK 470 ASP A 186 CB CG OD1 OD2 REMARK 470 ARG A 187 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 68 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 9 127.50 -33.48 REMARK 500 TYR B 11 -42.07 74.17 REMARK 500 ASP B 18 -38.66 -36.52 REMARK 500 PHE B 79 -16.93 74.49 REMARK 500 LEU B 99 -74.85 -56.31 REMARK 500 ASP B 138 -71.61 -26.36 REMARK 500 GLU B 171 -74.92 -77.49 REMARK 500 THR B 175 109.66 -51.10 REMARK 500 ALA B 183 27.25 -78.46 REMARK 500 MET D 1 0.16 56.84 REMARK 500 SER D 23 20.37 -141.33 REMARK 500 ALA D 43 -37.00 86.06 REMARK 500 ALA A 9 139.36 -39.56 REMARK 500 TYR A 11 -44.67 80.77 REMARK 500 ASP A 73 15.67 83.82 REMARK 500 PHE A 79 -12.65 74.10 REMARK 500 LEU A 127 131.97 -38.07 REMARK 500 ASP A 138 -66.81 -20.84 REMARK 500 THR A 175 100.25 -55.01 REMARK 500 ALA A 183 -75.85 -34.74 REMARK 500 ASP A 186 40.24 77.42 REMARK 500 MET C 1 13.37 59.35 REMARK 500 THR C 2 -6.56 -141.47 REMARK 500 ASP C 24 76.57 -65.71 REMARK 500 ALA C 43 -37.73 77.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 436 DISTANCE = 6.02 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 DBREF 5JKR B 1 218 UNP P20536 UNG_VACCC 1 218 DBREF 5JKR D 1 50 UNP P20995 A20_VACCC 1 50 DBREF 5JKR A 1 218 UNP P20536 UNG_VACCC 1 218 DBREF 5JKR C 1 50 UNP P20995 A20_VACCC 1 50 SEQADV 5JKR MET B -13 UNP P20536 INITIATING METHIONINE SEQADV 5JKR GLY B -12 UNP P20536 EXPRESSION TAG SEQADV 5JKR SER B -11 UNP P20536 EXPRESSION TAG SEQADV 5JKR SER B -10 UNP P20536 EXPRESSION TAG SEQADV 5JKR HIS B -9 UNP P20536 EXPRESSION TAG SEQADV 5JKR HIS B -8 UNP P20536 EXPRESSION TAG SEQADV 5JKR HIS B -7 UNP P20536 EXPRESSION TAG SEQADV 5JKR HIS B -6 UNP P20536 EXPRESSION TAG SEQADV 5JKR HIS B -5 UNP P20536 EXPRESSION TAG SEQADV 5JKR HIS B -4 UNP P20536 EXPRESSION TAG SEQADV 5JKR SER B -3 UNP P20536 EXPRESSION TAG SEQADV 5JKR GLN B -2 UNP P20536 EXPRESSION TAG SEQADV 5JKR ASP B -1 UNP P20536 EXPRESSION TAG SEQADV 5JKR PRO B 0 UNP P20536 EXPRESSION TAG SEQADV 5JKR GLY D -1 UNP P20995 EXPRESSION TAG SEQADV 5JKR ALA D 0 UNP P20995 EXPRESSION TAG SEQADV 5JKR ALA D 43 UNP P20995 TRP 43 ENGINEERED MUTATION SEQADV 5JKR MET A -13 UNP P20536 INITIATING METHIONINE SEQADV 5JKR GLY A -12 UNP P20536 EXPRESSION TAG SEQADV 5JKR SER A -11 UNP P20536 EXPRESSION TAG SEQADV 5JKR SER A -10 UNP P20536 EXPRESSION TAG SEQADV 5JKR HIS A -9 UNP P20536 EXPRESSION TAG SEQADV 5JKR HIS A -8 UNP P20536 EXPRESSION TAG SEQADV 5JKR HIS A -7 UNP P20536 EXPRESSION TAG SEQADV 5JKR HIS A -6 UNP P20536 EXPRESSION TAG SEQADV 5JKR HIS A -5 UNP P20536 EXPRESSION TAG SEQADV 5JKR HIS A -4 UNP P20536 EXPRESSION TAG SEQADV 5JKR SER A -3 UNP P20536 EXPRESSION TAG SEQADV 5JKR GLN A -2 UNP P20536 EXPRESSION TAG SEQADV 5JKR ASP A -1 UNP P20536 EXPRESSION TAG SEQADV 5JKR PRO A 0 UNP P20536 EXPRESSION TAG SEQADV 5JKR GLY C -1 UNP P20995 EXPRESSION TAG SEQADV 5JKR ALA C 0 UNP P20995 EXPRESSION TAG SEQADV 5JKR ALA C 43 UNP P20995 TRP 43 ENGINEERED MUTATION SEQRES 1 B 232 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 232 PRO MET ASN SER VAL THR VAL SER HIS ALA PRO TYR THR SEQRES 3 B 232 ILE THR TYR HIS ASP ASP TRP GLU PRO VAL MET SER GLN SEQRES 4 B 232 LEU VAL GLU PHE TYR ASN GLU VAL ALA SER TRP LEU LEU SEQRES 5 B 232 ARG ASP GLU THR SER PRO ILE PRO ASP LYS PHE PHE ILE SEQRES 6 B 232 GLN LEU LYS GLN PRO LEU ARG ASN LYS ARG VAL CYS VAL SEQRES 7 B 232 CYS GLY ILE ASP PRO TYR PRO LYS ASP GLY THR GLY VAL SEQRES 8 B 232 PRO PHE GLU SER PRO ASN PHE THR LYS LYS SER ILE LYS SEQRES 9 B 232 GLU ILE ALA SER SER ILE SER ARG LEU THR GLY VAL ILE SEQRES 10 B 232 ASP TYR LYS GLY TYR ASN LEU ASN ILE ILE ASP GLY VAL SEQRES 11 B 232 ILE PRO TRP ASN TYR TYR LEU SER CYS LYS LEU GLY GLU SEQRES 12 B 232 THR LYS SER HIS ALA ILE TYR TRP ASP LYS ILE SER LYS SEQRES 13 B 232 LEU LEU LEU GLN HIS ILE THR LYS HIS VAL SER VAL LEU SEQRES 14 B 232 TYR CYS LEU GLY LYS THR ASP PHE SER ASN ILE ARG ALA SEQRES 15 B 232 LYS LEU GLU SER PRO VAL THR THR ILE VAL GLY TYR HIS SEQRES 16 B 232 PRO ALA ALA ARG ASP ARG GLN PHE GLU LYS ASP ARG SER SEQRES 17 B 232 PHE GLU ILE ILE ASN VAL LEU LEU GLU LEU ASP ASN LYS SEQRES 18 B 232 VAL PRO ILE ASN TRP ALA GLN GLY PHE ILE TYR SEQRES 1 D 52 GLY ALA MET THR SER SER ALA ASP LEU THR ASN LEU LYS SEQRES 2 D 52 GLU LEU LEU SER LEU TYR LYS SER LEU ARG PHE SER ASP SEQRES 3 D 52 SER ALA ALA ILE GLU LYS TYR ASN SER LEU VAL GLU TRP SEQRES 4 D 52 GLY THR SER THR TYR ALA LYS ILE GLY VAL GLN LYS VAL SEQRES 1 A 232 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 232 PRO MET ASN SER VAL THR VAL SER HIS ALA PRO TYR THR SEQRES 3 A 232 ILE THR TYR HIS ASP ASP TRP GLU PRO VAL MET SER GLN SEQRES 4 A 232 LEU VAL GLU PHE TYR ASN GLU VAL ALA SER TRP LEU LEU SEQRES 5 A 232 ARG ASP GLU THR SER PRO ILE PRO ASP LYS PHE PHE ILE SEQRES 6 A 232 GLN LEU LYS GLN PRO LEU ARG ASN LYS ARG VAL CYS VAL SEQRES 7 A 232 CYS GLY ILE ASP PRO TYR PRO LYS ASP GLY THR GLY VAL SEQRES 8 A 232 PRO PHE GLU SER PRO ASN PHE THR LYS LYS SER ILE LYS SEQRES 9 A 232 GLU ILE ALA SER SER ILE SER ARG LEU THR GLY VAL ILE SEQRES 10 A 232 ASP TYR LYS GLY TYR ASN LEU ASN ILE ILE ASP GLY VAL SEQRES 11 A 232 ILE PRO TRP ASN TYR TYR LEU SER CYS LYS LEU GLY GLU SEQRES 12 A 232 THR LYS SER HIS ALA ILE TYR TRP ASP LYS ILE SER LYS SEQRES 13 A 232 LEU LEU LEU GLN HIS ILE THR LYS HIS VAL SER VAL LEU SEQRES 14 A 232 TYR CYS LEU GLY LYS THR ASP PHE SER ASN ILE ARG ALA SEQRES 15 A 232 LYS LEU GLU SER PRO VAL THR THR ILE VAL GLY TYR HIS SEQRES 16 A 232 PRO ALA ALA ARG ASP ARG GLN PHE GLU LYS ASP ARG SER SEQRES 17 A 232 PHE GLU ILE ILE ASN VAL LEU LEU GLU LEU ASP ASN LYS SEQRES 18 A 232 VAL PRO ILE ASN TRP ALA GLN GLY PHE ILE TYR SEQRES 1 C 52 GLY ALA MET THR SER SER ALA ASP LEU THR ASN LEU LYS SEQRES 2 C 52 GLU LEU LEU SER LEU TYR LYS SER LEU ARG PHE SER ASP SEQRES 3 C 52 SER ALA ALA ILE GLU LYS TYR ASN SER LEU VAL GLU TRP SEQRES 4 C 52 GLY THR SER THR TYR ALA LYS ILE GLY VAL GLN LYS VAL HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 A 301 5 HET SO4 A 302 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 6(O4 S 2-) FORMUL 11 HOH *63(H2 O) HELIX 1 AA1 ASP B 18 PRO B 21 5 4 HELIX 2 AA2 VAL B 22 ARG B 39 1 18 HELIX 3 AA3 ILE B 45 PHE B 49 5 5 HELIX 4 AA4 PHE B 50 GLN B 55 5 6 HELIX 5 AA5 LYS B 86 GLY B 101 1 16 HELIX 6 AA6 LEU B 110 ILE B 113 5 4 HELIX 7 AA7 HIS B 133 VAL B 152 1 20 HELIX 8 AA8 ASN B 165 LEU B 170 5 6 HELIX 9 AA9 ALA B 184 GLN B 188 5 5 HELIX 10 AB1 ARG B 193 LEU B 204 1 12 HELIX 11 AB2 ASN B 211 GLN B 214 5 4 HELIX 12 AB3 SER D 3 LEU D 20 1 18 HELIX 13 AB4 ASP D 24 ALA D 43 1 20 HELIX 14 AB5 TRP A 19 ASP A 40 1 22 HELIX 15 AB6 ILE A 45 PHE A 49 5 5 HELIX 16 AB7 PHE A 50 GLN A 55 5 6 HELIX 17 AB8 LYS A 86 GLY A 101 1 16 HELIX 18 AB9 LEU A 110 ILE A 113 5 4 HELIX 19 AC1 HIS A 133 THR A 149 1 17 HELIX 20 AC2 ASN A 165 LEU A 170 5 6 HELIX 21 AC3 ARG A 193 LEU A 204 1 12 HELIX 22 AC4 ASN A 211 GLN A 214 5 4 HELIX 23 AC5 SER C 3 SER C 19 1 17 HELIX 24 AC6 ASP C 24 ALA C 43 1 20 SHEET 1 AA1 2 MET B 1 THR B 5 0 SHEET 2 AA1 2 THR B 12 HIS B 16 -1 O ILE B 13 N VAL B 4 SHEET 1 AA2 2 THR B 42 SER B 43 0 SHEET 2 AA2 2 CYS B 125 LYS B 126 -1 O CYS B 125 N SER B 43 SHEET 1 AA3 4 VAL B 116 ASN B 120 0 SHEET 2 AA3 4 VAL B 62 GLY B 66 1 N GLY B 66 O TRP B 119 SHEET 3 AA3 4 VAL B 154 LEU B 158 1 O TYR B 156 N CYS B 63 SHEET 4 AA3 4 THR B 175 GLY B 179 1 O THR B 175 N LEU B 155 SHEET 1 AA4 2 GLY B 107 TYR B 108 0 SHEET 2 AA4 2 PHE B 216 ILE B 217 -1 O ILE B 217 N GLY B 107 SHEET 1 AA5 2 MET A 1 THR A 5 0 SHEET 2 AA5 2 THR A 12 HIS A 16 -1 O ILE A 13 N VAL A 4 SHEET 1 AA6 2 THR A 42 SER A 43 0 SHEET 2 AA6 2 CYS A 125 LYS A 126 -1 O CYS A 125 N SER A 43 SHEET 1 AA7 4 VAL A 116 ASN A 120 0 SHEET 2 AA7 4 VAL A 62 GLY A 66 1 N VAL A 64 O TRP A 119 SHEET 3 AA7 4 VAL A 154 LEU A 158 1 O TYR A 156 N CYS A 63 SHEET 4 AA7 4 THR A 175 GLY A 179 1 O ILE A 177 N LEU A 155 SHEET 1 AA8 2 GLY A 107 TYR A 108 0 SHEET 2 AA8 2 PHE A 216 ILE A 217 -1 O ILE A 217 N GLY A 107 CISPEP 1 ALA B 9 PRO B 10 0 12.68 CISPEP 2 SER B 43 PRO B 44 0 -4.81 CISPEP 3 ALA A 9 PRO A 10 0 2.83 CISPEP 4 SER A 43 PRO A 44 0 -9.76 CISPEP 5 ALA A 184 ARG A 185 0 3.20 SITE 1 AC1 7 GLY B 159 LYS B 160 THR B 161 TYR B 180 SITE 2 AC1 7 HIS B 181 ALA B 184 HOH B 402 SITE 1 AC2 5 TYR B 70 PRO B 71 SER B 88 HIS B 181 SITE 2 AC2 5 SO4 B 303 SITE 1 AC3 7 GLY B 66 ASP B 68 PRO B 69 TYR B 70 SITE 2 AC3 7 PHE B 79 ASN B 120 SO4 B 302 SITE 1 AC4 4 LYS B 86 LYS B 87 HOH B 406 HOH B 415 SITE 1 AC5 4 LYS A 160 THR A 161 TYR A 180 HIS A 181 SITE 1 AC6 2 LYS A 86 LYS A 87 CRYST1 92.980 92.980 145.710 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010755 0.006209 0.000000 0.00000 SCALE2 0.000000 0.012419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006863 0.00000