HEADER HYDROLASE 27-APR-16 5JLP TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM AVIUM SERB2 IN COMPLEX WITH SERINE TITLE 2 AT ACT DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOSERINE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 5-400; COMPND 5 SYNONYM: PSPASE,O-PHOSPHOSERINE PHOSPHOHYDROLASE; COMPND 6 EC: 3.1.3.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM (STRAIN 104); SOURCE 3 ORGANISM_TAXID: 243243; SOURCE 4 STRAIN: 104; SOURCE 5 GENE: SERB, MAV_3907; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HAD FAMILY, PHOSPHOSERINE PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SHREE,R.RAMACHANDRAN REVDAT 2 08-NOV-23 5JLP 1 REMARK REVDAT 1 03-MAY-17 5JLP 0 JRNL AUTH S.SHREE,R.RAMACHANDRAN JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM AVIUM SERB2 IN COMPLEX JRNL TITL 2 WITH SERINE AT ACT DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.ABENDROTH,A.S.GARDBERG,J.I.ROBINSON,J.S.CHRISTENSEN, REMARK 1 AUTH 2 B.L.STAKER,P.J.MYLER,L.J.STEWART,T.E.EDWARDS REMARK 1 TITL SAD PHASING USING IODIDE IONS IN A HIGH-THROUGHPUT REMARK 1 TITL 2 STRUCTURAL GENOMICS ENVIRONMENT. REMARK 1 REF J. STRUCT. FUNCT. GENOMICS V. 12 83 2011 REMARK 1 REFN ISSN 1570-0267 REMARK 1 PMID 21359836 REMARK 1 DOI 10.1007/S10969-011-9101-7 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 29846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2387 - 6.8676 0.92 1290 141 0.1548 0.2177 REMARK 3 2 6.8676 - 5.4575 0.94 1278 134 0.1891 0.2961 REMARK 3 3 5.4575 - 4.7696 0.94 1315 147 0.1609 0.2029 REMARK 3 4 4.7696 - 4.3343 0.95 1291 142 0.1506 0.2173 REMARK 3 5 4.3343 - 4.0241 0.95 1305 132 0.1560 0.2115 REMARK 3 6 4.0241 - 3.7872 0.95 1313 151 0.1646 0.1988 REMARK 3 7 3.7872 - 3.5977 0.96 1320 147 0.1807 0.2532 REMARK 3 8 3.5977 - 3.4412 0.96 1314 150 0.1740 0.3088 REMARK 3 9 3.4412 - 3.3089 0.96 1321 141 0.1952 0.2247 REMARK 3 10 3.3089 - 3.1948 0.96 1308 149 0.2049 0.2666 REMARK 3 11 3.1948 - 3.0949 0.97 1327 149 0.2226 0.2693 REMARK 3 12 3.0949 - 3.0065 0.97 1356 148 0.2449 0.4792 REMARK 3 13 3.0065 - 2.9274 0.97 1325 151 0.2520 0.3423 REMARK 3 14 2.9274 - 2.8560 0.97 1334 154 0.2688 0.3754 REMARK 3 15 2.8560 - 2.7911 0.97 1320 147 0.2701 0.3864 REMARK 3 16 2.7911 - 2.7317 0.96 1294 148 0.2800 0.3661 REMARK 3 17 2.7317 - 2.6771 0.93 1323 142 0.2868 0.4207 REMARK 3 18 2.6771 - 2.6266 0.92 1252 140 0.2986 0.3883 REMARK 3 19 2.6266 - 2.5797 0.89 1193 138 0.2776 0.3994 REMARK 3 20 2.5797 - 2.5360 0.83 1165 130 0.2991 0.3349 REMARK 3 21 2.5360 - 2.4951 0.69 919 102 0.3059 0.4751 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2861 REMARK 3 ANGLE : 1.166 3906 REMARK 3 CHIRALITY : 0.047 502 REMARK 3 PLANARITY : 0.005 508 REMARK 3 DIHEDRAL : 13.360 980 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -4.9071 -10.7477 -39.1907 REMARK 3 T TENSOR REMARK 3 T11: 0.4323 T22: 0.4217 REMARK 3 T33: 0.4792 T12: -0.1587 REMARK 3 T13: 0.0606 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.6766 L22: 0.9121 REMARK 3 L33: 4.4751 L12: 0.2878 REMARK 3 L13: 0.6071 L23: 0.6507 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: 0.0685 S13: -0.0402 REMARK 3 S21: 0.0386 S22: -0.1012 S23: 0.0677 REMARK 3 S31: 0.6914 S32: -0.2453 S33: 0.0787 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 I_PLUS/MINUS COLUMNS. REMARK 4 REMARK 4 5JLP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29846 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.495 REMARK 200 RESOLUTION RANGE LOW (A) : 35.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3P96 REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 8000, 0.1 M MAGNESIUM ACETATE REMARK 280 TETRAHYDRATE, 0.1M HEPES PH 6.6, 0.1 M L- SERINE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.27400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.76750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.21700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.27400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.76750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.21700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.27400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.76750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.21700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.27400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.76750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.21700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 ASP A 59 CG OD1 OD2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 87 CG OD1 OD2 REMARK 470 ASP A 88 CG OD1 OD2 REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 135 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 208 CG CD OE1 OE2 REMARK 470 ASP A 216 CG OD1 OD2 REMARK 470 MET A 219 CG SD CE REMARK 470 ARG A 220 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 GLN A 227 CG CD OE1 NE2 REMARK 470 GLN A 231 CG CD OE1 NE2 REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 GLN A 250 CG CD OE1 NE2 REMARK 470 ARG A 279 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 284 CG CD REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 ARG A 367 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 470 ASP A 400 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 300 OG1 THR A 307 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 6 -112.09 -59.73 REMARK 500 ASN A 38 145.25 -170.10 REMARK 500 SER A 86 -77.53 -120.37 REMARK 500 ARG A 105 77.04 -152.08 REMARK 500 HIS A 166 41.57 71.00 REMARK 500 TYR A 174 64.48 -107.44 REMARK 500 ARG A 178 13.14 -65.13 REMARK 500 ARG A 182 -2.20 -142.54 REMARK 500 VAL A 188 -60.38 -91.41 REMARK 500 THR A 191 -82.80 -122.19 REMARK 500 ALA A 241 2.40 -62.74 REMARK 500 ILE A 315 98.63 -68.97 REMARK 500 ASP A 316 -169.88 -102.80 REMARK 500 LYS A 363 150.30 -49.11 REMARK 500 ARG A 367 3.31 -60.71 REMARK 500 VAL A 369 -8.90 -150.18 REMARK 500 SER A 375 22.20 -147.43 REMARK 500 PRO A 377 43.41 -78.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 187 OD2 REMARK 620 2 ASP A 343 OD1 76.9 REMARK 620 3 ASP A 347 OD2 89.3 88.1 REMARK 620 4 HOH A 611 O 77.1 117.4 146.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG0 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SER A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JLR RELATED DB: PDB REMARK 900 RELATED ID: 5JMA RELATED DB: PDB DBREF 5JLP A 5 400 UNP A0QJI1 SERB_MYCA1 5 400 SEQADV 5JLP ARG A 31 UNP A0QJI1 GLY 31 ENGINEERED MUTATION SEQRES 1 A 396 PRO LYS VAL SER VAL LEU ILE THR VAL THR GLY VAL ASP SEQRES 2 A 396 GLN PRO GLY VAL THR ALA THR LEU PHE GLU VAL LEU SER SEQRES 3 A 396 ARG HIS GLY VAL GLU LEU LEU ASN VAL GLU GLN VAL VAL SEQRES 4 A 396 ILE ARG HIS ARG LEU THR LEU GLY VAL LEU VAL CYS CYS SEQRES 5 A 396 PRO ALA ASP VAL ALA ASP GLY PRO ALA LEU ARG HIS ASP SEQRES 6 A 396 VAL GLU ALA ALA ILE ARG LYS VAL GLY LEU ASP VAL SER SEQRES 7 A 396 ILE GLU ARG SER ASP ASP VAL PRO ILE ILE ARG GLU PRO SEQRES 8 A 396 SER THR HIS THR ILE PHE VAL LEU GLY ARG PRO ILE THR SEQRES 9 A 396 ALA ALA ALA PHE GLY ALA VAL ALA ARG GLU VAL ALA ALA SEQRES 10 A 396 LEU GLY VAL ASN ILE ASP LEU ILE ARG GLY VAL SER ASP SEQRES 11 A 396 TYR PRO VAL ILE GLY LEU GLU LEU ARG VAL SER VAL PRO SEQRES 12 A 396 PRO GLY ALA ASP GLY ALA LEU ARG THR ALA LEU ASN ARG SEQRES 13 A 396 VAL SER SER GLU GLU HIS VAL ASP VAL ALA VAL GLU ASP SEQRES 14 A 396 TYR THR LEU GLU ARG ARG ALA LYS ARG LEU ILE VAL PHE SEQRES 15 A 396 ASP VAL ASP SER THR LEU VAL GLN GLY GLU VAL ILE GLU SEQRES 16 A 396 MET LEU ALA ALA LYS ALA GLY ALA GLU GLY GLN VAL ALA SEQRES 17 A 396 ALA ILE THR ASP ALA ALA MET ARG GLY GLU LEU ASP PHE SEQRES 18 A 396 ALA GLN SER LEU GLN GLN ARG VAL ALA THR LEU ALA GLY SEQRES 19 A 396 LEU PRO ALA THR VAL ILE ASP GLU VAL ALA GLY GLN LEU SEQRES 20 A 396 GLU LEU MET PRO GLY ALA ARG THR THR LEU ARG THR LEU SEQRES 21 A 396 ARG ARG LEU GLY TYR ALA CYS GLY VAL VAL SER GLY GLY SEQRES 22 A 396 PHE ARG ARG ILE ILE GLU PRO LEU ALA GLU GLU LEU MET SEQRES 23 A 396 LEU ASP TYR VAL ALA ALA ASN GLU LEU GLU ILE VAL ASP SEQRES 24 A 396 GLY THR LEU THR GLY ARG VAL VAL GLY PRO ILE ILE ASP SEQRES 25 A 396 ARG ALA GLY LYS ALA THR ALA LEU ARG GLU PHE ALA GLN SEQRES 26 A 396 ARG ALA GLY VAL PRO MET ALA GLN THR VAL ALA VAL GLY SEQRES 27 A 396 ASP GLY ALA ASN ASP ILE ASP MET LEU ALA ALA ALA GLY SEQRES 28 A 396 LEU GLY ILE ALA PHE ASN ALA LYS PRO ALA LEU ARG GLU SEQRES 29 A 396 VAL ALA ASP ALA SER LEU SER HIS PRO TYR LEU ASP THR SEQRES 30 A 396 VAL LEU PHE LEU LEU GLY VAL THR ARG GLY GLU ILE GLU SEQRES 31 A 396 ALA ALA ASP ALA ILE ASP HET EDO A 501 4 HET PG0 A 502 8 HET MG A 503 1 HET SER A 504 7 HETNAM EDO 1,2-ETHANEDIOL HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETNAM MG MAGNESIUM ION HETNAM SER SERINE HETSYN EDO ETHYLENE GLYCOL HETSYN PG0 PEG 6000 FORMUL 2 EDO C2 H6 O2 FORMUL 3 PG0 C5 H12 O3 FORMUL 4 MG MG 2+ FORMUL 5 SER C3 H7 N O3 FORMUL 6 HOH *18(H2 O) HELIX 1 AA1 GLY A 20 HIS A 32 1 13 HELIX 2 AA2 PRO A 57 ASP A 62 1 6 HELIX 3 AA3 GLY A 63 LYS A 76 1 14 HELIX 4 AA4 THR A 108 LEU A 122 1 15 HELIX 5 AA5 GLY A 149 HIS A 166 1 18 HELIX 6 AA6 LEU A 176 ALA A 180 5 5 HELIX 7 AA7 GLU A 196 GLY A 206 1 11 HELIX 8 AA8 ALA A 207 MET A 219 1 13 HELIX 9 AA9 ASP A 224 THR A 235 1 12 HELIX 10 AB1 THR A 242 GLY A 249 1 8 HELIX 11 AB2 GLY A 256 LEU A 267 1 12 HELIX 12 AB3 ARG A 279 LEU A 289 1 11 HELIX 13 AB4 ASP A 316 GLY A 332 1 17 HELIX 14 AB5 PRO A 334 ALA A 336 5 3 HELIX 15 AB6 GLY A 344 ASN A 346 5 3 HELIX 16 AB7 ASP A 347 ALA A 354 1 8 HELIX 17 AB8 ASP A 380 LEU A 385 1 6 HELIX 18 AB9 THR A 389 ILE A 399 1 11 SHEET 1 AA1 4 GLU A 35 ILE A 44 0 SHEET 2 AA1 4 ARG A 47 CYS A 55 -1 O GLY A 51 N GLU A 40 SHEET 3 AA1 4 SER A 8 VAL A 16 -1 N ILE A 11 O VAL A 52 SHEET 4 AA1 4 ASP A 80 ARG A 85 -1 O ASP A 80 N THR A 14 SHEET 1 AA2 4 ASN A 125 SER A 133 0 SHEET 2 AA2 4 ILE A 138 SER A 145 -1 O GLU A 141 N ARG A 130 SHEET 3 AA2 4 HIS A 98 GLY A 104 -1 N ILE A 100 O LEU A 142 SHEET 4 AA2 4 ASP A 168 ASP A 173 -1 O ASP A 168 N LEU A 103 SHEET 1 AA3 6 TYR A 293 ASN A 297 0 SHEET 2 AA3 6 ALA A 270 PHE A 278 1 N SER A 275 O ALA A 295 SHEET 3 AA3 6 LEU A 183 PHE A 186 1 N ILE A 184 O ALA A 270 SHEET 4 AA3 6 THR A 338 GLY A 342 1 O VAL A 339 N LEU A 183 SHEET 5 AA3 6 LEU A 356 PHE A 360 1 O ILE A 358 N ALA A 340 SHEET 6 AA3 6 ALA A 372 LEU A 374 1 O ALA A 372 N ALA A 359 SHEET 1 AA4 2 LEU A 299 ILE A 301 0 SHEET 2 AA4 2 LEU A 306 VAL A 310 -1 O THR A 307 N GLU A 300 LINK OD2 ASP A 187 MG MG A 503 1555 1555 2.30 LINK OD1 ASP A 343 MG MG A 503 1555 1555 2.15 LINK OD2 ASP A 347 MG MG A 503 1555 1555 2.97 LINK MG MG A 503 O HOH A 611 1555 1555 2.33 CISPEP 1 ARG A 105 PRO A 106 0 7.06 CISPEP 2 TYR A 135 PRO A 136 0 4.07 CISPEP 3 GLY A 312 PRO A 313 0 1.32 SITE 1 AC1 3 TYR A 293 VAL A 294 GLU A 326 SITE 1 AC2 5 ASP A 187 ASP A 189 ASP A 343 ASP A 347 SITE 2 AC2 5 HOH A 611 SITE 1 AC3 7 ASP A 17 GLN A 18 THR A 22 GLN A 41 SITE 2 AC3 7 VAL A 43 ASN A 125 ILE A 126 CRYST1 64.548 109.535 134.434 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015492 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007439 0.00000