HEADER VIRAL PROTEIN/DNA 27-APR-16 5JLT TITLE THE CRYSTAL STRUCTURE OF THE BACTERIOPHAGE T4 MOTA C-TERMINAL DOMAIN TITLE 2 IN COMPLEX WITH DSDNA REVEALS A NOVEL PROTEIN-DNA RECOGNITION MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: MIDDLE TRANSCRIPTION REGULATORY PROTEIN MOTA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: NON-NATIVE AMINO ACIDS FROM EXPRESSION VECTOR= EGDIHM. COMPND 6 N-TERM RESIDUES (93-96) = ELLK. LINKER (97-104) = KRATRKAR. COMPND 7 HTTP://WWW.UNIPROT.ORG/UNIPROT/P22915; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*GP*AP*AP*GP*CP*TP*TP*TP*GP*CP*TP*TP*AP*AP*TP*AP*AP*TP*CP*CP*AP*C)- COMPND 11 3'); COMPND 12 CHAIN: E, H; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'- COMPND 16 D(*GP*TP*GP*GP*AP*TP*TP*AP*TP*TP*AP*AP*GP*CP*AP*AP*AP*GP*CP*TP*TP*C)- COMPND 17 3'); COMPND 18 CHAIN: F, G; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665; SOURCE 4 GENE: MOTA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS MOTA, DSDNA, "DOUBLE WING", DNA BINDING MOTIF, VIRAL PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,R.M.ROBERTSON,L.KNIPLING,D.M.HINTON,S.W.WHITE REVDAT 3 27-SEP-23 5JLT 1 REMARK REVDAT 2 27-NOV-19 5JLT 1 JRNL REVDAT 1 03-MAY-17 5JLT 0 JRNL AUTH M.G.CUYPERS,R.M.ROBERTSON,L.KNIPLING,M.B.WADDELL,K.MOON, JRNL AUTH 2 D.M.HINTON,S.W.WHITE JRNL TITL THE PHAGE T4 MOTA TRANSCRIPTION FACTOR CONTAINS A NOVEL DNA JRNL TITL 2 BINDING MOTIF THAT SPECIFICALLY RECOGNIZES MODIFIED DNA. JRNL REF NUCLEIC ACIDS RES. V. 46 5308 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29718457 JRNL DOI 10.1093/NAR/GKY292 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2363) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.7878 - 5.3584 0.95 2751 141 0.1901 0.1955 REMARK 3 2 5.3584 - 4.2586 0.95 2701 140 0.2023 0.2637 REMARK 3 3 4.2586 - 3.7219 0.95 2736 152 0.2310 0.2461 REMARK 3 4 3.7219 - 3.3823 0.96 2727 127 0.2388 0.2655 REMARK 3 5 3.3823 - 3.1403 0.95 2674 152 0.2186 0.2512 REMARK 3 6 3.1403 - 2.9554 0.95 2776 144 0.3366 0.3478 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5603 REMARK 3 ANGLE : 1.544 7893 REMARK 3 CHIRALITY : 0.081 884 REMARK 3 PLANARITY : 0.006 705 REMARK 3 DIHEDRAL : 24.481 3107 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE SETTINGS OF PHENIX.REFINE WERE REMARK 3 TUNED TO USE REFERENCE MODEL RESTRAINTS (PDB: 1KAF), NCS AND THE REMARK 3 TWIN LAW K,H,-L. REMARK 4 REMARK 4 5JLT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17332 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.955 REMARK 200 RESOLUTION RANGE LOW (A) : 93.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.40 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 23.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1KAF + DNA HELIX FROM COOT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 8K, 0.1 M NA ACETATE, 0.1 M REMARK 280 NACACODYLATE, PH 6.5, AND 3% GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.12300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 186.24600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 139.68450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 232.80750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.56150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 87 REMARK 465 GLY A 88 REMARK 465 ASP A 89 REMARK 465 ILE A 90 REMARK 465 HIS A 91 REMARK 465 MET A 92 REMARK 465 GLU A 93 REMARK 465 LEU A 94 REMARK 465 LEU A 95 REMARK 465 LYS A 96 REMARK 465 LYS A 97 REMARK 465 GLU B 87 REMARK 465 GLY B 88 REMARK 465 ASP B 89 REMARK 465 ILE B 90 REMARK 465 HIS B 91 REMARK 465 MET B 92 REMARK 465 GLU B 93 REMARK 465 LEU B 94 REMARK 465 LEU B 95 REMARK 465 LYS B 96 REMARK 465 LYS B 97 REMARK 465 ARG B 98 REMARK 465 ALA B 99 REMARK 465 THR B 100 REMARK 465 ARG B 101 REMARK 465 LYS B 102 REMARK 465 ALA B 103 REMARK 465 GLU C 87 REMARK 465 GLY C 88 REMARK 465 ASP C 89 REMARK 465 ILE C 90 REMARK 465 HIS C 91 REMARK 465 MET C 92 REMARK 465 GLU C 93 REMARK 465 LEU C 94 REMARK 465 LEU C 95 REMARK 465 LYS C 96 REMARK 465 LYS C 97 REMARK 465 ARG C 98 REMARK 465 ALA C 99 REMARK 465 THR C 100 REMARK 465 ARG C 101 REMARK 465 GLU D 87 REMARK 465 GLY D 88 REMARK 465 ASP D 89 REMARK 465 ILE D 90 REMARK 465 HIS D 91 REMARK 465 MET D 92 REMARK 465 GLU D 93 REMARK 465 LEU D 94 REMARK 465 LEU D 95 REMARK 465 LYS D 96 REMARK 465 LYS D 97 REMARK 465 ARG D 98 REMARK 465 ALA D 99 REMARK 465 THR D 100 REMARK 465 ARG D 101 REMARK 465 LYS D 102 REMARK 465 ALA D 103 REMARK 465 ARG D 104 REMARK 465 GLU D 105 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 113 CD ARG B 196 2.05 REMARK 500 OG1 THR C 107 OD1 ASP C 109 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 116 CA - CB - CG ANGL. DEV. = 18.3 DEGREES REMARK 500 VAL B 190 CG1 - CB - CG2 ANGL. DEV. = -10.4 DEGREES REMARK 500 LEU C 116 CA - CB - CG ANGL. DEV. = 23.3 DEGREES REMARK 500 LEU C 121 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 ASN C 159 CB - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 LYS C 174 CD - CE - NZ ANGL. DEV. = 16.9 DEGREES REMARK 500 LEU C 192 CB - CG - CD2 ANGL. DEV. = -20.5 DEGREES REMARK 500 ASP C 193 CB - CA - C ANGL. DEV. = -14.8 DEGREES REMARK 500 LEU D 120 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 LYS D 130 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG D 150 CG - CD - NE ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 105 -170.25 -173.35 REMARK 500 THR B 107 -34.73 -38.91 REMARK 500 SER B 108 -129.94 -171.71 REMARK 500 ASP B 109 -42.59 47.54 REMARK 500 ARG B 196 -114.47 -74.71 REMARK 500 SER B 197 -119.70 65.01 REMARK 500 GLU B 199 -44.77 58.88 REMARK 500 ALA C 103 -95.82 48.59 REMARK 500 ARG C 104 150.47 174.18 REMARK 500 LYS C 130 172.29 178.83 REMARK 500 ASP D 109 13.68 -63.05 REMARK 500 ARG D 135 -65.00 54.63 REMARK 500 SER D 136 35.67 175.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR D 107 SER D 108 -34.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 351 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 352 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 353 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 354 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 355 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 356 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A 357 DISTANCE = 7.72 ANGSTROMS REMARK 525 HOH A 358 DISTANCE = 7.92 ANGSTROMS REMARK 525 HOH B 341 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 342 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 343 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 344 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B 345 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH B 346 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH C 350 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH C 351 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH C 352 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH C 353 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH C 354 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH C 355 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH C 356 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH C 357 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH C 358 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH C 359 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH C 360 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH C 361 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH C 362 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH C 363 DISTANCE = 7.98 ANGSTROMS REMARK 525 HOH C 364 DISTANCE = 8.23 ANGSTROMS REMARK 525 HOH C 365 DISTANCE = 8.25 ANGSTROMS REMARK 525 HOH C 366 DISTANCE = 8.70 ANGSTROMS REMARK 525 HOH C 367 DISTANCE = 9.64 ANGSTROMS REMARK 525 HOH D 358 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH D 359 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH D 360 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH D 361 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH D 362 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH D 363 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH D 364 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH D 365 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH D 366 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH D 367 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH D 368 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH D 369 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH D 370 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH D 371 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH D 372 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH D 373 DISTANCE = 7.72 ANGSTROMS REMARK 525 HOH D 374 DISTANCE = 8.48 ANGSTROMS REMARK 525 HOH D 375 DISTANCE = 8.57 ANGSTROMS REMARK 525 HOH E 128 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH E 129 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH F 134 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH F 135 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH F 136 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH F 137 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH G 130 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH G 131 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH G 132 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH G 133 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH G 134 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH G 135 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH H 132 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH H 133 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH H 134 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH H 135 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH H 136 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH H 137 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH H 138 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH H 139 DISTANCE = 8.26 ANGSTROMS REMARK 525 HOH H 140 DISTANCE = 9.08 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KAF RELATED DB: PDB REMARK 900 MOTA PROTEIN ONLY DBREF 5JLT A 93 211 UNP P22915 MOTA_BPT4 93 211 DBREF 5JLT B 93 211 UNP P22915 MOTA_BPT4 93 211 DBREF 5JLT C 93 211 UNP P22915 MOTA_BPT4 93 211 DBREF 5JLT D 93 211 UNP P22915 MOTA_BPT4 93 211 DBREF 5JLT E 1 22 PDB 5JLT 5JLT 1 22 DBREF 5JLT F 1 22 PDB 5JLT 5JLT 1 22 DBREF 5JLT G 1 22 PDB 5JLT 5JLT 1 22 DBREF 5JLT H 1 22 PDB 5JLT 5JLT 1 22 SEQADV 5JLT GLU A 87 UNP P22915 EXPRESSION TAG SEQADV 5JLT GLY A 88 UNP P22915 EXPRESSION TAG SEQADV 5JLT ASP A 89 UNP P22915 EXPRESSION TAG SEQADV 5JLT ILE A 90 UNP P22915 EXPRESSION TAG SEQADV 5JLT HIS A 91 UNP P22915 EXPRESSION TAG SEQADV 5JLT MET A 92 UNP P22915 EXPRESSION TAG SEQADV 5JLT GLU B 87 UNP P22915 EXPRESSION TAG SEQADV 5JLT GLY B 88 UNP P22915 EXPRESSION TAG SEQADV 5JLT ASP B 89 UNP P22915 EXPRESSION TAG SEQADV 5JLT ILE B 90 UNP P22915 EXPRESSION TAG SEQADV 5JLT HIS B 91 UNP P22915 EXPRESSION TAG SEQADV 5JLT MET B 92 UNP P22915 EXPRESSION TAG SEQADV 5JLT GLU C 87 UNP P22915 EXPRESSION TAG SEQADV 5JLT GLY C 88 UNP P22915 EXPRESSION TAG SEQADV 5JLT ASP C 89 UNP P22915 EXPRESSION TAG SEQADV 5JLT ILE C 90 UNP P22915 EXPRESSION TAG SEQADV 5JLT HIS C 91 UNP P22915 EXPRESSION TAG SEQADV 5JLT MET C 92 UNP P22915 EXPRESSION TAG SEQADV 5JLT GLU D 87 UNP P22915 EXPRESSION TAG SEQADV 5JLT GLY D 88 UNP P22915 EXPRESSION TAG SEQADV 5JLT ASP D 89 UNP P22915 EXPRESSION TAG SEQADV 5JLT ILE D 90 UNP P22915 EXPRESSION TAG SEQADV 5JLT HIS D 91 UNP P22915 EXPRESSION TAG SEQADV 5JLT MET D 92 UNP P22915 EXPRESSION TAG SEQRES 1 A 125 GLU GLY ASP ILE HIS MET GLU LEU LEU LYS LYS ARG ALA SEQRES 2 A 125 THR ARG LYS ALA ARG GLU ILE THR SER ASP MET GLU GLU SEQRES 3 A 125 ASP LYS ASP LEU MET LEU LYS LEU LEU ASP LYS ASN GLY SEQRES 4 A 125 PHE VAL LEU LYS LYS VAL GLU ILE TYR ARG SER ASN TYR SEQRES 5 A 125 LEU ALA ILE LEU GLU LYS ARG THR ASN GLY ILE ARG ASN SEQRES 6 A 125 PHE GLU ILE ASN ASN ASN GLY ASN MET ARG ILE PHE GLY SEQRES 7 A 125 TYR LYS MET MET GLU HIS HIS ILE GLN LYS PHE THR ASP SEQRES 8 A 125 ILE GLY MET SER CYS LYS ILE ALA LYS ASN GLY ASN VAL SEQRES 9 A 125 TYR LEU ASP ILE LYS ARG SER ALA GLU ASN ILE GLU ALA SEQRES 10 A 125 VAL ILE THR VAL ALA SER GLU LEU SEQRES 1 B 125 GLU GLY ASP ILE HIS MET GLU LEU LEU LYS LYS ARG ALA SEQRES 2 B 125 THR ARG LYS ALA ARG GLU ILE THR SER ASP MET GLU GLU SEQRES 3 B 125 ASP LYS ASP LEU MET LEU LYS LEU LEU ASP LYS ASN GLY SEQRES 4 B 125 PHE VAL LEU LYS LYS VAL GLU ILE TYR ARG SER ASN TYR SEQRES 5 B 125 LEU ALA ILE LEU GLU LYS ARG THR ASN GLY ILE ARG ASN SEQRES 6 B 125 PHE GLU ILE ASN ASN ASN GLY ASN MET ARG ILE PHE GLY SEQRES 7 B 125 TYR LYS MET MET GLU HIS HIS ILE GLN LYS PHE THR ASP SEQRES 8 B 125 ILE GLY MET SER CYS LYS ILE ALA LYS ASN GLY ASN VAL SEQRES 9 B 125 TYR LEU ASP ILE LYS ARG SER ALA GLU ASN ILE GLU ALA SEQRES 10 B 125 VAL ILE THR VAL ALA SER GLU LEU SEQRES 1 C 125 GLU GLY ASP ILE HIS MET GLU LEU LEU LYS LYS ARG ALA SEQRES 2 C 125 THR ARG LYS ALA ARG GLU ILE THR SER ASP MET GLU GLU SEQRES 3 C 125 ASP LYS ASP LEU MET LEU LYS LEU LEU ASP LYS ASN GLY SEQRES 4 C 125 PHE VAL LEU LYS LYS VAL GLU ILE TYR ARG SER ASN TYR SEQRES 5 C 125 LEU ALA ILE LEU GLU LYS ARG THR ASN GLY ILE ARG ASN SEQRES 6 C 125 PHE GLU ILE ASN ASN ASN GLY ASN MET ARG ILE PHE GLY SEQRES 7 C 125 TYR LYS MET MET GLU HIS HIS ILE GLN LYS PHE THR ASP SEQRES 8 C 125 ILE GLY MET SER CYS LYS ILE ALA LYS ASN GLY ASN VAL SEQRES 9 C 125 TYR LEU ASP ILE LYS ARG SER ALA GLU ASN ILE GLU ALA SEQRES 10 C 125 VAL ILE THR VAL ALA SER GLU LEU SEQRES 1 D 125 GLU GLY ASP ILE HIS MET GLU LEU LEU LYS LYS ARG ALA SEQRES 2 D 125 THR ARG LYS ALA ARG GLU ILE THR SER ASP MET GLU GLU SEQRES 3 D 125 ASP LYS ASP LEU MET LEU LYS LEU LEU ASP LYS ASN GLY SEQRES 4 D 125 PHE VAL LEU LYS LYS VAL GLU ILE TYR ARG SER ASN TYR SEQRES 5 D 125 LEU ALA ILE LEU GLU LYS ARG THR ASN GLY ILE ARG ASN SEQRES 6 D 125 PHE GLU ILE ASN ASN ASN GLY ASN MET ARG ILE PHE GLY SEQRES 7 D 125 TYR LYS MET MET GLU HIS HIS ILE GLN LYS PHE THR ASP SEQRES 8 D 125 ILE GLY MET SER CYS LYS ILE ALA LYS ASN GLY ASN VAL SEQRES 9 D 125 TYR LEU ASP ILE LYS ARG SER ALA GLU ASN ILE GLU ALA SEQRES 10 D 125 VAL ILE THR VAL ALA SER GLU LEU SEQRES 1 E 22 DG DA DA DG DC DT DT DT DG DC DT DT DA SEQRES 2 E 22 DA DT DA DA DT DC DC DA DC SEQRES 1 F 22 DG DT DG DG DA DT DT DA DT DT DA DA DG SEQRES 2 F 22 DC DA DA DA DG DC DT DT DC SEQRES 1 G 22 DG DT DG DG DA DT DT DA DT DT DA DA DG SEQRES 2 G 22 DC DA DA DA DG DC DT DT DC SEQRES 1 H 22 DG DA DA DG DC DT DT DT DG DC DT DT DA SEQRES 2 H 22 DA DT DA DA DT DC DC DA DC FORMUL 9 HOH *387(H2 O) HELIX 1 AA1 THR A 107 ASN A 124 1 18 HELIX 2 AA2 MET A 168 ASP A 177 1 10 HELIX 3 AA3 SER A 197 GLU A 210 1 14 HELIX 4 AA4 ASP B 109 ASN B 124 1 16 HELIX 5 AA5 MET B 168 ILE B 178 1 11 HELIX 6 AA6 GLU B 199 LEU B 211 1 13 HELIX 7 AA7 THR C 107 ASN C 124 1 18 HELIX 8 AA8 MET C 168 ASP C 177 1 10 HELIX 9 AA9 SER C 197 GLU C 210 1 14 HELIX 10 AB1 ASP D 109 ASN D 124 1 16 HELIX 11 AB2 MET D 168 ASP D 177 1 10 HELIX 12 AB3 SER D 197 LEU D 211 1 15 SHEET 1 AA1 6 LEU A 128 ILE A 133 0 SHEET 2 AA1 6 TYR A 138 THR A 146 -1 O ILE A 141 N LYS A 129 SHEET 3 AA1 6 ILE A 149 ILE A 154 -1 O PHE A 152 N ALA A 140 SHEET 4 AA1 6 ASN A 159 TYR A 165 -1 O PHE A 163 N ARG A 150 SHEET 5 AA1 6 ASN A 189 LYS A 195 -1 O ILE A 194 N MET A 160 SHEET 6 AA1 6 SER A 181 ILE A 184 -1 N SER A 181 O ASP A 193 SHEET 1 AA2 6 LEU B 128 TYR B 134 0 SHEET 2 AA2 6 ASN B 137 THR B 146 -1 O LEU B 139 N GLU B 132 SHEET 3 AA2 6 ILE B 149 ILE B 154 -1 O ILE B 154 N TYR B 138 SHEET 4 AA2 6 ASN B 159 TYR B 165 -1 O ARG B 161 N GLU B 153 SHEET 5 AA2 6 ASN B 189 LYS B 195 -1 O ILE B 194 N MET B 160 SHEET 6 AA2 6 SER B 181 ILE B 184 -1 N SER B 181 O ASP B 193 SHEET 1 AA3 6 LEU C 128 TYR C 134 0 SHEET 2 AA3 6 ASN C 137 THR C 146 -1 O ILE C 141 N LYS C 129 SHEET 3 AA3 6 ILE C 149 ILE C 154 -1 O PHE C 152 N ALA C 140 SHEET 4 AA3 6 ASN C 159 TYR C 165 -1 O PHE C 163 N ASN C 151 SHEET 5 AA3 6 ASN C 189 LYS C 195 -1 O ILE C 194 N MET C 160 SHEET 6 AA3 6 SER C 181 ILE C 184 -1 N SER C 181 O ASP C 193 SHEET 1 AA4 6 LEU D 128 TYR D 134 0 SHEET 2 AA4 6 ASN D 137 THR D 146 -1 O ILE D 141 N LYS D 130 SHEET 3 AA4 6 ILE D 149 ILE D 154 -1 O ILE D 154 N TYR D 138 SHEET 4 AA4 6 ASN D 159 TYR D 165 -1 O PHE D 163 N ASN D 151 SHEET 5 AA4 6 ASN D 189 LYS D 195 -1 O ILE D 194 N MET D 160 SHEET 6 AA4 6 SER D 181 ILE D 184 -1 N SER D 181 O ASP D 193 CISPEP 1 LYS A 102 ALA A 103 0 9.30 CRYST1 72.270 72.270 279.369 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013837 0.007989 0.000000 0.00000 SCALE2 0.000000 0.015978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003579 0.00000