HEADER HYDROLASE 02-MAY-16 5JOD TITLE STRUCTURE OF PROPLASMEPSIN IV FROM PLASMODIUM FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROPLASMEPSIN IV; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 75-449; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 5833; SOURCE 5 GENE: PFBG_05102; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MALARIA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.RECACHA,I.AKOPJANA,K.TARS,K.JAUDZEMS REVDAT 5 10-JAN-24 5JOD 1 REMARK REVDAT 4 17-JAN-18 5JOD 1 REMARK REVDAT 3 28-SEP-16 5JOD 1 JRNL REVDAT 2 14-SEP-16 5JOD 1 JRNL REVDAT 1 17-AUG-16 5JOD 0 SPRSDE 17-AUG-16 5JOD 4Y7H JRNL AUTH R.RECACHA,K.JAUDZEMS,I.AKOPJANA,A.JIRGENSONS,K.TARS JRNL TITL CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM PROPLASMEPSIN IV: JRNL TITL 2 THE PLASTICITY OF PROPLASMEPSINS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 659 2016 JRNL REFN ESSN 2053-230X JRNL PMID 27599854 JRNL DOI 10.1107/S2053230X16011663 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.K.BERNSTEIN,M.M.CHERNEY,H.LOETSCHER,R.G.RIDLEY,M.N.JAMES REMARK 1 TITL CRYSTAL STRUCTURE OF THE NOVEL ASPARTIC PROTEINASE ZYMOGEN REMARK 1 TITL 2 PROPLASMEPSIN II FROM PLASMODIUM FALCIPARUM. REMARK 1 REF NAT. STRUCT. BIOL. V. 6 32 1999 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 9886289 REMARK 1 DOI 10.1038/4905 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.K.BERNSTEIN,M.M.CHERNEY,C.A.YOWELL,J.B.DAME,M.N.JAMES REMARK 1 TITL STRUCTURAL INSIGHTS INTO THE ACTIVATION OF P. VIVAX REMARK 1 TITL 2 PLASMEPSIN. REMARK 1 REF J. MOL. BIOL. V. 329 505 2003 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 12767832 REMARK 1 DOI 10.1016/S0022-2836(03)00444-3 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 129074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 6475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6892 - 4.7445 0.89 3946 199 0.1602 0.1867 REMARK 3 2 4.7445 - 3.7671 0.94 4041 204 0.1276 0.1503 REMARK 3 3 3.7671 - 3.2913 0.95 4093 227 0.1460 0.1806 REMARK 3 4 3.2913 - 2.9905 0.96 4126 197 0.1630 0.2197 REMARK 3 5 2.9905 - 2.7762 0.96 4111 198 0.1707 0.2010 REMARK 3 6 2.7762 - 2.6126 0.96 4119 195 0.1707 0.1801 REMARK 3 7 2.6126 - 2.4818 0.97 4118 212 0.1731 0.2063 REMARK 3 8 2.4818 - 2.3738 0.97 4127 212 0.1668 0.2021 REMARK 3 9 2.3738 - 2.2824 0.97 4127 202 0.1625 0.1980 REMARK 3 10 2.2824 - 2.2037 0.97 4095 218 0.1667 0.1781 REMARK 3 11 2.2037 - 2.1348 0.97 4107 219 0.1639 0.1972 REMARK 3 12 2.1348 - 2.0737 0.97 4092 248 0.1700 0.1968 REMARK 3 13 2.0737 - 2.0192 0.97 4071 220 0.1821 0.2204 REMARK 3 14 2.0192 - 1.9699 0.97 4133 231 0.1710 0.1816 REMARK 3 15 1.9699 - 1.9251 0.97 4064 240 0.1840 0.2200 REMARK 3 16 1.9251 - 1.8841 0.97 4076 213 0.1951 0.2437 REMARK 3 17 1.8841 - 1.8465 0.97 4092 218 0.1957 0.2286 REMARK 3 18 1.8465 - 1.8116 0.97 4117 224 0.2052 0.2359 REMARK 3 19 1.8116 - 1.7793 0.97 4127 230 0.2191 0.2470 REMARK 3 20 1.7793 - 1.7491 0.97 4049 225 0.2326 0.2499 REMARK 3 21 1.7491 - 1.7209 0.97 4133 197 0.2393 0.2705 REMARK 3 22 1.7209 - 1.6944 0.97 4068 210 0.2506 0.2917 REMARK 3 23 1.6944 - 1.6695 0.97 4101 236 0.2644 0.2879 REMARK 3 24 1.6695 - 1.6460 0.97 4097 215 0.2786 0.3067 REMARK 3 25 1.6460 - 1.6237 0.97 4037 227 0.2812 0.3178 REMARK 3 26 1.6237 - 1.6026 0.97 4155 196 0.3024 0.2965 REMARK 3 27 1.6026 - 1.5826 0.97 4102 206 0.3187 0.3432 REMARK 3 28 1.5826 - 1.5635 0.96 4050 221 0.3334 0.3378 REMARK 3 29 1.5635 - 1.5454 0.97 4065 219 0.3503 0.3538 REMARK 3 30 1.5454 - 1.5280 0.94 3960 216 0.3722 0.3957 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.0400 REMARK 3 OPERATOR: -H,-K,H+L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6200 REMARK 3 ANGLE : 1.070 8387 REMARK 3 CHIRALITY : 0.045 910 REMARK 3 PLANARITY : 0.005 1068 REMARK 3 DIHEDRAL : 12.707 2244 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1:328) REMARK 3 ORIGIN FOR THE GROUP (A): 60.4164 -8.7172 11.6585 REMARK 3 T TENSOR REMARK 3 T11: 0.1197 T22: 0.1994 REMARK 3 T33: 0.1340 T12: 0.0031 REMARK 3 T13: -0.0412 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.7176 L22: 1.3471 REMARK 3 L33: 0.8000 L12: -0.0028 REMARK 3 L13: -0.4162 L23: -0.0654 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: 0.1297 S13: -0.0307 REMARK 3 S21: -0.1282 S22: -0.0029 S23: 0.0476 REMARK 3 S31: 0.0049 S32: -0.0576 S33: 0.0274 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 1:328) REMARK 3 ORIGIN FOR THE GROUP (A): 88.2049 -16.2994 36.4994 REMARK 3 T TENSOR REMARK 3 T11: 0.1360 T22: 0.1565 REMARK 3 T33: 0.2070 T12: 0.0241 REMARK 3 T13: -0.0203 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.7059 L22: 0.5399 REMARK 3 L33: 0.6207 L12: 0.3744 REMARK 3 L13: 0.0972 L23: 0.2446 REMARK 3 S TENSOR REMARK 3 S11: 0.0456 S12: 0.0244 S13: 0.0692 REMARK 3 S21: -0.0438 S22: -0.0315 S23: 0.0291 REMARK 3 S31: -0.0477 S32: -0.0069 S33: -0.0179 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JOD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 129149 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 48.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.60900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PFZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, 25% (W/V) PEG REMARK 280 3350 200 MM AMMONIUM ACETATE, PH 4.7, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.39000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 165.81800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -31.39000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 165.81800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 31.39000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 GOL A 402 O HOH A 501 2.02 REMARK 500 NZ LYS B 64 O HOH B 501 2.06 REMARK 500 O HIS A 79P O HOH A 502 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 119P -62.34 67.81 REMARK 500 ASP A 4 74.55 -105.31 REMARK 500 ASP A 69 -74.99 -124.99 REMARK 500 ASN A 251 106.05 -54.38 REMARK 500 ASP A 281 110.07 -160.11 REMARK 500 TYR A 288 46.32 -101.91 REMARK 500 ASP A 295 -155.59 -149.14 REMARK 500 LYS B 120P 43.89 -87.84 REMARK 500 SER B 1 -175.30 -170.01 REMARK 500 ASP B 4 77.97 -163.83 REMARK 500 LEU B 8 -56.72 -25.08 REMARK 500 ASP B 69 -75.69 -127.65 REMARK 500 TYR B 288 48.74 -94.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y7H RELATED DB: PDB REMARK 900 OTHER EXPERIMENTAL DATA WAS ANALYZED AND USED FOR STRUCTURE REMARK 900 SOLUTION AND REFINEMENT DBREF 5JOD A 78P 328 UNP W7FF86 W7FF86_PLAF8 75 449 DBREF 5JOD B 78P 328 UNP W7FF86 W7FF86_PLAF8 75 449 SEQRES 1 A 375 LYS HIS THR THR ILE GLY PHE LYS ILE ASP ARG PRO HIS SEQRES 2 A 375 ASP LYS VAL LEU SER SER VAL LEU LYS ASN LYS LEU SER SEQRES 3 A 375 THR TYR VAL LYS GLU SER PHE LYS PHE PHE LYS SER GLY SEQRES 4 A 375 TYR ALA GLN LYS GLY TYR LEU GLY SER GLU ASN ASP SER SEQRES 5 A 375 ILE GLU LEU ASP ASP VAL ALA ASN LEU MET PHE TYR GLY SEQRES 6 A 375 GLU GLY GLN ILE GLY THR ASN LYS GLN PRO PHE MET PHE SEQRES 7 A 375 ILE PHE ASP THR GLY SER ALA ASN LEU TRP VAL PRO SER SEQRES 8 A 375 VAL ASN CYS ASP SER ILE GLY CYS SER THR LYS HIS LEU SEQRES 9 A 375 TYR ASP ALA SER ALA SER LYS SER TYR GLU LYS ASP GLY SEQRES 10 A 375 THR LYS VAL GLU ILE SER TYR GLY SER GLY THR VAL ARG SEQRES 11 A 375 GLY TYR PHE SER LYS ASP VAL ILE SER LEU GLY ASP LEU SEQRES 12 A 375 SER LEU PRO TYR LYS PHE ILE GLU VAL THR ASP ALA ASP SEQRES 13 A 375 ASP LEU GLU PRO ILE TYR SER GLY SER GLU PHE ASP GLY SEQRES 14 A 375 ILE LEU GLY LEU GLY TRP LYS ASP LEU SER ILE GLY SER SEQRES 15 A 375 ILE ASP PRO VAL VAL VAL GLU LEU LYS LYS GLN ASN LYS SEQRES 16 A 375 ILE ASP ASN ALA LEU PHE THR PHE TYR LEU PRO VAL HIS SEQRES 17 A 375 ASP LYS HIS VAL GLY TYR LEU THR ILE GLY GLY ILE GLU SEQRES 18 A 375 SER ASP PHE TYR GLU GLY PRO LEU THR TYR GLU LYS LEU SEQRES 19 A 375 ASN HIS ASP LEU TYR TRP GLN ILE ASP LEU ASP ILE HIS SEQRES 20 A 375 PHE GLY LYS TYR VAL MET GLN LYS ALA ASN ALA VAL VAL SEQRES 21 A 375 ASP SER GLY THR SER THR ILE THR ALA PRO THR SER PHE SEQRES 22 A 375 LEU ASN LYS PHE PHE ARG ASP MET ASN VAL ILE LYS VAL SEQRES 23 A 375 PRO PHE LEU PRO LEU TYR VAL THR THR CYS ASP ASN ASP SEQRES 24 A 375 ASP LEU PRO THR LEU GLU PHE HIS SER ARG ASN ASN LYS SEQRES 25 A 375 TYR THR LEU GLU PRO GLU PHE TYR MET ASP PRO LEU SER SEQRES 26 A 375 ASP ILE ASP PRO ALA LEU CYS MET LEU TYR ILE LEU PRO SEQRES 27 A 375 VAL ASP ILE ASP ASP ASN THR PHE ILE LEU GLY ASP PRO SEQRES 28 A 375 PHE MET ARG LYS TYR PHE THR VAL PHE ASP TYR GLU LYS SEQRES 29 A 375 GLU SER VAL GLY PHE ALA VAL ALA LYS ASN LEU SEQRES 1 B 375 LYS HIS THR THR ILE GLY PHE LYS ILE ASP ARG PRO HIS SEQRES 2 B 375 ASP LYS VAL LEU SER SER VAL LEU LYS ASN LYS LEU SER SEQRES 3 B 375 THR TYR VAL LYS GLU SER PHE LYS PHE PHE LYS SER GLY SEQRES 4 B 375 TYR ALA GLN LYS GLY TYR LEU GLY SER GLU ASN ASP SER SEQRES 5 B 375 ILE GLU LEU ASP ASP VAL ALA ASN LEU MET PHE TYR GLY SEQRES 6 B 375 GLU GLY GLN ILE GLY THR ASN LYS GLN PRO PHE MET PHE SEQRES 7 B 375 ILE PHE ASP THR GLY SER ALA ASN LEU TRP VAL PRO SER SEQRES 8 B 375 VAL ASN CYS ASP SER ILE GLY CYS SER THR LYS HIS LEU SEQRES 9 B 375 TYR ASP ALA SER ALA SER LYS SER TYR GLU LYS ASP GLY SEQRES 10 B 375 THR LYS VAL GLU ILE SER TYR GLY SER GLY THR VAL ARG SEQRES 11 B 375 GLY TYR PHE SER LYS ASP VAL ILE SER LEU GLY ASP LEU SEQRES 12 B 375 SER LEU PRO TYR LYS PHE ILE GLU VAL THR ASP ALA ASP SEQRES 13 B 375 ASP LEU GLU PRO ILE TYR SER GLY SER GLU PHE ASP GLY SEQRES 14 B 375 ILE LEU GLY LEU GLY TRP LYS ASP LEU SER ILE GLY SER SEQRES 15 B 375 ILE ASP PRO VAL VAL VAL GLU LEU LYS LYS GLN ASN LYS SEQRES 16 B 375 ILE ASP ASN ALA LEU PHE THR PHE TYR LEU PRO VAL HIS SEQRES 17 B 375 ASP LYS HIS VAL GLY TYR LEU THR ILE GLY GLY ILE GLU SEQRES 18 B 375 SER ASP PHE TYR GLU GLY PRO LEU THR TYR GLU LYS LEU SEQRES 19 B 375 ASN HIS ASP LEU TYR TRP GLN ILE ASP LEU ASP ILE HIS SEQRES 20 B 375 PHE GLY LYS TYR VAL MET GLN LYS ALA ASN ALA VAL VAL SEQRES 21 B 375 ASP SER GLY THR SER THR ILE THR ALA PRO THR SER PHE SEQRES 22 B 375 LEU ASN LYS PHE PHE ARG ASP MET ASN VAL ILE LYS VAL SEQRES 23 B 375 PRO PHE LEU PRO LEU TYR VAL THR THR CYS ASP ASN ASP SEQRES 24 B 375 ASP LEU PRO THR LEU GLU PHE HIS SER ARG ASN ASN LYS SEQRES 25 B 375 TYR THR LEU GLU PRO GLU PHE TYR MET ASP PRO LEU SER SEQRES 26 B 375 ASP ILE ASP PRO ALA LEU CYS MET LEU TYR ILE LEU PRO SEQRES 27 B 375 VAL ASP ILE ASP ASP ASN THR PHE ILE LEU GLY ASP PRO SEQRES 28 B 375 PHE MET ARG LYS TYR PHE THR VAL PHE ASP TYR GLU LYS SEQRES 29 B 375 GLU SER VAL GLY PHE ALA VAL ALA LYS ASN LEU HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL B 401 6 HET GOL B 402 6 HET GOL B 403 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 9(C3 H8 O3) FORMUL 12 HOH *689(H2 O) HELIX 1 AA1 ARG A 88P ASN A 100P 1 13 HELIX 2 AA2 LEU A 102P SER A 115P 1 14 HELIX 3 AA3 GLU A 7 ALA A 12 5 6 HELIX 4 AA4 SER A 49 LYS A 55 5 7 HELIX 5 AA5 ASP A 59 SER A 63 5 5 HELIX 6 AA6 ALA A 108 GLU A 112 5 5 HELIX 7 AA7 PRO A 138 GLN A 146 1 9 HELIX 8 AA8 GLU A 174 ASP A 176 5 3 HELIX 9 AA9 PRO A 223 MET A 234 1 12 HELIX 10 AB1 GLU A 269 TYR A 273 1 5 HELIX 11 AB2 GLY A 302 LYS A 308 1 7 HELIX 12 AB3 ARG B 88P ASN B 100P 1 13 HELIX 13 AB4 LEU B 102P SER B 115P 1 14 HELIX 14 AB5 GLU B 7 ALA B 12 1 6 HELIX 15 AB6 SER B 49 LYS B 55 5 7 HELIX 16 AB7 ASP B 59 SER B 63 5 5 HELIX 17 AB8 ALA B 108 GLU B 112 5 5 HELIX 18 AB9 PRO B 138 GLN B 146 1 9 HELIX 19 AC1 GLU B 174 ASP B 176 5 3 HELIX 20 AC2 PRO B 223 MET B 234 1 12 HELIX 21 AC3 GLU B 269 TYR B 273 1 5 HELIX 22 AC4 GLY B 302 LYS B 308 1 7 SHEET 1 AA1 4 GLN A 27 PRO A 28 0 SHEET 2 AA1 4 GLN A 21 ILE A 22 -1 N ILE A 22 O GLN A 27 SHEET 3 AA1 4 GLY A 80 LEU A 93 -1 O SER A 92 N GLN A 21 SHEET 4 AA1 4 GLU A 67 TYR A 77 -1 N TYR A 77 O GLY A 80 SHEET 1 AA214 GLN A 27 PRO A 28 0 SHEET 2 AA214 GLN A 21 ILE A 22 -1 N ILE A 22 O GLN A 27 SHEET 3 AA214 GLY A 80 LEU A 93 -1 O SER A 92 N GLN A 21 SHEET 4 AA214 LEU A 96 ASP A 107 -1 O GLU A 104 N TYR A 85 SHEET 5 AA214 LEU A 40 PRO A 43 1 N VAL A 42 O VAL A 105 SHEET 6 AA214 GLY A 122 GLY A 125 -1 O ILE A 123 N TRP A 41 SHEET 7 AA214 PHE A 31 ASP A 34 1 N ILE A 32 O LEU A 124 SHEET 8 AA214 LEU A 14 TYR A 17 -1 N TYR A 17 O PHE A 31 SHEET 9 AA214 THR A 80P ASP A 87P-1 N LYS A 85P O PHE A 16 SHEET 10 AA214 VAL A 165 ILE A 170 -1 O LEU A 168 N ILE A 82P SHEET 11 AA214 LEU A 153 TYR A 157 -1 N TYR A 157 O TYR A 167 SHEET 12 AA214 TYR A 309 ASP A 314 -1 O PHE A 313 N PHE A 154 SHEET 13 AA214 SER A 319 ALA A 325 -1 O GLY A 321 N VAL A 312 SHEET 14 AA214 TYR A 178 LYS A 186 -1 N GLU A 185 O VAL A 320 SHEET 1 AA3 7 LYS A 265 LEU A 268 0 SHEET 2 AA3 7 LEU A 257 HIS A 260 -1 N PHE A 259 O TYR A 266 SHEET 3 AA3 7 GLN A 194 PHE A 201 -1 N HIS A 200 O GLU A 258 SHEET 4 AA3 7 TYR A 204 VAL A 213 -1 O ALA A 209 N LEU A 197 SHEET 5 AA3 7 THR A 298 LEU A 301 1 O LEU A 301 N VAL A 212 SHEET 6 AA3 7 ILE A 220 ALA A 222 -1 N THR A 221 O ILE A 300 SHEET 7 AA3 7 ILE A 289 PRO A 291 1 O LEU A 290 N ILE A 220 SHEET 1 AA4 4 ILE A 237 LYS A 238 0 SHEET 2 AA4 4 TYR A 245 THR A 248 -1 O VAL A 246 N ILE A 237 SHEET 3 AA4 4 ASP A 281 LEU A 287 -1 O CYS A 285 N THR A 247 SHEET 4 AA4 4 MET A 274 LEU A 277 -1 N LEU A 277 O LEU A 284 SHEET 1 AA5 9 GLU B 67 TYR B 77 0 SHEET 2 AA5 9 GLY B 80 LEU B 93 -1 O GLY B 80 N TYR B 77 SHEET 3 AA5 9 MET B 15 ILE B 22 -1 N GLN B 21 O SER B 92 SHEET 4 AA5 9 THR B 80P ASP B 87P-1 N LYS B 85P O TYR B 17 SHEET 5 AA5 9 VAL B 165 ILE B 170 -1 O ILE B 170 N THR B 80P SHEET 6 AA5 9 LEU B 153 TYR B 157 -1 N TYR B 157 O TYR B 167 SHEET 7 AA5 9 TYR B 309 ASP B 314 -1 O PHE B 313 N PHE B 154 SHEET 8 AA5 9 SER B 319 ALA B 325 -1 O GLY B 321 N VAL B 312 SHEET 9 AA5 9 TYR B 178 LYS B 186 -1 N GLU B 185 O VAL B 320 SHEET 1 AA613 GLU B 67 TYR B 77 0 SHEET 2 AA613 GLY B 80 LEU B 93 -1 O GLY B 80 N TYR B 77 SHEET 3 AA613 LEU B 96 ASP B 107 -1 O LEU B 98 N ILE B 91 SHEET 4 AA613 LEU B 40 PRO B 43 1 N VAL B 42 O VAL B 105 SHEET 5 AA613 GLY B 122 GLY B 125 -1 O ILE B 123 N TRP B 41 SHEET 6 AA613 GLN B 27 ASP B 34 1 N ILE B 32 O LEU B 124 SHEET 7 AA613 MET B 15 ILE B 22 -1 N GLY B 18 O PHE B 31 SHEET 8 AA613 THR B 80P ASP B 87P-1 N LYS B 85P O TYR B 17 SHEET 9 AA613 VAL B 165 ILE B 170 -1 O ILE B 170 N THR B 80P SHEET 10 AA613 LEU B 153 TYR B 157 -1 N TYR B 157 O TYR B 167 SHEET 11 AA613 TYR B 309 ASP B 314 -1 O PHE B 313 N PHE B 154 SHEET 12 AA613 SER B 319 ALA B 325 -1 O GLY B 321 N VAL B 312 SHEET 13 AA613 TYR B 178 LYS B 186 -1 N GLU B 185 O VAL B 320 SHEET 1 AA7 7 LYS B 265 LEU B 268 0 SHEET 2 AA7 7 LEU B 257 HIS B 260 -1 N PHE B 259 O TYR B 266 SHEET 3 AA7 7 GLN B 194 PHE B 201 -1 N ASP B 198 O HIS B 260 SHEET 4 AA7 7 TYR B 204 VAL B 213 -1 O TYR B 204 N PHE B 201 SHEET 5 AA7 7 THR B 298 LEU B 301 1 O PHE B 299 N ASN B 210 SHEET 6 AA7 7 ILE B 220 ALA B 222 -1 N THR B 221 O ILE B 300 SHEET 7 AA7 7 ILE B 289 PRO B 291 1 O LEU B 290 N ILE B 220 SHEET 1 AA8 4 ILE B 237 LYS B 238 0 SHEET 2 AA8 4 TYR B 245 THR B 248 -1 O VAL B 246 N ILE B 237 SHEET 3 AA8 4 ASP B 281 LEU B 287 -1 O CYS B 285 N THR B 247 SHEET 4 AA8 4 MET B 274 LEU B 277 -1 N LEU B 277 O LEU B 284 SSBOND 1 CYS A 47 CYS A 52 1555 1555 2.06 SSBOND 2 CYS A 249 CYS A 285 1555 1555 2.04 SSBOND 3 CYS B 47 CYS B 52 1555 1555 2.06 SSBOND 4 CYS B 249 CYS B 285 1555 1555 2.05 LINK NZ LYS A 85P O2 GOL A 402 1555 1555 1.30 CISPEP 1 GLU A 112 PRO A 113 0 5.72 CISPEP 2 GLY B 121P TYR B 122P 0 1.67 CISPEP 3 GLU B 112 PRO B 113 0 4.14 SITE 1 AC1 6 ASN A 264 LYS A 265 HOH A 538 HOH A 587 SITE 2 AC1 6 HOH A 599 HOH A 718 SITE 1 AC2 8 LYS A 85P ASP A 162 HIS A 164 VAL A 165 SITE 2 AC2 8 HOH A 501 HOH A 638 SER B 95P LEU B 98P SITE 1 AC3 8 PHE A 16 ASP A 87P GLU A 119 HOH A 503 SITE 2 AC3 8 HOH A 583 LEU B 98P LYS B 101P HOH B 656 SITE 1 AC4 3 THR A 81P TYR A 167 HOH A 512 SITE 1 AC5 4 GLU A 179 ALA A 325 ASN A 327 HOH A 732 SITE 1 AC6 8 HIS A 79P THR A 80P ASP A 95 LEU A 96 SITE 2 AC6 8 LYS A 148 ILE A 149 ILE A 170 HOH A 669 SITE 1 AC7 6 GLU B 179 ALA B 325 LYS B 326 ASN B 327 SITE 2 AC7 6 HOH B 694 HOH B 744 SITE 1 AC8 7 VAL B 11 HIS B 90P SER B 218 PRO B 243 SITE 2 AC8 7 MET B 286 LEU B 290 HOH B 553 SITE 1 AC9 1 PHE B 177 CRYST1 82.909 62.780 94.030 90.00 113.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012061 0.000000 0.005244 0.00000 SCALE2 0.000000 0.015929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011597 0.00000